BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0117b.14
(458 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13941 33 0.075
TC7884 similar to UP|RL4_PRUAR (Q9XF97) 60S ribosomal protein L4... 33 0.13
TC9957 similar to UP|Q9FXS1 (Q9FXS1) WRKY transcription factor N... 32 0.29
TC8286 homologue to GB|AAD14482.1|4249385|T2K10 T2K10.11 {Arabid... 31 0.37
TC16536 similar to UP|O22477 (O22477) Betaine aldehyde dehydroge... 30 0.64
TC12359 homologue to UP|Q08150 (Q08150) GTP-binding protein 6, p... 30 0.83
TC12015 weakly similar to UP|O65009 (O65009) BURP domain contain... 28 3.2
AI967338 28 3.2
TC19586 similar to UP|O64430 (O64430) DRH1, partial (8%) 28 3.2
AV423361 28 4.1
TC15491 28 4.1
AV417113 28 4.1
TC17762 27 5.4
TC8716 similar to UP|Q8LBD6 (Q8LBD6) Inorganic pyrophosphatase-l... 27 5.4
TC9646 weakly similar to UP|Q7NWC9 (Q7NWC9) Serine protease MucD... 27 5.4
TC10717 similar to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A lig... 27 7.0
TC16449 similar to UP|Q940R4 (Q940R4) AT4g16560/dl4305c, partial... 27 7.0
TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcri... 27 7.0
TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete 27 7.0
TC19796 27 7.0
>TC13941
Length = 550
Score = 33.5 bits (75), Expect = 0.075
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 438 CLKKLVFYPTLRTRWMFRG 456
C ++F PTLRTRWMFRG
Sbjct: 525 CWSFVLFLPTLRTRWMFRG 469
>TC7884 similar to UP|RL4_PRUAR (Q9XF97) 60S ribosomal protein L4 (L1),
partial (97%)
Length = 1476
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 297 PPAKPPDLAET-AVVGYCGLELVRAEESKGRSLIRKSVTVSRPPAKPPDFAVMAGDARFR 355
P +L+ET AVV C L L RS +S +S PP+ PP F + A
Sbjct: 299 PTVLARELSETCAVVVACSLPLGSGAAGTVRSTSTRSAMLSSPPSPPPPFLPSSSPAATA 478
Query: 356 RRWLGVVFPLSS 367
R + FPLSS
Sbjct: 479 SRPY-LSFPLSS 511
>TC9957 similar to UP|Q9FXS1 (Q9FXS1) WRKY transcription factor Nt-SubD48,
partial (16%)
Length = 653
Score = 31.6 bits (70), Expect = 0.29
Identities = 24/87 (27%), Positives = 35/87 (39%), Gaps = 4/87 (4%)
Frame = +3
Query: 275 RSGGSSHFILGDSCRSDLVANRPPAKPPDLAETAVVGYCGLELVRAEESKGRSLIRKSVT 334
+S S F+L + + +R PP T LE S+GR+L+R S++
Sbjct: 384 KSQKQSTFLLSLESSTPSLCSRSHPPPPPSTTTTTENPPKLEQQPPPPSRGRNLLRPSIS 563
Query: 335 VSRP----PAKPPDFAVMAGDARFRRR 357
P P+ PP A RRR
Sbjct: 564 HPTPLLQAPSSPPTLATPTPSTTRRRR 644
>TC8286 homologue to GB|AAD14482.1|4249385|T2K10 T2K10.11 {Arabidopsis
thaliana;}, partial (6%)
Length = 671
Score = 31.2 bits (69), Expect = 0.37
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 63 VEALLRKFEPELEPYMPEPVQDSEEEEIPGKQEVLEAERRTVVVEAKPEANSVLLAKSEI 122
+EALL K + P++P P Q + +P +Q LE V + + + V + EI
Sbjct: 107 LEALLSKLPSVIPPHLPPPTQPPQSHVLPSQQRPLEFMGMQKVAKEELDEEEVYRPELEI 286
>TC16536 similar to UP|O22477 (O22477) Betaine aldehyde dehydrogenase ,
partial (71%)
Length = 1097
Score = 30.4 bits (67), Expect = 0.64
Identities = 17/42 (40%), Positives = 22/42 (51%)
Frame = +2
Query: 270 TKPPDRSGGSSHFILGDSCRSDLVANRPPAKPPDLAETAVVG 311
T PP++S G +L R L + PP KPP A TA+ G
Sbjct: 110 TPPPNKSSGIFRRLL----RKMLTSPSPPQKPPSPATTALTG 223
>TC12359 homologue to UP|Q08150 (Q08150) GTP-binding protein 6, partial
(30%)
Length = 360
Score = 30.0 bits (66), Expect = 0.83
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 128 ENSEMEASRKDSEFAMAAEQTAEVSRCQPVTVVDYIDCTLTAKGEKIDAEGEIK-IKRL 185
E S +EAS ++ FA Q V + V + ++ AKGEKID + ++ +KR+
Sbjct: 7 ETSALEASNVENAFAEVLTQIYNVVSKKAVEGAENGTASVPAKGEKIDLKNDVSALKRV 183
>TC12015 weakly similar to UP|O65009 (O65009) BURP domain containing
protein, partial (12%)
Length = 464
Score = 28.1 bits (61), Expect = 3.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 416 YRPVHSLTLMGQAQLLEYLFFVCLKKLVFYPTLRTRWMFR 455
Y PV S M LEY +C+ ++FY + T W R
Sbjct: 193 YIPVVSYNNMLMTMFLEYFLSLCMSCVLFYV*IITMWKAR 312
>AI967338
Length = 424
Score = 28.1 bits (61), Expect = 3.2
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = +2
Query: 231 SCLCTAVTANRLPDTFFCWTEVFIQTSVLCSSMVAI 266
+CLCT + NR P T + I ++ C M AI
Sbjct: 179 ACLCTRICCNRGPSTNLSHLTLVITATICCWMMWAI 286
>TC19586 similar to UP|O64430 (O64430) DRH1, partial (8%)
Length = 492
Score = 28.1 bits (61), Expect = 3.2
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -2
Query: 393 TRPKPIMLNRRNGP---KRNFSFSIIYRPVHSLTLMGQAQLL 431
++P P + R P +RN FS+IYR + S+ L+ QLL
Sbjct: 443 SKPNPELEIERETPVSRERNTHFSLIYRIIFSIHLLWPPQLL 318
>AV423361
Length = 454
Score = 27.7 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Frame = -1
Query: 60 WEFVEALLRKFEPELEPYMPEPVQ--DSEEEEIPGKQEVLEAERRT 103
W F++ + FEP LEP+ P+ D++ P KQ+ ++ +T
Sbjct: 160 WGFLKP--KSFEP*LEPFYGAPIHEPDADSVNFPQKQQRIDHNSKT 29
>TC15491
Length = 590
Score = 27.7 bits (60), Expect = 4.1
Identities = 14/43 (32%), Positives = 20/43 (45%), Gaps = 7/43 (16%)
Frame = -2
Query: 28 EEEKFSGAEKALTGEAFMW--WFCWRRRNQKATW-----WEFV 63
EEE+ + G +W WF WRRR ++ W WE +
Sbjct: 232 EEEEERKGRHGVWGFQGVWSIWFGWRRRRRRRRWKSGGCWEVI 104
>AV417113
Length = 335
Score = 27.7 bits (60), Expect = 4.1
Identities = 7/8 (87%), Positives = 8/8 (99%)
Frame = -3
Query: 46 WWFCWRRR 53
WW+CWRRR
Sbjct: 87 WWYCWRRR 64
>TC17762
Length = 463
Score = 27.3 bits (59), Expect = 5.4
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 225 PRKPPDSCLCTAVTANRLPDTF--FCWTEVFIQTSVLCSSMVAIQLETKPPDRSGGSSHF 282
P KPP TA+ R P F T+ + ++ ++ Q E PP +GG S
Sbjct: 278 PPKPPPQNPKTAIFLPRSPANH*VFGETDTVVGLPLMSATKPPNQFEVSPPSSAGGDSRR 457
Query: 283 IL 284
++
Sbjct: 458 VI 463
>TC8716 similar to UP|Q8LBD6 (Q8LBD6) Inorganic pyrophosphatase-like
protein, partial (33%)
Length = 509
Score = 27.3 bits (59), Expect = 5.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 396 KPIMLNRRNGPKRNFSFSIIYRPVHSLTLMGQAQLLEY-LFFV 437
K + L+ + R+F+ IY P S+ GQ Q L+Y +FFV
Sbjct: 173 KNLKLSSSSRTTRSFTCKAIYNPQVSIKEEGQPQTLDYRVFFV 301
>TC9646 weakly similar to UP|Q7NWC9 (Q7NWC9) Serine protease MucD ,
partial (5%)
Length = 532
Score = 27.3 bits (59), Expect = 5.4
Identities = 16/38 (42%), Positives = 19/38 (49%), Gaps = 12/38 (31%)
Frame = -2
Query: 29 EEKFSGAE------KALTGEAFMW------WFCWRRRN 54
E+ FSG E K L GE+F W W C +RRN
Sbjct: 165 EKMFSGNEEE*VF*KVL*GESFEWFFWW*RWLCMKRRN 52
>TC10717 similar to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A ligase ,
partial (32%)
Length = 691
Score = 26.9 bits (58), Expect = 7.0
Identities = 7/16 (43%), Positives = 10/16 (61%)
Frame = -3
Query: 45 MWWFCWRRRNQKATWW 60
+WW+ WRR + WW
Sbjct: 110 LWWWWWRRHAGE*RWW 63
>TC16449 similar to UP|Q940R4 (Q940R4) AT4g16560/dl4305c, partial (18%)
Length = 613
Score = 26.9 bits (58), Expect = 7.0
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 13/46 (28%)
Frame = -1
Query: 28 EEEKFSGAEKALTGEA--------FMWWFCWRRRNQKA-----TWW 60
E KF +L GE+ + WW+CW+R ++ WW
Sbjct: 319 EPPKFRDRV*SLPGESGRESWCCWWRWWWCWKRAAERVEVVLRRWW 182
>TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcription
factor 17 (WRKY DNA-binding protein 17), partial (53%)
Length = 1284
Score = 26.9 bits (58), Expect = 7.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 213 ISDLGFDWERRPPRKPPDSCLCTAVTANRLPDTFFCW 249
+SD RPP PP S A ++ PD+ F W
Sbjct: 774 VSDRTSSMSTRPPEYPPPSNSPPAPLSSSSPDSSFSW 664
>TC8273 UP|BAD11134 (BAD11134) Glutamate-rich protein, complete
Length = 923
Score = 26.9 bits (58), Expect = 7.0
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Frame = +1
Query: 85 SEEEEIPGKQEVLEAERRTVVVEAKPEANSVLLAKSEIKPY----------SPENSEMEA 134
+E P + E E + V E KPEA + E+KP + E + EA
Sbjct: 262 TEAPAAPETEAPAEVETKEVTEETKPEAEKT--EEPEVKPEEVKEEPIVEETKETAATEA 435
Query: 135 S----RKDSEFAMAAEQTAEVS 152
+ K SE + AAE T E +
Sbjct: 436 APVEEEKSSEESKAAETTVEAT 501
>TC19796
Length = 522
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/54 (29%), Positives = 25/54 (45%)
Frame = -1
Query: 71 EPELEPYMPEPVQDSEEEEIPGKQEVLEAERRTVVVEAKPEANSVLLAKSEIKP 124
EPE P P P +++E+ +I K +R + KP+ N + E KP
Sbjct: 192 EPESLPKTPAPRKENEKRDIGTKPRNKRPKR-----QRKPQKNHTAKQEGETKP 46
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,908,956
Number of Sequences: 28460
Number of extensions: 140909
Number of successful extensions: 1003
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of query: 458
length of database: 4,897,600
effective HSP length: 93
effective length of query: 365
effective length of database: 2,250,820
effective search space: 821549300
effective search space used: 821549300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0117b.14