BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0118c.1
(565 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV426428 142 1e-34
BP053577 135 1e-32
CB826728 87 8e-28
BP080049 115 2e-26
BP060613 89 1e-18
BP032481 54 1e-16
AV411435 77 7e-15
AV780250 76 1e-14
BP075797 71 5e-13
AV767121 69 2e-12
TC13259 68 5e-12
CN825238 66 2e-11
TC17368 45 2e-11
TC9793 65 2e-11
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 65 3e-11
CB827358 65 3e-11
AV780729 42 4e-11
BP071404 63 1e-10
BP068506 54 6e-10
AV768060 57 6e-09
>AV426428
Length = 413
Score = 142 bits (358), Expect = 1e-34
Identities = 63/131 (48%), Positives = 86/131 (65%)
Frame = +3
Query: 243 ASSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSE 302
ASSS +P KLWKA+A+P+CCET WRACL +LPV++ LH RG+ +P CPRC
Sbjct: 6 ASSSQVPSLPSVD*RKLWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCLA 185
Query: 303 VEETVHHALFSCPLVRMIWFASPLNLRFDEEGSVHDFFLSFLATADTNIAGIFLAVLYSV 362
+T HA+ CP V IWFAS L R ++E +H+F F+ AD + G FL +LY++
Sbjct: 186 APKTADHAVLFCP*VHPIWFASSLGFRLNQECKMHEFVADFMQVAD*DTCGEFLTILYAI 365
Query: 363 WQARNELLFKW 373
W A+NEL F++
Sbjct: 366 WTAQNELCFRY 398
>BP053577
Length = 463
Score = 135 bits (341), Expect = 1e-32
Identities = 67/135 (49%), Positives = 91/135 (66%)
Frame = +3
Query: 431 AGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRWALRLATKLGFRRIWIETDCLEL 490
AG GMV RN GEV+A+A + + SP+LAEALG+RW ++LAT LGFRRI +ETDCL+L
Sbjct: 12 AGLGMVARNCDGEVMASACSSPVSISSPLLAEALGLRWTMQLATDLGFRRITLETDCLQL 191
Query: 491 YTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTFVRRTSNGAADALARLAFHYGCMIWI 550
+ W Q S+L++++ DCR L+ FD + +FVRRT N AD LAR + Y M+W+
Sbjct: 192 FNTWRSQEEGRSYLSSIISDCRILISAFDYVSVSFVRRTGNTVADFLARNSDTYANMVWV 371
Query: 551 EEAPSEITSITQDDV 565
EE P + S+ DV
Sbjct: 372 EEVPLTVVSLIDADV 416
>CB826728
Length = 509
Score = 87.4 bits (215), Expect(2) = 8e-28
Identities = 41/100 (41%), Positives = 57/100 (57%)
Frame = +1
Query: 215 FFWPETRDGCYSTRTGYSFI*KKFSEGEASSSSARVMPPALWMKLWKADAVPQCCETAWR 274
FFWP + DG YS+++GY FI + S+S A +P +W +W A ++P+C E WR
Sbjct: 208 FFWPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMWR 387
Query: 275 ACLDILPVRSILHRRGVVGNPCCPRCSEVEETVHHALFSC 314
AC LPVRS L RRG+ +P P +E H L +C
Sbjct: 388 ACAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507
Score = 53.5 bits (127), Expect(2) = 8e-28
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = +3
Query: 149 DKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGGCWDRNKVEFLCWPPTARAILSIPLPL 208
D W+P+ PLVY D+ L + V+DL+ G W+ N V + P T L++ LPL
Sbjct: 15 DAWLPNSAPLVYCEDLFVDLQLKKVADLI--ENGRWNENLVSMVFSPSTTAVFLAVSLPL 188
Query: 209 QQRDDCFF 216
Q +DC F
Sbjct: 189 QSYEDCLF 212
>BP080049
Length = 356
Score = 115 bits (288), Expect = 2e-26
Identities = 57/102 (55%), Positives = 71/102 (68%)
Frame = -1
Query: 464 LGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNF 523
L +RWAL LA++LGFR I ETDCL LY W R+GG S L T++ DCR+LL FDVF
Sbjct: 356 LSLRWALGLASELGFR*IVFETDCLHLYEAWKRRGG-CSVLDTLILDCRNLLSYFDVFQL 180
Query: 524 TFVRRTSNGAADALARLAFHYGCMIWIEEAPSEITSITQDDV 565
+FVRRTSN DALA+L F G ++W+EE P E+ + Q DV
Sbjct: 179 SFVRRTSNCVVDALAKLCFQLGNVVWVEELPHELYGLVQSDV 54
>BP060613
Length = 378
Score = 89.4 bits (220), Expect = 1e-18
Identities = 42/107 (39%), Positives = 61/107 (56%)
Frame = +1
Query: 39 WGGDVSHRTMHWLKWDTLCRPKGCGGIGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYK 98
W R +HW KWD L K GG+GF+DF+ N ALLAK WRI+ ++ +I K
Sbjct: 46 WWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK 225
Query: 99 AVYFPKESFLEAKKGYRPSYVWLSLQKSAWIFQEGGLWRVGNGKNIR 145
A+YFP FL+ K S+VW SL + + G W++G+G+ ++
Sbjct: 226 ALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETVQ 366
>BP032481
Length = 447
Score = 54.3 bits (129), Expect(2) = 1e-16
Identities = 27/65 (41%), Positives = 38/65 (57%)
Frame = -1
Query: 490 LYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTFVRRTSNGAADALARLAFHYGCMIW 549
L+ W + E S+L++++ DCR L FDV + +FVRRT N A AR A Y ++W
Sbjct: 258 LFKSWKAKEVE*SYLSSILQDCRLLFTAFDVVSLSFVRRTGNTVAGFFARNAETYANLVW 79
Query: 550 IEEAP 554
EE P
Sbjct: 78 PEEVP 64
Score = 48.9 bits (115), Expect(2) = 1e-16
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = -2
Query: 458 PVLAEALGMRWALRLATKLGFRRIWIETDCL 488
P+LAEA+ MRW ++LA LGFRRI +ETDCL
Sbjct: 353 PLLAEAMSMRWIMQLAIDLGFRRICLETDCL 261
>AV411435
Length = 426
Score = 77.0 bits (188), Expect = 7e-15
Identities = 41/128 (32%), Positives = 64/128 (49%), Gaps = 1/128 (0%)
Frame = +3
Query: 201 ILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*K-KFSEGEASSSSARVMPPALWMKL 259
I+ P + +D FWP G YS ++GY + +F+ +SSS+ LW +
Sbjct: 3 IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSS-FLWHTI 179
Query: 260 WKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEVEETVHHALFSCPLVRM 319
W A + WRA + +PV+ L RR + + CP C++ E ++HAL +C R
Sbjct: 180 WGAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRA 359
Query: 320 IWFASPLN 327
+WF PLN
Sbjct: 360 VWFGCPLN 383
>AV780250
Length = 494
Score = 76.3 bits (186), Expect = 1e-14
Identities = 41/113 (36%), Positives = 59/113 (51%)
Frame = +3
Query: 211 RDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEASSSSARVMPPALWMKLWKADAVPQCCE 270
++D WP T +G Y++++GY+ + K SSS+A + P +W KA +P+C E
Sbjct: 168 KNDVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVW----KAPTLPRCRE 335
Query: 271 TAWRACLDILPVRSILHRRGVVGNPCCPRCSEVEETVHHALFSCPLVRMIWFA 323
RA L ILP RS L RG+ + CP C E+ L P+V WFA
Sbjct: 336 LIGRAFLKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWWFA 494
>BP075797
Length = 504
Score = 70.9 bits (172), Expect = 5e-13
Identities = 42/129 (32%), Positives = 64/129 (49%)
Frame = -2
Query: 436 VMRNNHGEVLAAATTELGPVLSPVLAEALGMRWALRLATKLGFRRIWIETDCLELYTFWN 495
+ N+ G+ + A++ L P +AEAL +R + L FR I +E+DCL+L W+
Sbjct: 473 IFYNHEGKAIIASSFHLLVAYEPAIAEALSLRRTITLPQDENFRIIELESDCLQLVHAWD 294
Query: 496 RQGGEFSHLATVVFDCRSLLPNFDVFNFTFVRRTSNGAADALARLAFHYGCMIWIEEAPS 555
R +LA++V DC+ L D + R N AD LA+LAF Y W+ P
Sbjct: 293 RSVPHPHYLASIVQDCKDLSSFSDSCSLKHSSRKINEVADHLAKLAFVYQDHFWVGIDPP 114
Query: 556 EITSITQDD 564
+ + Q D
Sbjct: 113 ATSLLLQPD 87
>AV767121
Length = 525
Score = 68.9 bits (167), Expect = 2e-12
Identities = 33/97 (34%), Positives = 53/97 (54%)
Frame = +2
Query: 3 FKITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGC 62
F I + A+P + +S F L G+ R++ F WGG + + +KW +C+PK
Sbjct: 47 FLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENKIA*VKWTDVCKPKEL 226
Query: 63 GGIGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKA 99
GG+G +D FN ALL K WR +T+ S+ ++ +A
Sbjct: 227 GGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEA 337
>TC13259
Length = 506
Score = 67.8 bits (164), Expect = 5e-12
Identities = 38/118 (32%), Positives = 63/118 (53%)
Frame = +1
Query: 443 EVLAAATTELGPVLSPVLAEALGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFS 502
+VLA A+++ +S +EA+ +RW L+L+ +LGF + +E D + W S
Sbjct: 55 QVLATASSKWPRTVSVATSEAMALRWGLQLSLELGFFEVEVEIDNQVVVNSWKGTKKHVS 234
Query: 503 HLATVVFDCRSLLPNFDVFNFTFVRRTSNGAADALARLAFHYGCMIWIEEAPSEITSI 560
+LA V+ D + F F+ +V R S+ AAD LA+ A C + IEE P+ + +
Sbjct: 235 YLANVIADVVRISQCFRFFSLAYVPRLSHLAADYLAQFALSDYCFVGIEEHPAGLAGV 408
>CN825238
Length = 692
Score = 65.9 bits (159), Expect = 2e-11
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Frame = +3
Query: 176 LMVTNGGCWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI* 235
L++ N W+ ++ L TA I SIPL + + W +R+G +S R+ Y I
Sbjct: 297 LLIPNARRWNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYNI- 473
Query: 236 KKFSEGEASSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNP 295
+ E + SSS+A P W KLW+ + A+R +I+P R L RRG+
Sbjct: 474 QVAKEMQTSSSAASSFP---WKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAVQN 644
Query: 296 CCPRCS-EVEETVHH 309
CP C+ ++ E++ H
Sbjct: 645 ECPTCNHQIPESMSH 689
>TC17368
Length = 563
Score = 45.4 bits (106), Expect(2) = 2e-11
Identities = 23/55 (41%), Positives = 31/55 (55%)
Frame = +1
Query: 409 WSRPLSGVCKMNIDASVTSSKEAGAGMVMRNNHGEVLAAATTELGPVLSPVLAEA 463
W P G +N AS + AG G++ RN G+VLA AT + V SPV+A+A
Sbjct: 55 WKPPAQGSINVNFGASFKAGVGAGFGLIARNGSGQVLAIATNLIVDVSSPVVAQA 219
Score = 40.0 bits (92), Expect(2) = 2e-11
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 467 RWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTFV 526
RWA+ L LGF + E DC L+ W + +L+ +V D L F+ +F +V
Sbjct: 231 RWAIELTMDLGFSGVIFENDC*VLHCAWISKLNSPPYLSFIVQDYWFLSFGFNSCSFVYV 410
Query: 527 RRTSNGAADALARLAF 542
+R N A + L +
Sbjct: 411 KRQCNAVATLVDLLPY 458
>TC9793
Length = 568
Score = 65.5 bits (158), Expect = 2e-11
Identities = 39/120 (32%), Positives = 61/120 (50%)
Frame = +2
Query: 409 WSRPLSGVCKMNIDASVTSSKEAGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRW 468
W P G+ K+NIDA + S G +V R+++ +L AAT + P LAEAL +RW
Sbjct: 62 WEPPPEGIIKVNIDAGWSGSCSTGFSLVARSHNAVMLVAATHLEETQIEPTLAEALALRW 241
Query: 469 ALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTFVRR 528
L + ++ RI +E+ L + + Q + + VV+D R L F+ NF + R
Sbjct: 242 CLSMIKEMEMERIIVESYSLVVLNTLH-QKTKRPDIELVVYDSRELAAEFNFINFKHIGR 418
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 65.1 bits (157), Expect = 3e-11
Identities = 60/194 (30%), Positives = 94/194 (47%), Gaps = 24/194 (12%)
Frame = -3
Query: 321 WFASPL--------NLRFDE---EGSVHDFFLSFLATADTNIAGIFLAVLYSVWQARNEL 369
WF SPL NLRFD E S F L+ + ++A + L+++W+ RN +
Sbjct: 1116 WFGSPLQWSIEPGGNLRFDRWFVERS--QFILNHSLNHEEDLATLSFT-LWAIWKNRNRV 946
Query: 370 LFKWKDSS-------IDQLLQRASSLRPSR----VLLDDGPRAVQVLPSSWSRPLSGVCK 418
+F+ ++ + I + Q A+ + S+ + SW P GV K
Sbjct: 945 IFQLEEPNPVNTIFQIRHMQQDANLMSTSQSNKQTTRERNINVTSARDRSWRPPPLGVYK 766
Query: 419 MNIDASVTS-SKEAGAGMVMRNNHGEVLAA-ATTELGPVLSPVLAEALGMRWALRLATKL 476
+N DAS + S G+V+R+N G +++ A+ L P SP+++EAL +R L LA L
Sbjct: 765 LNSDASWKAPSPSCTVGVVIRDNLGLLISGTASRPLAP--SPIVSEALALREGLILARSL 592
Query: 477 GFRRIWIETDCLEL 490
G RI E+DC L
Sbjct: 591 GLDRILSESDCQPL 550
>CB827358
Length = 453
Score = 65.1 bits (157), Expect = 3e-11
Identities = 38/109 (34%), Positives = 56/109 (50%)
Frame = +2
Query: 339 FFLSFLATADTNIAGIFLAVLYSVWQARNELLFKWKDSSIDQLLQRASSLRPSRVLLDDG 398
F L FL AD+++ ++W+A N+L+F+ + +QRA+S+ V D
Sbjct: 125 FLLQFLVEADSDVVASCQMASCALWEAHNKLIFQEVPFRCEAAIQRATSMSQVDVSTVDP 304
Query: 399 PRAVQVLPSSWSRPLSGVCKMNIDASVTSSKEAGAGMVMRNNHGEVLAA 447
V + W RP GV K+N D S S +G GMV RN+ G +LAA
Sbjct: 305 SANGPVHDAIWRRPPRGVFKVNFDGSWKSDSVSGIGMVARNHDGLILAA 451
Score = 38.1 bits (87), Expect = 0.004
Identities = 21/61 (34%), Positives = 30/61 (48%)
Frame = +3
Query: 264 AVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEVEETVHHALFSCPLVRMIWFA 323
A+P+C + AW C R L R+GV +P CP C T+ + F L+ M W A
Sbjct: 9 ALPRCKDLAWCVCC-----R*SLWRKGVNSDPSCPLCGNEF*TIFYCSFWWKLIVMSWRA 173
Query: 324 S 324
+
Sbjct: 174 A 176
>AV780729
Length = 475
Score = 42.4 bits (98), Expect(2) = 4e-11
Identities = 24/43 (55%), Positives = 28/43 (64%)
Frame = +3
Query: 434 GMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRWALRLATKL 476
GMV RN E+LA+ T LSP+LAEA RWALRLA +L
Sbjct: 345 GMVARNYECEILASVTAYPVTSLSPLLAEAGCFRWALRLAMEL 473
Score = 42.4 bits (98), Expect(2) = 4e-11
Identities = 27/83 (32%), Positives = 46/83 (54%), Gaps = 3/83 (3%)
Frame = +1
Query: 353 GIFLAVLYSVWQARNELLFKWKDSSIDQLLQRASSL--RPSRVLLDDGP-RAVQVLPSSW 409
G+ + Y++ +ARN+ F+ K S +++QR+ L P L + P R VQ+ ++W
Sbjct: 100 GLIQTLCYTL*EARNKGRFERKVFSHLEVVQRSQRLLRHPRAALHEQNPSRMVQL--ATW 273
Query: 410 SRPLSGVCKMNIDASVTSSKEAG 432
RP GVC +N DA+ + +G
Sbjct: 274 RRPTQGVCMVNFDATFEDGRASG 342
>BP071404
Length = 394
Score = 63.2 bits (152), Expect = 1e-10
Identities = 31/80 (38%), Positives = 49/80 (60%)
Frame = -2
Query: 444 VLAAATTELGPVLSPVLAEALGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSH 503
+L AA+ GP L P++AEA M+W++ L LGF+ + +ETDCL L+ W + S+
Sbjct: 390 LLVAASYYAGPSLDPLVAEAACMKWSMELCRMLGFQSLVLETDCLLLHQIWTARTLPKSY 211
Query: 504 LATVVFDCRSLLPNFDVFNF 523
+++ DCR L F +FN+
Sbjct: 210 AGSIMEDCRMLASGF-LFNY 154
>BP068506
Length = 434
Score = 54.3 bits (129), Expect(2) = 6e-10
Identities = 34/95 (35%), Positives = 46/95 (47%), Gaps = 2/95 (2%)
Frame = -1
Query: 468 WALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSH--LATVVFDCRSLLPNFDVFNFTF 525
W L K GFR + E DCLE+ ++ SH L+ V+ +C+ L F F
Sbjct: 338 WDCDLRWKAGFRNLETEMDCLEVVHSFHNSNHRSSHSYLSAVLDECKHLKTCFLFFCLNH 159
Query: 526 VRRTSNGAADALARLAFHYGCMIWIEEAPSEITSI 560
V R N A LA+ + + WIE+ PS ITSI
Sbjct: 158 VSRNLNSATHFLAKFSLSHVNQEWIEDTPSCITSI 54
Score = 26.2 bits (56), Expect(2) = 6e-10
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = -3
Query: 442 GEVLAAATTELGPVLSPVLAEALGMRWAL 470
G +AAAT + P A+ALG+R+A+
Sbjct: 405 GRCMAAATRCFSSIPDPATAKALGLRFAV 319
>AV768060
Length = 416
Score = 57.4 bits (137), Expect = 6e-09
Identities = 34/97 (35%), Positives = 50/97 (51%)
Frame = -3
Query: 458 PVLAEALGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPN 517
P++AEA+ RWAL LA G + +DC +L ++ EF LA ++ DC L+ +
Sbjct: 300 PLIAEAMCFRWALNLAANWGLDSLVFSSDCQQLVKAFHCPS-EFPSLAHIMLDCTQLVNS 124
Query: 518 FDVFNFTFVRRTSNGAADALARLAFHYGCMIWIEEAP 554
F F+F F R +N A ALA + Y W + P
Sbjct: 123 FRNFSFCFEYRQTNRVAHALAAESHLYKDCEWWGDPP 13
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.139 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,339,910
Number of Sequences: 28460
Number of extensions: 231380
Number of successful extensions: 1372
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of query: 565
length of database: 4,897,600
effective HSP length: 95
effective length of query: 470
effective length of database: 2,193,900
effective search space: 1031133000
effective search space used: 1031133000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0118c.1