BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0121b.8
(368 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF177539 42 1e-04
CN824937 28 2.4
TC13207 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, p... 28 3.2
TC11702 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, p... 27 4.1
TC14253 27 5.4
BI417325 27 5.4
AV773288 27 7.0
TC12066 26 9.2
TC10916 similar to UP|Q94KS0 (Q94KS0) Histidine-containing phosp... 26 9.2
TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2,... 26 9.2
>BF177539
Length = 327
Score = 42.4 bits (98), Expect = 1e-04
Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Frame = +3
Query: 25 HAFRESNGE-TIPCPCKKCVLHYVVNRAMAYEHLMVNGIIPSYDTWFCHGESINVLNRKE 83
H F S+ + I CPC C + R + YEHL++ +Y WF HGE+ V +
Sbjct: 9 HEFERSSVDGAILCPCGLCNFRKWLTRDVVYEHLIIKQFPRNYTFWFDHGETHEV---EI 179
Query: 84 ETNC 87
E NC
Sbjct: 180ENNC 191
>CN824937
Length = 662
Score = 28.1 bits (61), Expect = 2.4
Identities = 15/55 (27%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Frame = +3
Query: 102 HDAFEGFNQSMGNNIS-DGGDIESNLDENLTHTSRNQSHPEVEKFEQLMKDANEE 155
HD EG +S+ +S +GG + ++ T +N+ E ++ K +NEE
Sbjct: 459 HDGMEGEEESLEEPLSANGGQKDKRKNKKKTKKGKNKDKGVEEIISEVRKSSNEE 623
>TC13207 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(78%)
Length = 661
Score = 27.7 bits (60), Expect = 3.2
Identities = 25/113 (22%), Positives = 43/113 (37%), Gaps = 6/113 (5%)
Frame = +2
Query: 72 HGESINVLNRKEETNCREEAFRGDDMVGLIHDAFEGFNQSMGNNISDGGDIESNLDENLT 131
H E+I + K T EEA++G + G G I ++ + +
Sbjct: 275 HQEAIQDRDHKFVTKAVEEAYKGVEC---------GDGGPFGAVIVRNDEVVVSCHNMVL 427
Query: 132 HTSRNQSHPEVEKFEQLMKDANE------ELYSGCKKFSKLSFVLHLYHIKRL 178
+ +H EV + + N+ E+Y+ C+ +HL IKRL
Sbjct: 428 RNTDPTAHAEVTAIREACQKLNQIELADCEIYASCEPCPMCFGAIHLSRIKRL 586
>TC11702 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(95%)
Length = 744
Score = 27.3 bits (59), Expect = 4.1
Identities = 29/127 (22%), Positives = 45/127 (34%), Gaps = 22/127 (17%)
Frame = +2
Query: 74 ESINVLNRKEETNCREEAFRGDDMVGLIHDAFEGFNQSM------GNNISDGG------- 120
E +NV+ K T AF G I D F + G DGG
Sbjct: 56 EEVNVVQTKNGTVAVASAFAGHQEA--IQDRDHKFLRKAIGEAYTGIEYEDGGPFGAVIV 229
Query: 121 ---DIESNLDENLTHTSRNQSHPEVEKFEQLMKDANE------ELYSGCKKFSKLSFVLH 171
++ ++ + + +H EV + K N+ E+YS C+ +H
Sbjct: 230 CNDEVVASCHNMVLRNNDPTAHAEVTAIREACKKLNQIELSECEIYSSCEPCPMCFGAIH 409
Query: 172 LYHIKRL 178
L +KRL
Sbjct: 410 LSRVKRL 430
>TC14253
Length = 1361
Score = 26.9 bits (58), Expect = 5.4
Identities = 19/79 (24%), Positives = 34/79 (42%)
Frame = +2
Query: 137 QSHPEVEKFEQLMKDANEELYSGCKKFSKLSFVLHLYHIKRLFKWTNESFDALLGLLKDA 196
Q P V K +++ + ++ ++ + L +Y + L DAL + +
Sbjct: 704 QVAPHVPKLANMLEGGGKTPILSPRELDEIGYKLVVYPLSLLGVSIKAMQDALAAIKEGG 883
Query: 197 LPEGEKLPSSHYETKKIVG 215
+P E +PS E K IVG
Sbjct: 884 VPPPESMPSFE-EIKDIVG 937
>BI417325
Length = 449
Score = 26.9 bits (58), Expect = 5.4
Identities = 13/48 (27%), Positives = 24/48 (49%)
Frame = +2
Query: 103 DAFEGFNQSMGNNISDGGDIESNLDENLTHTSRNQSHPEVEKFEQLMK 150
+AFE + S G N+ + D+E TS++ ++ + K E+ K
Sbjct: 287 NAFELISMSKGLNLENLFDVEQGFKRETRFTSKSPANEIISKIEEAAK 430
>AV773288
Length = 422
Score = 26.6 bits (57), Expect = 7.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 347 STWPVILVPYNLPPWLCMKQ 366
+TWP+ LVPY L WLC Q
Sbjct: 319 TTWPLHLVPYVL--WLCKCQ 266
>TC12066
Length = 434
Score = 26.2 bits (56), Expect = 9.2
Identities = 10/24 (41%), Positives = 13/24 (53%)
Frame = +1
Query: 66 YDTWFCHGESINVLNRKEETNCRE 89
+ +FCH INV N + NC E
Sbjct: 301 FSHFFCHAYEINVSNLQAGINCEE 372
>TC10916 similar to UP|Q94KS0 (Q94KS0) Histidine-containing phosphotransfer
protein, partial (90%)
Length = 781
Score = 26.2 bits (56), Expect = 9.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 229 NDCMLFRNELADKNVNKCIKC 249
N C+ FRN ++N + C++C
Sbjct: 386 NACIAFRNFCEEQNTDACLRC 448
>TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2, complete
Length = 2946
Score = 26.2 bits (56), Expect = 9.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 249 CGASRWKNDEKKVPA 263
CG S+WKN KVP+
Sbjct: 314 CGFSKWKNPASKVPS 270
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,125,469
Number of Sequences: 28460
Number of extensions: 96565
Number of successful extensions: 481
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of query: 368
length of database: 4,897,600
effective HSP length: 92
effective length of query: 276
effective length of database: 2,279,280
effective search space: 629081280
effective search space used: 629081280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0121b.8