Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0118a.3
         (328 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP047269                                                              408  e-115
TC16358 similar to UP|Q9LG22 (Q9LG22) F14J16.15, partial (16%)         65  2e-11
TC10948 similar to UP|Q9FXF4 (Q9FXF4) F1N18.17 protein, partial ...    45  2e-05
TC10682 similar to PIR|A86408|A86408 FH protein interacting prot...    30  0.42
TC14281 similar to UP|Q9XHC6 (Q9XHC6) Cytochrome P450 monooxygen...    30  0.55
BP048961                                                               29  0.94
TC15458                                                                28  1.6
AV777422                                                               28  1.6
TC8112 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1...    28  1.6
TC15655 similar to UP|Q8LE99 (Q8LE99) Transketolase-like protein...    28  2.1
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)         28  2.7
CB828526                                                               27  3.6
AW719741                                                               27  3.6
TC12223 homologue to GB|AAK21429.2|16950442|U00052 Rnp (rrm rna ...    27  4.7
AV410336                                                               27  4.7
BP056263                                                               27  6.1
BP039012                                                               27  6.1
TC11700 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F...    27  6.1
CB829525                                                               27  6.1
BP039329                                                               27  6.1

>BP047269 
          Length = 619

 Score =  408 bits (1048), Expect = e-115
 Identities = 204/204 (100%), Positives = 204/204 (100%)
 Frame = +3

Query: 26  CRHEIFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNNRRWRRKTPIKNAVAASSA 85
           CRHEIFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNNRRWRRKTPIKNAVAASSA
Sbjct: 6   CRHEIFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNNRRWRRKTPIKNAVAASSA 185

Query: 86  VLASIHRRITKFFSKLARLSPDRKRASYKILKKTSPQDDSICRTLVFDGGDNDPSPPLPL 145
           VLASIHRRITKFFSKLARLSPDRKRASYKILKKTSPQDDSICRTLVFDGGDNDPSPPLPL
Sbjct: 186 VLASIHRRITKFFSKLARLSPDRKRASYKILKKTSPQDDSICRTLVFDGGDNDPSPPLPL 365

Query: 146 LPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEA 205
           LPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEA
Sbjct: 366 LPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEA 545

Query: 206 LAAKFEVVVFTAALREYASLVLDR 229
           LAAKFEVVVFTAALREYASLVLDR
Sbjct: 546 LAAKFEVVVFTAALREYASLVLDR 617


>TC16358 similar to UP|Q9LG22 (Q9LG22) F14J16.15, partial (16%)
          Length = 877

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
 Frame = +1

Query: 145 LLP---PSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDE 201
           LLP   P   H  T+ LDL+ETL+H             +R    G    +   KRPGVD 
Sbjct: 508 LLPD*LPQEQHVFTLVLDLNETLIH------------YIRTRDTG----WQTFKRPGVDA 639

Query: 202 FLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGR 261
           FLE LA  +E+VV+T     +   V++R+D    + +RL R + K +DGK  +DL    R
Sbjct: 640 FLEHLAQFYEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPATKYQDGKHFRDLEKLNR 819

Query: 262 DLKRVVIVDDNPNSFANQP 280
           +  +V+ +  +      QP
Sbjct: 820 NPAKVLYLSGHA*ESCLQP 876


>TC10948 similar to UP|Q9FXF4 (Q9FXF4) F1N18.17 protein, partial (6%)
          Length = 519

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +2

Query: 239 RLYRDSC-KQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAI 284
           RLYR S    E  + VKDL+   +DL R+VIVD+NP SF  QP+N I
Sbjct: 2   RLYRPSTISTEHREHVKDLTCISKDLCRIVIVDNNPFSFLLQPDNGI 142


>TC10682 similar to PIR|A86408|A86408 FH protein interacting protein FIP1
           [imported] - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (36%)
          Length = 577

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = +3

Query: 137 NDPSPPLPLLPPSISHRRTVFLDLDETLVHSNTAP 171
           N P PPLP LPP   +  T+ L    TL+  N+ P
Sbjct: 177 NPPPPPLPPLPPPPPNPMTLILTPLSTLLTPNSTP 281


>TC14281 similar to UP|Q9XHC6 (Q9XHC6) Cytochrome P450 monooxygenaseCYP93D1,
            partial (97%)
          Length = 1768

 Score = 30.0 bits (66), Expect = 0.55
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 40   PNTKNQAMVSRVKRVPTKSIKDIRRNNNRRWRRKT 74
            P  + + + SR  + PT+S K  RRN +  W+RKT
Sbjct: 983  PCKRVRVVTSRAHKKPTRSQKGQRRNRHCCWQRKT 1087


>BP048961 
          Length = 543

 Score = 29.3 bits (64), Expect = 0.94
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 141 PPLPLLPPSISHRRTVFLDLDETLVHSNTAPPP 173
           PPLPLLPP + H          TL H    PPP
Sbjct: 131 PPLPLLPPPLLH---------HTLPHRFPLPPP 202


>TC15458 
          Length = 525

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 14/23 (60%), Positives = 15/23 (64%)
 Frame = +1

Query: 267 VIVDDNPNSFANQPENAILIRPF 289
           VIVD+NP SF  QP N I   PF
Sbjct: 1   VIVDNNPFSFVLQPVNGIPCIPF 69


>AV777422 
          Length = 555

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 18/43 (41%), Positives = 21/43 (47%)
 Frame = -1

Query: 141 PPLPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPV 183
           P L  LP SI   R   L+ +  L HSN  PPP S     RP+
Sbjct: 393 PYLSTLPQSI---RKEILENESHLPHSNYLPPPTSIQSPRRPL 274


>TC8112 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1 component
           alpha subunit, mitochondrial precursor  (PDHE1-A) ,
           partial (90%)
          Length = 1816

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
 Frame = +1

Query: 140 SPPLPLL----PPSISHRRTVFLDLDETLVHSNTAPPPESF 176
           SPP P      PPS S R T       TL H+ + PPP+SF
Sbjct: 220 SPPTPTQSQSKPPSPSPRTTA------TLPHAPSKPPPQSF 324


>TC15655 similar to UP|Q8LE99 (Q8LE99) Transketolase-like protein, partial
           (17%)
          Length = 575

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 16/35 (45%), Positives = 17/35 (47%)
 Frame = +1

Query: 139 PSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPP 173
           P PP  L PP I H       L   L HSN +PPP
Sbjct: 115 PLPPRLLRPPPIHH------PLPLPLPHSNHSPPP 201


>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
          Length = 1751

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 139 PSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPP 173
           P PPLP  PPS+S   TV      +   + ++PPP
Sbjct: 111 PPPPLPPSPPSLSSAATVPSPPYPSPPAATSSPPP 215


>CB828526 
          Length = 552

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
 Frame = +2

Query: 206 LAAKFEVVVFTAALREYA---SLVLDRVDRNRLVSHRLYRDSCKQE 248
           L  K  V +  + LR+Y    S +LD +D +    H+L  D C+Q+
Sbjct: 71  LLVKHYVTLLASTLRQYGYEISTLLDVLDSSHGKYHQLLLDECRQQ 208


>AW719741 
          Length = 413

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 133 DGGDNDPSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDF 178
           +G +N P PP P  PP  S   ++ + +   L+H    PP   F F
Sbjct: 39  NG*ENPPPPPPPPSPPPSSPLVSILITI-PLLLHHPCQPPSPPFRF 173


>TC12223 homologue to GB|AAK21429.2|16950442|U00052 Rnp (rrm rna binding
           domain) containing protein 4 {Caenorhabditis elegans;} ,
           partial (8%)
          Length = 449

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +2

Query: 136 DNDPSPPLPLLPPSISH----RRTVFLDLDETLV 165
           ++D  PP  L   ++ H    + TV LDLDETLV
Sbjct: 308 EHDSPPPSALEITAVDHHPTQKLTVVLDLDETLV 409


>AV410336 
          Length = 358

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = +1

Query: 105 SPDRKRASYKILKKTSPQD----DSICRTLVFDGGDNDPSPPLPLLPPSISHRRTVFLDL 160
           +P+ K  S      TSP      +S   T  F    + P+PP P   P+ S      L  
Sbjct: 88  TPNPKSPSSSSPTPTSPSPHSGRNSSPATTTFTTSTSTPTPPPPSSLPAASSTAASLLPK 267

Query: 161 DETLVHSNTAPPP 173
             T    +++PPP
Sbjct: 268 KPTAPPQHSSPPP 306


>BP056263 
          Length = 389

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 30  IFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNN 67
           IFS  R  P PNT    +++++K  PT+ +   RRN +
Sbjct: 234 IFSQDRLAPGPNTHPNGLIAQIK-PPTQGLG*NRRNRS 344


>BP039012 
          Length = 582

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +1

Query: 141 PPLPLLPPSISH 152
           PPLPLLPP  SH
Sbjct: 187 PPLPLLPPPASH 222


>TC11700 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F9N11_110
           {Arabidopsis thaliana;}, partial (45%)
          Length = 561

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +3

Query: 81  AASSAVLASIHRRITKFFSKLARLSPDRKRASYKILKK-TSPQDDSICRTLVFDGGDNDP 139
           A   +V+   H  I   F+ L   +  R R S   L+  +SP D  +            P
Sbjct: 6   AWEESVVRKCHTAIPYPFTHLPNPTSTRSRISSTHLRPPSSPPDHPVLHA--------PP 161

Query: 140 SPPLPLLPPSISHRRTVFL 158
           SP  PLLP SI     +FL
Sbjct: 162 SPSPPLLPSSIPTSLLLFL 218


>CB829525 
          Length = 432

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 7/82 (8%)
 Frame = +1

Query: 55  PTKSIKDIRRNNNRRWRRKTPIKNAVAASSAVLASI-HRRITKFFSKLARLS----PDRK 109
           P  ++ D    + RRWRRK P    V   SA  A++    + KF  +L   S     +R 
Sbjct: 16  PKYAVSDSVVVHRRRWRRKGPSSLTVTMDSANAAALGSPEMEKFLCELLLDSTQPISERF 195

Query: 110 RASYKI--LKKTSPQDDSICRT 129
           RA + +  LK  +P++  I  T
Sbjct: 196 RALFSLRNLKGPAPRNALILAT 261


>BP039329 
          Length = 479

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
 Frame = +3

Query: 47  MVSRVKRVPTKSIKDIRRNNNRRW---RRKTPIKNAVAA---------SSAVLASIHRRI 94
           ++ RV + PTK+I  +   N R W     +   KN V A         +S +LAS    +
Sbjct: 210 LLHRVVKHPTKTIIGVNAFNRRLWVQAMMEDASKNGVLAVQSLRNNIMASTLLASTAIML 389

Query: 95  TKFFSKLARLSPDRKRASYKI 115
           T   + L      RK   Y++
Sbjct: 390 TSLIAVLMGSGSQRKSVVYEV 452


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,115,767
Number of Sequences: 28460
Number of extensions: 96814
Number of successful extensions: 741
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of query: 328
length of database: 4,897,600
effective HSP length: 91
effective length of query: 237
effective length of database: 2,307,740
effective search space: 546934380
effective search space used: 546934380
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)


Lotus: description of TM0118a.3