TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0114.8
         (743 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP085348                                                              242  2e-64
AV765888                                                               46  2e-05
TC9166 similar to UP|Q9XFL4 (Q9XFL4) Peroxidase 3, partial (49%)       31  0.63
AV418159                                                               29  2.4
CN825699                                                               29  3.1
TC10235                                                                28  5.3
TC15256 homologue to UP|AX28_SOYBN (P13089) Auxin-induced protei...    27  9.1

>BP085348 
          Length = 486

 Score =  242 bits (617), Expect = 2e-64
 Identities = 121/124 (97%), Positives = 124/124 (99%)
 Frame = -2

Query: 620 MIGLVTSNARHSGGAVIPHLNFSIPSAALAPIFKFAEDMKDLSLLQILDEPNEYLSSIWA 679
           MIGLVTSNARHSGGAVIPHLNFSIPSAALAPIFKFAEDMKDLSLLQILDEPNEYLSSIWA
Sbjct: 485 MIGLVTSNARHSGGAVIPHLNFSIPSAALAPIFKFAEDMKDLSLLQILDEPNEYLSSIWA 306

Query: 680 LMRPSYPKLHSVPGSPQSLVDKKSKEEKGSRFAKFIAERKDIFNDSSHIGKSGVVPKEVI 739
           LMRPSYPKLHSVPGSPQSLVD+KS+EEKGSRFAKFIAERKDIF+DSSHIGKSGVVPKEVI
Sbjct: 305 LMRPSYPKLHSVPGSPQSLVDQKSQEEKGSRFAKFIAERKDIFHDSSHIGKSGVVPKEVI 126

Query: 740 PSKL 743
           PSKL
Sbjct: 125 PSKL 114


>AV765888 
          Length = 581

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
 Frame = -3

Query: 515 WDVALLQIESIPDNLVPMVMNFSRP-STGSKAYVIGHGLFGPKCGFFPSVCSGVIAKVVE 573
           +D+A+L+++     + P+ +  S   + G   + IG+       G+  ++ +GV++ +  
Sbjct: 561 YDLAVLKVDVDGYEIKPVALGQSNNLNVGQSCFAIGNPY-----GYENTLTTGVVSGLGR 397

Query: 574 AKTTQSYQSIQAEHMHTNGNFPAMLETTAAVHPGASGGAVINSDGHMIGLVTSNARHSGG 633
              + +            G     ++T AA++ G SGG +I+S GH+IG+ TS     G 
Sbjct: 396 EIPSPN-----------GGAIRGAIQTDAAINAGNSGGPLIDSRGHVIGVNTSTFTRKGT 250

Query: 634 AVIPHLNFSIP 644
            V   +NF+IP
Sbjct: 249 GVSSGVNFAIP 217


>TC9166 similar to UP|Q9XFL4 (Q9XFL4) Peroxidase 3, partial (49%)
          Length = 559

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 27/107 (25%), Positives = 49/107 (45%)
 Frame = +3

Query: 196 SSSNDSKPSRDFLQTQGRLAVGGSGSASLLCKSLTRMAILSVSLSLKDSLDSSVCSMIKR 255
           SSS+ S  +  F+ +   L + GS +++ L ++       SV  ++K  + S+V    + 
Sbjct: 24  SSSSSSSAANIFVLSLFMLFLIGSSNSAQLSENFYVKKCPSVFNAVKSVVHSAVAKEARM 203

Query: 256 GDFLLAIGSPFGVLSPTHFFNSYPPNSSDGSLLMADIRTLPGMEGSP 302
           G  LL +           FF+    N  DGS+L+ D  +  G + +P
Sbjct: 204 GGSLLRL-----------FFHDCFVNGCDGSVLLDDTSSFKGEKTAP 311


>AV418159 
          Length = 282

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 4/44 (9%)
 Frame = +3

Query: 598 LETTAAVHPGASGGAVINSDGHMIGLV----TSNARHSGGAVIP 637
           ++  AA++PG SGG   N  G  IG+      S    + G VIP
Sbjct: 96  IQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEEAENIGYVIP 227


>CN825699 
          Length = 719

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 25/86 (29%), Positives = 34/86 (39%)
 Frame = -2

Query: 199 NDSKPSRDFLQTQGRLAVGGSGSASLLCKSLTRMAILSVSLSLKDSLDSSVCSMIKRGDF 258
           N S   R    T  RL      + +L   SL    +LSVS+       SS C  I+    
Sbjct: 577 NSSSAFRICFNTNTRLCFFPFKTCNLSSTSLFLFCLLSVSIPPLSVTGSSACFSIEVAAP 398

Query: 259 LLAIGSPFGVLSPTHFFNSYPPNSSD 284
           L A   P  +   + F++  P  SSD
Sbjct: 397 LDAFSKPLFLELMSGFWSELPATSSD 320


>TC10235 
          Length = 1116

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/39 (35%), Positives = 21/39 (52%)
 Frame = +1

Query: 514 PWDVALLQIESIPDNLVPMVMNFSRPSTGSKAYVIGHGL 552
           PWD+ LL +ESI   L+     F +P T  + + + H L
Sbjct: 166 PWDLLLLNLESIQQGLL-----FHKPKTDHQIHHLKHTL 267


>TC15256 homologue to UP|AX28_SOYBN (P13089) Auxin-induced protein AUX28,
           partial (51%)
          Length = 664

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 320 QKTSGVETQLVIPWEAIVTASSGLLR-KWG 348
           + TSG+ T++  PW  +V++S+   R +WG
Sbjct: 73  RNTSGIYTKVYSPWSLVVSSSTTTRRSRWG 162


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,290,588
Number of Sequences: 28460
Number of extensions: 194551
Number of successful extensions: 943
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of query: 743
length of database: 4,897,600
effective HSP length: 97
effective length of query: 646
effective length of database: 2,136,980
effective search space: 1380489080
effective search space used: 1380489080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)