TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0117b.7
         (281 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15570 similar to GB|AAP21363.1|30102890|BT006555 At4g38290 {Ar...   255  7e-69
BP060952                                                              180  3e-46
AV411740                                                              125  6e-30
BP040850                                                               33  0.054
AV770043                                                               27  0.13
TC18689                                                                30  0.46
TC14593 similar to UP|Q8H1U3 (Q8H1U3) CDC26, partial (31%)             28  1.7
TC20032                                                                27  3.0
BP041637                                                               27  3.0
BP055061                                                               27  3.9
BP069941                                                               27  3.9
BP041884                                                               27  5.1
TC16757 weakly similar to UP|Q9SBQ2 (Q9SBQ2) Anthocyanin 5-O-glu...    27  5.1
TC15704 similar to UP|O22265 (O22265) Expressed protein (At2g474...    26  6.6
AV410993                                                               26  6.6
TC16241 weakly similar to UP|Q91TH4 (Q91TH4) T122, partial (7%)        26  6.6
AV409919                                                               26  6.6
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras...    26  8.7
BI420041                                                               26  8.7
TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structura...    26  8.7

>TC15570 similar to GB|AAP21363.1|30102890|BT006555 At4g38290 {Arabidopsis
           thaliana;}, partial (41%)
          Length = 642

 Score =  255 bits (651), Expect = 7e-69
 Identities = 130/130 (100%), Positives = 130/130 (100%)
 Frame = +1

Query: 152 PSVPISCGKSTMKLAPVESNCVTTSSGPTIGNPKGLIDMQWEERYQQLQMLLRKLDQSDQ 211
           PSVPISCGKSTMKLAPVESNCVTTSSGPTIGNPKGLIDMQWEERYQQLQMLLRKLDQSDQ
Sbjct: 1   PSVPISCGKSTMKLAPVESNCVTTSSGPTIGNPKGLIDMQWEERYQQLQMLLRKLDQSDQ 180

Query: 212 VEYVQMLQSLSSVELSRHAVELEKRAIQLSLEEAKELQRVAVLNVLGKSAKKFKAPADHD 271
           VEYVQMLQSLSSVELSRHAVELEKRAIQLSLEEAKELQRVAVLNVLGKSAKKFKAPADHD
Sbjct: 181 VEYVQMLQSLSSVELSRHAVELEKRAIQLSLEEAKELQRVAVLNVLGKSAKKFKAPADHD 360

Query: 272 ECSDKLKTSS 281
           ECSDKLKTSS
Sbjct: 361 ECSDKLKTSS 390


>BP060952 
          Length = 545

 Score =  180 bits (456), Expect = 3e-46
 Identities = 88/88 (100%), Positives = 88/88 (100%)
 Frame = +3

Query: 1   MDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLS 60
           MDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLS
Sbjct: 282 MDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLS 461

Query: 61  DYPVNHHLQQSPGNSTANGHLVYVRRKS 88
           DYPVNHHLQQSPGNSTANGHLVYVRRKS
Sbjct: 462 DYPVNHHLQQSPGNSTANGHLVYVRRKS 545


>AV411740 
          Length = 412

 Score =  125 bits (315), Expect = 6e-30
 Identities = 62/62 (100%), Positives = 62/62 (100%)
 Frame = +1

Query: 1   MDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLS 60
           MDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLS
Sbjct: 226 MDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLS 405

Query: 61  DY 62
           DY
Sbjct: 406 DY 411


>BP040850 
          Length = 588

 Score = 33.1 bits (74), Expect = 0.054
 Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
 Frame = +1

Query: 60  SDYPVNHHLQQSPGNSTA---NGHLVYVRRKSEAELGKCAAFENP--TNNAFCQPPRQLC 114
           S Y  +HH  Q    ST+   + HL      S      C   E P  T +A C P R L 
Sbjct: 124 SRYL*SHHSLQLHTPSTSLRRDNHLSPTHLTSSPSEPPCCLPEKPPPTTSAACSPGRVLM 303

Query: 115 SEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCGKSTMKL--APVESNC 172
           S    + P P L  P  S F +  PF    +++SS +P  P++  +++     +P ++  
Sbjct: 304 SFVTPSYPSPSL-APMPSSFSSLNPF---KAVTSSPKP-YPLARSRTSRIC*NSPWKAGR 468

Query: 173 VTTS--SGPTIGNPKGLIDMQWEERYQQL 199
           +T S  S P     KG    +W+     L
Sbjct: 469 LTPSPLSSPPAETRKGSR*FRWQSELGSL 555


>AV770043 
          Length = 532

 Score = 27.3 bits (59), Expect(2) = 0.13
 Identities = 15/51 (29%), Positives = 25/51 (48%)
 Frame = -1

Query: 103 NNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPS 153
           N++   P ++LC +    +P         S +P+  P P +SS  SSG P+
Sbjct: 154 NSSIHPPNKRLCLQFSHRIPSSTR*PHPQSSYPSHPPAPESSSPCSSGGPT 2



 Score = 23.1 bits (48), Expect(2) = 0.13
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 57  RPLSDYPVNHHLQQSP 72
           +P   YP+ HHL Q P
Sbjct: 296 KPPPSYPLPHHLPQMP 249


>TC18689 
          Length = 397

 Score = 30.0 bits (66), Expect = 0.46
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 129 PNVSCFPAFAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSG 178
           PN    P F P    SSI S+    +PI C  +T  +  + SN  TTS+G
Sbjct: 189 PNPHARPMFQP---PSSIMSTSCELLPIQCCTTTTTIRGLYSNYKTTSNG 49


>TC14593 similar to UP|Q8H1U3 (Q8H1U3) CDC26, partial (31%)
          Length = 1112

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
 Frame = +3

Query: 100 NPTNNA-FCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRP------ 152
           NP+ +A F  P     S   +A P P+L   +  C P     P  S ISSS  P      
Sbjct: 210 NPSPSAPFLSPLPIWRSRSSSASPTPKLTAKSPPCSPPSTSPPTASIISSSTAPPPSSPQ 389

Query: 153 SVPISCGKST 162
           S P S   ST
Sbjct: 390 SAPFSGSDST 419


>TC20032 
          Length = 655

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 143 TSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGP 179
           T+ +S SG  S P +C KST  +A   S C + S+ P
Sbjct: 146 TAGVSGSGSES-PAACRKSTASVAWKLSTCPSPSASP 39


>BP041637 
          Length = 457

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 134 FPAFAPFPLTSSISSSGRPSVP--ISCGKS 161
           F +F+ F  T S+SSS  PS+P  IS  KS
Sbjct: 364 FTSFSSFTFTFSLSSSPSPSIPSLISLSKS 453


>BP055061 
          Length = 544

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = -3

Query: 192 WEERYQQLQMLLRKLDQSDQVEYVQMLQSLS 222
           W+E  +     LRKL  S QV  +QMLQ +S
Sbjct: 389 WKEWRKS*HQKLRKLKLSPQVVLIQMLQKVS 297


>BP069941 
          Length = 304

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 9/22 (40%), Positives = 14/22 (62%)
 Frame = -2

Query: 101 PTNNAFCQPPRQLCSEEETALP 122
           P N +FC  PR++C E+   +P
Sbjct: 297 PLNRSFCMIPRKVCCEKARFIP 232


>BP041884 
          Length = 489

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 22/67 (32%), Positives = 29/67 (42%), Gaps = 7/67 (10%)
 Frame = +3

Query: 112 QLCSEEETALPKPQLKE--PNVSCFP---AFAPFPLTSSISSSGRPS--VPISCGKSTMK 164
           QLC       P P +K    + +C P   A AP P+T  IS+  RPS   P+        
Sbjct: 6   QLCKNPR---PNPDIKTLFTDHTCSPPNGAHAPTPVTLPISAGARPSFFAPLGAHGGPFT 176

Query: 165 LAPVESN 171
            AP  +N
Sbjct: 177 PAPPAAN 197


>TC16757 weakly similar to UP|Q9SBQ2 (Q9SBQ2) Anthocyanin
           5-O-glucosyltransferase, partial (19%)
          Length = 638

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 4/35 (11%)
 Frame = -3

Query: 115 SEEETALPKPQLKEPNVSCF----PAFAPFPLTSS 145
           SEE  + P    K  N S F     AF+PFP+T+S
Sbjct: 273 SEEPPSFPASIAKPLNFSAFLLTSSAFSPFPITAS 169


>TC15704 similar to UP|O22265 (O22265) Expressed protein
           (At2g47450/T30B22.25), partial (25%)
          Length = 664

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 18/48 (37%), Positives = 24/48 (49%)
 Frame = -3

Query: 134 FPAFAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGPTI 181
           +  F+PFPL S+ISS+   S            AP  S  +TT S PT+
Sbjct: 152 YSKFSPFPLRSNISSTSAYS----------NTAP--SKTLTTPSSPTL 45


>AV410993 
          Length = 427

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 28/92 (30%), Positives = 36/92 (38%), Gaps = 1/92 (1%)
 Frame = -2

Query: 68  LQQSPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLK 127
           L ++P  S  N  ++ +   + +    C  F NP N AF  P                 K
Sbjct: 249 LSENPRRSMRNFFILNIFPFTSSISFICGCF-NPINRAFFSP-----------------K 124

Query: 128 EPNV-SCFPAFAPFPLTSSISSSGRPSVPISC 158
            P+  S F  FA F  T SISS  R    ISC
Sbjct: 123 FPSTASIFFFFAKFSSTGSISSRDRIIDAISC 28


>TC16241 weakly similar to UP|Q91TH4 (Q91TH4) T122, partial (7%)
          Length = 799

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 21/83 (25%), Positives = 31/83 (37%)
 Frame = +1

Query: 102 TNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCGKS 161
           +N+   QPP        T +  P     + S +P+  P  L  SIS+S     P S    
Sbjct: 184 SNSPTSQPPVAQTPRAVTPISSPSSSPTSNSPYPSTNPPSLAPSISTSPPALTPAS---- 351

Query: 162 TMKLAPVESNCVTTSSGPTIGNP 184
                PV +     S  P+  +P
Sbjct: 352 ----TPVPATASPPSQSPSAESP 408


>AV409919 
          Length = 423

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 13/47 (27%), Positives = 20/47 (41%)
 Frame = +3

Query: 109 PPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVP 155
           PP        + LP P L  P +   P+ +P   +SS + + R   P
Sbjct: 108 PPANASKPRTSKLPPPPLPSPTLYFSPSSSPSSTSSSTAGARRFGTP 248


>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
           precursor  , partial (81%)
          Length = 1355

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 23/87 (26%), Positives = 32/87 (36%)
 Frame = +2

Query: 90  AELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSS 149
           AEL  C     P+++    PP        T +P P L            P PL  +    
Sbjct: 236 AELEFCQWLPYPSHHHHLSPPH-------TTMPPPTLSYA--------PPLPLNYAPPPL 370

Query: 150 GRPSVPISCGKSTMKLAPVESNCVTTS 176
             PSVP    K+T + +P      T+S
Sbjct: 371 PNPSVPSPSPKTTSRDSPPTRPSTTSS 451


>BI420041 
          Length = 452

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 16/58 (27%), Positives = 24/58 (40%)
 Frame = -3

Query: 135 PAFAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGPTIGNPKGLIDMQW 192
           P   P P   ++SSS   +   SC  S+   +P  S+  + SS     +    ID  W
Sbjct: 405 PPEPPSPA*GTLSSSSSSNSSSSCSSSS*YSSPSSSSSFSGSS*SNSSSSSSSIDTSW 232


>TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structural protein
           pp78/81, partial (5%)
          Length = 710

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 123 KPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVP 155
           K  L +PN SC    +  P T SIS + + ++P
Sbjct: 182 KSILSDPNPSCSSERSILPTTCSISGNPKSAIP 280


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.310    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,714,866
Number of Sequences: 28460
Number of extensions: 71634
Number of successful extensions: 346
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of query: 281
length of database: 4,897,600
effective HSP length: 89
effective length of query: 192
effective length of database: 2,364,660
effective search space: 454014720
effective search space used: 454014720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)