BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0126.13
(168 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI420256 286 2e-78
BP047847 40 3e-04
TC18050 36 0.004
AI967308 30 0.16
AV408185 29 0.48
AV406797 28 0.81
TC15620 similar to UP|Q940X9 (Q940X9) AT5g21160/T10F18_190 (Prol... 28 0.81
BP047593 28 0.81
TC12479 similar to GB|AAL09776.1|15982858|AY057536 At1g29850/F1N... 28 1.1
TC14850 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein ... 28 1.1
TC17527 similar to UP|Q84MA8 (Q84MA8) At5g50300, partial (12%) 27 1.4
TC16544 similar to UP|Q9SFU7 (Q9SFU7) T1B9.17 protein (AT3g07170... 27 1.8
BP054334 27 2.4
TC11571 similar to UP|Q940U9 (Q940U9) AT5g17440/K3M16_10, partia... 27 2.4
BP029600 26 4.0
AW719363 26 4.0
TC15621 similar to UP|O81340 (O81340) 26S proteasome regulatory ... 26 4.0
BI420796 25 5.3
TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , p... 25 5.3
TC11988 similar to AAR99502 (AAR99502) 3,5-epimerase/4-reductase... 25 5.3
>BI420256
Length = 524
Score = 286 bits (731), Expect = 2e-78
Identities = 140/142 (98%), Positives = 141/142 (98%)
Frame = +3
Query: 1 MGEFTIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQS 60
MGEFTIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQS VTGKPENAAAPGWPVQS
Sbjct: 99 MGEFTIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQSNVTGKPENAAAPGWPVQS 278
Query: 61 PLFLPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLP 120
PLFLPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHD+EYKLP
Sbjct: 279 PLFLPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDREYKLP 458
Query: 121 NPKPEPCIAERLATLSCYKEHI 142
NPKPEPCIAERLATLSCYKEHI
Sbjct: 459 NPKPEPCIAERLATLSCYKEHI 524
>BP047847
Length = 258
Score = 39.7 bits (91), Expect = 3e-04
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -3
Query: 151 FVTNFAGCLRKFGRSRDK 168
FVTNFAGCLRKF RSRDK
Sbjct: 244 FVTNFAGCLRKFARSRDK 191
>TC18050
Length = 695
Score = 35.8 bits (81), Expect = 0.004
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 65 PAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPNPKP 124
P PP + DP + G+++ + S+K E++++ + ++ K+L + P P P
Sbjct: 310 PPPPPKEKKDPNVSGVQAKVMASKKRKEAMKESIAKLREKGKSINKELPPAPQEAPPPAP 489
Query: 125 EPCIAERLATL 135
E + +L TL
Sbjct: 490 EE*LLVQLLTL 522
>AI967308
Length = 443
Score = 30.4 bits (67), Expect = 0.16
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = +1
Query: 32 KVAKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQPADPEIDGIRSVLRESEKVL 91
++ KET+ + T P +A P P + L + EI ++ L E L
Sbjct: 118 QIEKETQPSEDSTT--PPDAPKPEIPCVDEMTLK--------NDEIALLKCNLEEKVTEL 267
Query: 92 ESLQKQEENMLQEVTQKAKDLHDKEYK 118
ES+ K+ EN+ Q++ + + + E K
Sbjct: 268 ESMSKENENLKQQLNEAVSKVSEAETK 348
>AV408185
Length = 352
Score = 28.9 bits (63), Expect = 0.48
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -3
Query: 5 TIQISNELVNQLVDDPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSP 61
T+ +++ L+N + P KK +RR + + + P+ TG + A WP++SP
Sbjct: 302 TVVLTSSLMNCEMTRPTAKKMPWSSRRNMKWQKKPPRLMKTGTRDTQARK-WPMRSP 135
>AV406797
Length = 418
Score = 28.1 bits (61), Expect = 0.81
Identities = 14/42 (33%), Positives = 19/42 (44%)
Frame = +1
Query: 31 RKVAKETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPVQP 72
R+ K EKP + V G+ + + W SP PP QP
Sbjct: 172 REEGKNMEKPSAGVVGRKTYSRSVSWTDGSPSRRKPPPPSQP 297
>TC15620 similar to UP|Q940X9 (Q940X9) AT5g21160/T10F18_190 (Proline-rich
protein family), partial (19%)
Length = 1063
Score = 28.1 bits (61), Expect = 0.81
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 80 IRSVLRESEKVLESLQKQEENMLQEVTQKAKDLH 113
+ +LRE + LE + +E+N+++E TQK + L+
Sbjct: 447 LEKLLREEYRSLEDFRAKEKNLVKEDTQKVE*LY 548
>BP047593
Length = 459
Score = 28.1 bits (61), Expect = 0.81
Identities = 11/41 (26%), Positives = 20/41 (47%)
Frame = +3
Query: 21 VPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQSP 61
+P K ++ V ++T+ + G+PE + P WP P
Sbjct: 63 IPNTKRESTQK*VKRKTKPKMERSHGRPEKLSPPPWP*HRP 185
>TC12479 similar to GB|AAL09776.1|15982858|AY057536 At1g29850/F1N18_19
{Arabidopsis thaliana;}, partial (95%)
Length = 581
Score = 27.7 bits (60), Expect = 1.1
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = +3
Query: 33 VAKETEKP-QSKVTG-KPENAAAPGWPV-QSPL-FLPAKPPVQPADPEIDGIRSVLRESE 88
+ K+T K ++VT +P AAA + + ++PL FLP+ + ADPE++ IR
Sbjct: 15 INKQTNKQTNNRVTQTRPACAAATQFRISENPLGFLPSANLPKMADPELEAIR-----QR 179
Query: 89 KVLESLQKQEENMLQEVTQKA 109
++ E + +Q Q+ QKA
Sbjct: 180 RMQELMGRQGAGSQQDPEQKA 242
>TC14850 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37,
partial (25%)
Length = 577
Score = 27.7 bits (60), Expect = 1.1
Identities = 18/57 (31%), Positives = 28/57 (48%)
Frame = +1
Query: 64 LPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLP 120
LPAKP Q D E+D E L + +EEN +E Q ++ +D++ +P
Sbjct: 130 LPAKPSSQLTDMELDEC------EETTLHDVNMEEENRRKE-QQAQQEAYDEDDDMP 279
>TC17527 similar to UP|Q84MA8 (Q84MA8) At5g50300, partial (12%)
Length = 493
Score = 27.3 bits (59), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 35 KETEKPQSKVTGKPENAAAPGWPVQSPLFLPAKPPV-QPADP 75
K+ + K + +P+ +P WP SP P+ PP+ +PA P
Sbjct: 362 KQGKHASQKSSVQPQPLLSP-WPTSSPSTPPSSPPLEEPAPP 484
>TC16544 similar to UP|Q9SFU7 (Q9SFU7) T1B9.17 protein
(AT3g07170/T1B9_17), partial (33%)
Length = 546
Score = 26.9 bits (58), Expect = 1.8
Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 35 KETEKPQSKVTGKPENAA----APGWPVQSPLFLPAKPPVQPADPEIDGIRSVLRESEKV 90
K ++ P+SKV GKP N + AP ++ K + A+ +D L EK
Sbjct: 8 KNSDPPKSKVMGKPSNKSVGVEAPAAKIKRSTNPAPKTLARKAETSVDEFLQSL-GLEKY 184
Query: 91 LESLQKQE 98
L S Q +E
Sbjct: 185LISFQAEE 208
>BP054334
Length = 402
Score = 26.6 bits (57), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 135 LSCYKEHIKDPLKCSAFVTNFAG 157
++CYKEH K K + V NF G
Sbjct: 34 VTCYKEHDKKGKKSNKIVNNFHG 102
>TC11571 similar to UP|Q940U9 (Q940U9) AT5g17440/K3M16_10, partial (67%)
Length = 1011
Score = 26.6 bits (57), Expect = 2.4
Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 27/153 (17%)
Frame = -1
Query: 24 KKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQS-------PLFLPAKPPVQPADPE 76
K +R+ R VA + ++ AP W S LFLP +P + P+
Sbjct: 969 KMLRKCRTHVASDQ*SAHRQLYTLKNPILAPAWEEAS*GLQPLPLLFLPHQPILARQVPQ 790
Query: 77 IDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKEYKLPN--------------- 121
S L S +++ QE K D + E K+P
Sbjct: 789 --------PFSSSHLSSPVSEDQEQWQEEAPKVAD*AEVEVKMPYLC*MRLKVVQTACLL 634
Query: 122 -----PKPEPCIAERLATLSCYKEHIKDPLKCS 149
P P + + LSC ++H+ PL S
Sbjct: 633 F*F*APLQPPVLGS--SNLSCLQDHVDQPLSTS 541
>BP029600
Length = 536
Score = 25.8 bits (55), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 45 TGKPENAAAPGWPVQSPLFLP 65
T KP AA+ WP SP F+P
Sbjct: 391 TWKPHLAASFAWPRPSPSFIP 453
>AW719363
Length = 551
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (75%)
Frame = +2
Query: 75 PEIDGIRSVLRESEKVLESLQ 95
PE+D ++ L E EKVLE+++
Sbjct: 290 PEVDEAKTTLSEVEKVLETIE 352
>TC15621 similar to UP|O81340 (O81340) 26S proteasome regulatory subunit
S5A, partial (80%)
Length = 1109
Score = 25.8 bits (55), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 47 KPENAAAPGWPVQSPLFLPAKPPVQPADPEIDGIRSVLRESEKVLESLQKQEEN 100
+P P WP PL L + P+Q DP +D ++ ++ + L+ Q+Q +N
Sbjct: 875 QPSWLLLPAWPSPLPLKLLEQEPIQ--DPSLDQHQTHIQIHHQ-LQLRQQQRQN 723
>BI420796
Length = 552
Score = 25.4 bits (54), Expect = 5.3
Identities = 11/28 (39%), Positives = 14/28 (49%)
Frame = +2
Query: 48 PENAAAPGWPVQSPLFLPAKPPVQPADP 75
P N P P+ P FLP + P+ P P
Sbjct: 173 PNNHLVPPDPLLFPRFLPQQTPLPPFPP 256
>TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , partial (89%)
Length = 1672
Score = 25.4 bits (54), Expect = 5.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 98 EENMLQEVTQKAKDLHDKEYKLPNPKPEPCIAE 130
E+ L V + L D + KLP P P IAE
Sbjct: 993 EDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAE 1091
>TC11988 similar to AAR99502 (AAR99502) 3,5-epimerase/4-reductase, partial
(42%)
Length = 450
Score = 25.4 bits (54), Expect = 5.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -1
Query: 64 LPAKPPVQPADPEIDGIR-----SVLRESEKVLESLQK 96
LP KPP+QP P I + S L SE + +LQ+
Sbjct: 117 LPNKPPIQPVRP*IRNLS*F*F*SPLLASEPIFFTLQR 4
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,703,610
Number of Sequences: 28460
Number of extensions: 34938
Number of successful extensions: 243
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of query: 168
length of database: 4,897,600
effective HSP length: 84
effective length of query: 84
effective length of database: 2,506,960
effective search space: 210584640
effective search space used: 210584640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0126.13