TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0119.3
         (209 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8081 similar to UP|AAQ84334 (AAQ84334) Zinc-finger protein, pa...    28  1.2
BP076661                                                               27  2.6
TC8113 weakly similar to UP|O23213 (O23213) Sugar transporter li...    26  5.8
TC16310                                                                26  5.8

>TC8081 similar to UP|AAQ84334 (AAQ84334) Zinc-finger protein, partial (65%)
          Length = 1222

 Score = 28.1 bits (61), Expect = 1.2
 Identities = 14/32 (43%), Positives = 19/32 (58%)
 Frame = +1

Query: 7    TNMQYIYRVAPNGIYTFTSFLFPALLFSSSHY 38
            +  Q+  +   NG YTFT   F ALLF S+H+
Sbjct: 1111 SRFQFNLKYKINGFYTFTG--FEALLFFSTHF 1200


>BP076661 
          Length = 532

 Score = 26.9 bits (58), Expect = 2.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 184 VYFNGKYFLFLKQGNVMDIDKSFS 207
           +Y +  YF+  K+G + D+D+SFS
Sbjct: 173 IYADYSYFVLSKEGFLRDLDRSFS 102


>TC8113 weakly similar to UP|O23213 (O23213) Sugar transporter like protein,
            partial (93%)
          Length = 1865

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -1

Query: 169  MKNEVMSMLQIYFAGVYFNGKYFLFLKQGNVM 200
            ++NE+  +L+ +     + G +FL++ +GN +
Sbjct: 1796 VENEIKILLRFFHVTKNYKGNFFLYIYKGNFL 1701


>TC16310 
          Length = 558

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 70 IEDSFEIESETIEHSLDVIKTVEDS 94
          +ED +E++  T+   +DV+K +E++
Sbjct: 51 VEDKYEVKKMTVHAVVDVVKNLENA 125


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,253,019
Number of Sequences: 28460
Number of extensions: 39629
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of query: 209
length of database: 4,897,600
effective HSP length: 86
effective length of query: 123
effective length of database: 2,450,040
effective search space: 301354920
effective search space used: 301354920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)