BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0117b.4
(482 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP063085 96 2e-21
CB829110 58 3e-11
BP066024 30 0.67
AV423275 30 1.1
TC7865 homologue to UP|SAHH_ARATH (O23255) Adenosylhomocysteinas... 28 4.3
TC17334 28 4.3
AV420916 27 5.7
BP057667 27 9.7
TC10120 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-... 27 9.7
TC14380 27 9.7
>BP063085
Length = 433
Score = 95.9 bits (237), Expect(2) = 2e-21
Identities = 46/80 (57%), Positives = 57/80 (70%)
Frame = +3
Query: 86 FAMYCFGRYLVACLGGEERTIEFMERQGRSASKTPLLLHHHSHDYKGTVNHPFPLKYFLK 145
FA+YCF RYL+ACLGGE++TI+FMER + S TPLL +++ G V HPFPL FL+
Sbjct: 48 FALYCFERYLIACLGGEDKTIQFMERLSLTDSSTPLLKEAYAY---GVVEHPFPLNCFLR 218
Query: 146 PWILTRRFYQIVKFGIVQYM 165
W L FYQ VK GIVQY+
Sbjct: 219 DWYLGPDFYQSVKXGIVQYV 278
Score = 23.5 bits (49), Expect(2) = 2e-21
Identities = 7/15 (46%), Positives = 12/15 (79%)
Frame = +1
Query: 71 SISVDCGILRDCYES 85
S + +C ++RDCYE+
Sbjct: 4 SAAFNCEVIRDCYEA 48
>CB829110
Length = 573
Score = 58.2 bits (139), Expect(2) = 3e-11
Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 7/190 (3%)
Frame = +2
Query: 29 SMYLLFEHLSAYKNPEEQKFLIGVILMVPCYSIESFVSLVN----PSISVDCGILRDCYE 84
SM L+ EH+ +K P+EQK +I +I+M P Y+++S+V L+N + +++CYE
Sbjct: 5 SMKLISEHVLNWKKPKEQKAIIIIIMMAPLYAVDSYVGLINFFGSETFFTFLDSIKECYE 184
Query: 85 SFAMYCFGRYLVACLG-GEERTIEFMERQGRSASKTPLLLHHHSHDYKGTVNHPFPLKYF 143
+ + F + + L + I E +GR ++H FP+ F
Sbjct: 185 ALVIAKFLALMYSYLNISLSKNIVPDEIKGRE------------------IHHSFPMTLF 310
Query: 144 LKPWI--LTRRFYQIVKFGIVQYMIIKSFTSIMAVILEAFGVYCEGEFKLGCGYPYIAVV 201
+P L +++K+ Q+++++ SI+ + L+ VY I ++
Sbjct: 311 -QPHTTRLDHHTLKLLKYWTWQFVVLRPMCSILMITLQYLEVYPSWINWT------ITII 469
Query: 202 LNFSQSWALY 211
LN S S ALY
Sbjct: 470 LNVSVSLALY 499
Score = 26.6 bits (57), Expect(2) = 3e-11
Identities = 14/27 (51%), Positives = 15/27 (54%)
Frame = +3
Query: 208 WALYCLVQFYTVTKDELAHIKPLAKFL 234
W LV FY V EL KPL+KFL
Sbjct: 489 WHCIXLVVFYHVFAKELEPHKPLSKFL 569
>BP066024
Length = 436
Score = 30.4 bits (67), Expect = 0.67
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = -2
Query: 298 YELMGDRHPGSISVLGDYSADCPLDPDEIRDSERPT 333
+E R PG LG+Y +D + DEI++S PT
Sbjct: 414 HEKSNSRFPGDXLGLGNYGSDADDEDDEIKNSRVPT 307
>AV423275
Length = 405
Score = 29.6 bits (65), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 120 PLLLHHHSHDYKGTVNHPFPLKYFLK 145
PLLLHHH H + +HP P + L+
Sbjct: 353 PLLLHHHHHHHSIQYHHPPPPRQNLR 276
>TC7865 homologue to UP|SAHH_ARATH (O23255) Adenosylhomocysteinase
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) ,
complete
Length = 1852
Score = 27.7 bits (60), Expect = 4.3
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +3
Query: 121 LLLHHHSHDYKGTVNHPFP 139
LL HHH+H + G NH +P
Sbjct: 42 LLNHHHNHGFVGRENHIWP 98
>TC17334
Length = 481
Score = 27.7 bits (60), Expect = 4.3
Identities = 11/37 (29%), Positives = 20/37 (53%)
Frame = +2
Query: 47 KFLIGVILMVPCYSIESFVSLVNPSISVDCGILRDCY 83
+FLI L +P Y I+S ++ N + +++ CY
Sbjct: 86 QFLIRQFLSIPMYDIDSRLTCANMKSRTEISVVKACY 196
>AV420916
Length = 316
Score = 27.3 bits (59), Expect = 5.7
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 11/51 (21%)
Frame = +2
Query: 12 VWATIVASVFLLMTLALSMYL-----------LFEHLSAYKNPEEQKFLIG 51
V+AT + ++L M S +L L EHLSAY N +F++G
Sbjct: 92 VFATGIFCIYLTMPATASAHLKLPRTLSDLRILKEHLSAYANNHPAQFILG 244
>BP057667
Length = 515
Score = 26.6 bits (57), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 437 SDSGISRAKKHRRKSGYTSAESGGESSSD 465
+ S ++ K H RKS +S+ S SSSD
Sbjct: 490 TSSSSNKEKSHSRKSSSSSSSSSSSSSSD 404
>TC10120 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
protein, partial (40%)
Length = 847
Score = 26.6 bits (57), Expect = 9.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 9 TPPVWATIVASVFLLMTLALSMYLLF 34
T + T+V SVFLL+TL + LLF
Sbjct: 529 TEEITFTLVVSVFLLLTLYCEIILLF 606
>TC14380
Length = 601
Score = 26.6 bits (57), Expect = 9.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 284 IASIVHLYVFPAKPY 298
I S++HL++FPAK Y
Sbjct: 320 IHSVIHLFIFPAKRY 276
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,836,884
Number of Sequences: 28460
Number of extensions: 125819
Number of successful extensions: 819
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of query: 482
length of database: 4,897,600
effective HSP length: 94
effective length of query: 388
effective length of database: 2,222,360
effective search space: 862275680
effective search space used: 862275680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0117b.4