BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0118a.3
(328 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP047269 408 e-115
TC16358 similar to UP|Q9LG22 (Q9LG22) F14J16.15, partial (16%) 65 2e-11
TC10948 similar to UP|Q9FXF4 (Q9FXF4) F1N18.17 protein, partial ... 45 2e-05
TC10682 similar to PIR|A86408|A86408 FH protein interacting prot... 30 0.42
TC14281 similar to UP|Q9XHC6 (Q9XHC6) Cytochrome P450 monooxygen... 30 0.55
BP048961 29 0.94
TC15458 28 1.6
AV777422 28 1.6
TC8112 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1... 28 1.6
TC15655 similar to UP|Q8LE99 (Q8LE99) Transketolase-like protein... 28 2.1
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 28 2.7
CB828526 27 3.6
AW719741 27 3.6
TC12223 homologue to GB|AAK21429.2|16950442|U00052 Rnp (rrm rna ... 27 4.7
AV410336 27 4.7
BP056263 27 6.1
BP039012 27 6.1
TC11700 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F... 27 6.1
CB829525 27 6.1
BP039329 27 6.1
>BP047269
Length = 619
Score = 408 bits (1048), Expect = e-115
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 26 CRHEIFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNNRRWRRKTPIKNAVAASSA 85
CRHEIFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNNRRWRRKTPIKNAVAASSA
Sbjct: 6 CRHEIFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNNRRWRRKTPIKNAVAASSA 185
Query: 86 VLASIHRRITKFFSKLARLSPDRKRASYKILKKTSPQDDSICRTLVFDGGDNDPSPPLPL 145
VLASIHRRITKFFSKLARLSPDRKRASYKILKKTSPQDDSICRTLVFDGGDNDPSPPLPL
Sbjct: 186 VLASIHRRITKFFSKLARLSPDRKRASYKILKKTSPQDDSICRTLVFDGGDNDPSPPLPL 365
Query: 146 LPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEA 205
LPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEA
Sbjct: 366 LPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEA 545
Query: 206 LAAKFEVVVFTAALREYASLVLDR 229
LAAKFEVVVFTAALREYASLVLDR
Sbjct: 546 LAAKFEVVVFTAALREYASLVLDR 617
>TC16358 similar to UP|Q9LG22 (Q9LG22) F14J16.15, partial (16%)
Length = 877
Score = 64.7 bits (156), Expect = 2e-11
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Frame = +1
Query: 145 LLP---PSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDE 201
LLP P H T+ LDL+ETL+H +R G + KRPGVD
Sbjct: 508 LLPD*LPQEQHVFTLVLDLNETLIH------------YIRTRDTG----WQTFKRPGVDA 639
Query: 202 FLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGR 261
FLE LA +E+VV+T + V++R+D + +RL R + K +DGK +DL R
Sbjct: 640 FLEHLAQFYEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPATKYQDGKHFRDLEKLNR 819
Query: 262 DLKRVVIVDDNPNSFANQP 280
+ +V+ + + QP
Sbjct: 820 NPAKVLYLSGHA*ESCLQP 876
>TC10948 similar to UP|Q9FXF4 (Q9FXF4) F1N18.17 protein, partial (6%)
Length = 519
Score = 44.7 bits (104), Expect = 2e-05
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +2
Query: 239 RLYRDSC-KQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAI 284
RLYR S E + VKDL+ +DL R+VIVD+NP SF QP+N I
Sbjct: 2 RLYRPSTISTEHREHVKDLTCISKDLCRIVIVDNNPFSFLLQPDNGI 142
>TC10682 similar to PIR|A86408|A86408 FH protein interacting protein FIP1
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (36%)
Length = 577
Score = 30.4 bits (67), Expect = 0.42
Identities = 15/35 (42%), Positives = 19/35 (53%)
Frame = +3
Query: 137 NDPSPPLPLLPPSISHRRTVFLDLDETLVHSNTAP 171
N P PPLP LPP + T+ L TL+ N+ P
Sbjct: 177 NPPPPPLPPLPPPPPNPMTLILTPLSTLLTPNSTP 281
>TC14281 similar to UP|Q9XHC6 (Q9XHC6) Cytochrome P450 monooxygenaseCYP93D1,
partial (97%)
Length = 1768
Score = 30.0 bits (66), Expect = 0.55
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 40 PNTKNQAMVSRVKRVPTKSIKDIRRNNNRRWRRKT 74
P + + + SR + PT+S K RRN + W+RKT
Sbjct: 983 PCKRVRVVTSRAHKKPTRSQKGQRRNRHCCWQRKT 1087
>BP048961
Length = 543
Score = 29.3 bits (64), Expect = 0.94
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 141 PPLPLLPPSISHRRTVFLDLDETLVHSNTAPPP 173
PPLPLLPP + H TL H PPP
Sbjct: 131 PPLPLLPPPLLH---------HTLPHRFPLPPP 202
>TC15458
Length = 525
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/23 (60%), Positives = 15/23 (64%)
Frame = +1
Query: 267 VIVDDNPNSFANQPENAILIRPF 289
VIVD+NP SF QP N I PF
Sbjct: 1 VIVDNNPFSFVLQPVNGIPCIPF 69
>AV777422
Length = 555
Score = 28.5 bits (62), Expect = 1.6
Identities = 18/43 (41%), Positives = 21/43 (47%)
Frame = -1
Query: 141 PPLPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPV 183
P L LP SI R L+ + L HSN PPP S RP+
Sbjct: 393 PYLSTLPQSI---RKEILENESHLPHSNYLPPPTSIQSPRRPL 274
>TC8112 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1 component
alpha subunit, mitochondrial precursor (PDHE1-A) ,
partial (90%)
Length = 1816
Score = 28.5 bits (62), Expect = 1.6
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
Frame = +1
Query: 140 SPPLPLL----PPSISHRRTVFLDLDETLVHSNTAPPPESF 176
SPP P PPS S R T TL H+ + PPP+SF
Sbjct: 220 SPPTPTQSQSKPPSPSPRTTA------TLPHAPSKPPPQSF 324
>TC15655 similar to UP|Q8LE99 (Q8LE99) Transketolase-like protein, partial
(17%)
Length = 575
Score = 28.1 bits (61), Expect = 2.1
Identities = 16/35 (45%), Positives = 17/35 (47%)
Frame = +1
Query: 139 PSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPP 173
P PP L PP I H L L HSN +PPP
Sbjct: 115 PLPPRLLRPPPIHH------PLPLPLPHSNHSPPP 201
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 139 PSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPP 173
P PPLP PPS+S TV + + ++PPP
Sbjct: 111 PPPPLPPSPPSLSSAATVPSPPYPSPPAATSSPPP 215
>CB828526
Length = 552
Score = 27.3 bits (59), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Frame = +2
Query: 206 LAAKFEVVVFTAALREYA---SLVLDRVDRNRLVSHRLYRDSCKQE 248
L K V + + LR+Y S +LD +D + H+L D C+Q+
Sbjct: 71 LLVKHYVTLLASTLRQYGYEISTLLDVLDSSHGKYHQLLLDECRQQ 208
>AW719741
Length = 413
Score = 27.3 bits (59), Expect = 3.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 133 DGGDNDPSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDF 178
+G +N P PP P PP S ++ + + L+H PP F F
Sbjct: 39 NG*ENPPPPPPPPSPPPSSPLVSILITI-PLLLHHPCQPPSPPFRF 173
>TC12223 homologue to GB|AAK21429.2|16950442|U00052 Rnp (rrm rna binding
domain) containing protein 4 {Caenorhabditis elegans;} ,
partial (8%)
Length = 449
Score = 26.9 bits (58), Expect = 4.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 136 DNDPSPPLPLLPPSISH----RRTVFLDLDETLV 165
++D PP L ++ H + TV LDLDETLV
Sbjct: 308 EHDSPPPSALEITAVDHHPTQKLTVVLDLDETLV 409
>AV410336
Length = 358
Score = 26.9 bits (58), Expect = 4.7
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Frame = +1
Query: 105 SPDRKRASYKILKKTSPQD----DSICRTLVFDGGDNDPSPPLPLLPPSISHRRTVFLDL 160
+P+ K S TSP +S T F + P+PP P P+ S L
Sbjct: 88 TPNPKSPSSSSPTPTSPSPHSGRNSSPATTTFTTSTSTPTPPPPSSLPAASSTAASLLPK 267
Query: 161 DETLVHSNTAPPP 173
T +++PPP
Sbjct: 268 KPTAPPQHSSPPP 306
>BP056263
Length = 389
Score = 26.6 bits (57), Expect = 6.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 30 IFSSLRFLPYPNTKNQAMVSRVKRVPTKSIKDIRRNNN 67
IFS R P PNT +++++K PT+ + RRN +
Sbjct: 234 IFSQDRLAPGPNTHPNGLIAQIK-PPTQGLG*NRRNRS 344
>BP039012
Length = 582
Score = 26.6 bits (57), Expect = 6.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 141 PPLPLLPPSISH 152
PPLPLLPP SH
Sbjct: 187 PPLPLLPPPASH 222
>TC11700 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F9N11_110
{Arabidopsis thaliana;}, partial (45%)
Length = 561
Score = 26.6 bits (57), Expect = 6.1
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3
Query: 81 AASSAVLASIHRRITKFFSKLARLSPDRKRASYKILKK-TSPQDDSICRTLVFDGGDNDP 139
A +V+ H I F+ L + R R S L+ +SP D + P
Sbjct: 6 AWEESVVRKCHTAIPYPFTHLPNPTSTRSRISSTHLRPPSSPPDHPVLHA--------PP 161
Query: 140 SPPLPLLPPSISHRRTVFL 158
SP PLLP SI +FL
Sbjct: 162 SPSPPLLPSSIPTSLLLFL 218
>CB829525
Length = 432
Score = 26.6 bits (57), Expect = 6.1
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 7/82 (8%)
Frame = +1
Query: 55 PTKSIKDIRRNNNRRWRRKTPIKNAVAASSAVLASI-HRRITKFFSKLARLS----PDRK 109
P ++ D + RRWRRK P V SA A++ + KF +L S +R
Sbjct: 16 PKYAVSDSVVVHRRRWRRKGPSSLTVTMDSANAAALGSPEMEKFLCELLLDSTQPISERF 195
Query: 110 RASYKI--LKKTSPQDDSICRT 129
RA + + LK +P++ I T
Sbjct: 196 RALFSLRNLKGPAPRNALILAT 261
>BP039329
Length = 479
Score = 26.6 bits (57), Expect = 6.1
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Frame = +3
Query: 47 MVSRVKRVPTKSIKDIRRNNNRRW---RRKTPIKNAVAA---------SSAVLASIHRRI 94
++ RV + PTK+I + N R W + KN V A +S +LAS +
Sbjct: 210 LLHRVVKHPTKTIIGVNAFNRRLWVQAMMEDASKNGVLAVQSLRNNIMASTLLASTAIML 389
Query: 95 TKFFSKLARLSPDRKRASYKI 115
T + L RK Y++
Sbjct: 390 TSLIAVLMGSGSQRKSVVYEV 452
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,115,767
Number of Sequences: 28460
Number of extensions: 96814
Number of successful extensions: 741
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of query: 328
length of database: 4,897,600
effective HSP length: 91
effective length of query: 237
effective length of database: 2,307,740
effective search space: 546934380
effective search space used: 546934380
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0118a.3