BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0114.7
(1898 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780445 142 7e-52
TC18710 166 4e-41
AV768875 112 5e-25
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 108 8e-24
BP076564 99 5e-21
BP068806 96 5e-20
AV767121 94 2e-19
AV780705 88 1e-17
TC19596 88 1e-17
BP060613 85 1e-16
AV780221 75 7e-14
CN825682 72 1e-13
BP085058 74 3e-13
BE122611 44 2e-10
AV411435 59 5e-09
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 58 2e-08
BI418523 55 8e-08
AV407204 54 2e-07
BP040790 47 6e-07
BP080173 52 7e-07
>AV780445
Length = 504
Score = 142 bits (359), Expect(2) = 7e-52
Identities = 62/109 (56%), Positives = 75/109 (67%)
Frame = +1
Query: 1704 SSWIRSQARSNNGVKFIVGLWGVWKWRNNMIFEDSPWSLEEAWRRVCHEHDEIVAVLGEE 1763
SS + Q R N VK + G+W VWKWRNNM+FEDSPWS++EAWR++ HEHDE + +
Sbjct: 178 SSQLDQQPRIRNSVKCLAGVW*VWKWRNNMVFEDSPWSVDEAWRKLGHEHDEFITFSDGD 357
Query: 1764 AGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDDSSGVGGLARDPSGNWL 1812
AG WL SRWQPP G++KLNVDGS R+ D G GGL RD G WL
Sbjct: 358 AGDPGSWLSSRWQPPRQGTVKLNVDGSGREQDRCMGAGGLIRDDQGKWL 504
Score = 80.5 bits (197), Expect(2) = 7e-52
Identities = 37/64 (57%), Positives = 42/64 (64%)
Frame = +2
Query: 1646 LQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAWPNFTAGDHSS 1705
+QV H K + S RC APEEDI HCLR CPHSQE+WL+ GA+AW N GDH S
Sbjct: 8 IQVVTHLSIFKFLSFFSFFRCPAPEEDI*HCLRDCPHSQEIWLRLGAWAWTNLGVGDHRS 187
Query: 1706 WIRS 1709
WI S
Sbjct: 188 WISS 199
>TC18710
Length = 843
Score = 166 bits (419), Expect = 4e-41
Identities = 101/273 (36%), Positives = 146/273 (52%), Gaps = 2/273 (0%)
Frame = +2
Query: 982 FFVNLFTGITPLASPRVTHDLFP-SLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADG 1040
FF L+T P +S P SL + KSL L+ ++K ++R + + G DG
Sbjct: 23 FFPELYTSTPPNSSESA*MLFLP*SLKI*IKSLNLR*LQK-KLRLLFFLLETSQPRGMDG 199
Query: 1041 FQPFFYKKYWNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLC 1100
FY+K + V DS+ + + ++ + + LV LIPKV P ++ RPIS C
Sbjct: 200 MNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRPISGC 379
Query: 1101 NVAFKVITKVLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKSTA-KRGM 1159
+KVI+K+ V RL+ + LI PMQS F+ GR DN + QE H +++ A R
Sbjct: 380 TFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGALGRNH 559
Query: 1160 VAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPG 1219
K+D+ KAYD V W FL+ +L +GF + +IM V+ + NG P P
Sbjct: 560 SIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQ 739
Query: 1220 RGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGD 1252
RGLRQGDP SPYLF+ ME LS+LIQ+ + G+
Sbjct: 740 RGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMGN 838
>AV768875
Length = 232
Score = 112 bits (280), Expect = 5e-25
Identities = 48/76 (63%), Positives = 62/76 (81%)
Frame = +1
Query: 701 REILWRHMTLLRRRFLLPWLLLGDFNEILFPSEVRGGDFLPNRAAMFASVLDTCQLVDLG 760
R+ILW+H++ +R +PWLL+GD NEILFPS+VRGG+F PNRA FA+VLD C L+DLG
Sbjct: 4 RDILWQHLSTIRASISIPWLLIGDMNEILFPSQVRGGEFHPNRAQRFATVLDDCNLIDLG 183
Query: 761 AVGRRFTWFQKANDRL 776
VG +FTWF+K N+RL
Sbjct: 184 MVGGKFTWFRKRNNRL 231
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial (14%)
Length = 592
Score = 108 bits (270), Expect = 8e-24
Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 1/190 (0%)
Frame = -3
Query: 938 GDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGITPLASPR 997
GD NT +FH T+ RR NR+ ++K G W ++ + +F ++++ +PL R
Sbjct: 569 GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSS-SPLQYLR 393
Query: 998 VTHDLFPSLSVEAKS-LLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDS 1056
P L + + L V DE++ A+ SM APG DG FY++ V +
Sbjct: 392 ECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKND 213
Query: 1057 LWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLR 1116
+ + + + F G++ L + LV LIPK+ ++ RPIS C+ +KVI+K++V RL+
Sbjct: 212 VNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLK 33
Query: 1117 PFLRKLIGPM 1126
P + LI PM
Sbjct: 32 PDMVNLISPM 3
>BP076564
Length = 371
Score = 99.4 bits (246), Expect = 5e-21
Identities = 47/105 (44%), Positives = 63/105 (59%)
Frame = +2
Query: 1628 LKVPEKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELW 1687
LKV EK + V L L +L +N R C MAA+ C RCSA +DILHCL+ CPHS+E+W
Sbjct: 56 LKVVEKCKFMVGLGLHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVW 235
Query: 1688 LKFGAFAWPNFTAGDHSSWIRSQARSNNGVKFIVGLWGVWKWRNN 1732
+ G ++ F + D SW+ S + N K I LW +W+ RNN
Sbjct: 236 NRLGCSSFGGFLSSDGWSWLLSIMKQPNVEKLIYILWWIWR*RNN 370
>BP068806
Length = 418
Score = 95.9 bits (237), Expect = 5e-20
Identities = 39/84 (46%), Positives = 57/84 (67%)
Frame = +3
Query: 1629 KVPEKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWL 1688
+VPEKIR +VW +Q ++QVN RFRCK+A SP+ RC EDI HCLR C ++++W+
Sbjct: 147 EVPEKIRVWVWFIMQGAIQVNSFRFRCKLATSPAGPRCQHQFEDIWHCLRDCRIARDVWV 326
Query: 1689 KFGAFAWPNFTAGDHSSWIRSQAR 1712
+ A WP F + +W++SQA+
Sbjct: 327 RLNALGWPGFFVSNAQAWVKSQAQ 398
>AV767121
Length = 525
Score = 94.4 bits (233), Expect = 2e-19
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Frame = +2
Query: 1365 LGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHG 1424
L W+ +S GR+ L +SV+ A+P + + F +P GV +L+R+F+W G +
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 1425 WHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSHK---YLSN 1481
V W + +PK+ GGLG++D N AL+GK W + +P+ LW RV+ + Y
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDHYSCG 361
Query: 1482 SSVLQ--VQAKPQDSQVWKGLLKARDRLHTGFVFRLGNG-ETSLWHDDWSGMG 1531
SS + P+D+ W +G +G G +T W +DW G G
Sbjct: 362 SSWWNDILSLCPEDADGW---------FSSGLKKLVGEGDQTKFWSEDWLGSG 493
>AV780705
Length = 524
Score = 87.8 bits (216), Expect = 1e-17
Identities = 46/150 (30%), Positives = 75/150 (49%), Gaps = 1/150 (0%)
Frame = -2
Query: 1330 IPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAM 1389
+P D G YLG P GR + ++ E ++ KL W+ +L+ AG+ L K++I A+
Sbjct: 511 MPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAI 332
Query: 1390 PTYTMQVFNMPRGVTCKINQLIRSFIWSGKG-GGHGWHLVNWEKITQPKDRGGLGVRDTE 1448
P+Y M + + P+ + L+ F W +G G + K K++GG+G RD
Sbjct: 331 PSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDLR 152
Query: 1449 LANTALMGKAIWCLMHKPNKLWVRVLSHKY 1478
N A + + W ++ P LWVRV+ Y
Sbjct: 151 TQNLAFLARQAWRVLTNPEALWVRVMKSLY 62
>TC19596
Length = 499
Score = 87.8 bits (216), Expect = 1e-17
Identities = 48/118 (40%), Positives = 71/118 (59%), Gaps = 3/118 (2%)
Frame = +1
Query: 1784 KLNVDGSYRDVDDSSGVGGLARDPSGNWLFGFLAHRRGGNAFLAEAQALLLGLELVWARG 1843
+++ DG+++ DD G+GG+ RD G W+ GF A GG+A AE AL GL L+W
Sbjct: 4 RMDSDGAFKHDDDRMGMGGIVRDAHGAWISGFYAGSLGGDALRAEIAALKHGLTLLWNAH 183
Query: 1844 YRDIVVEVDCADLLQSLDDEDRRRFLPI---LGDIRNMKDRGWRISLERVRRDCNAPA 1898
R EVDC D++++L++ DR +F + L DIR + DR W ++L V R+ NA A
Sbjct: 184 VRRATCEVDCLDIVEALEN-DRYQFHALASELLDIRLLLDRDWTVTLAYVPREANAAA 354
>BP060613
Length = 378
Score = 84.7 bits (208), Expect = 1e-16
Identities = 40/106 (37%), Positives = 58/106 (53%)
Frame = +1
Query: 1415 IWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVL 1474
+W G G H W+ +T+ KD GGLG +D E+ N AL+ K W ++H P+ LWV++L
Sbjct: 43 VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 1475 SHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET 1520
Y + LQ + S VW LL R+ L ++LG+GET
Sbjct: 223 KALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGET 360
>AV780221
Length = 461
Score = 75.5 bits (184), Expect = 7e-14
Identities = 49/161 (30%), Positives = 76/161 (46%), Gaps = 9/161 (5%)
Frame = +3
Query: 1379 VCLAKSVIAAMPTYTMQVFNMPRG-VTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQPK 1437
+CL +SV+ A+P + + F +P G +N F GG V W + +PK
Sbjct: 3 LCLIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPK 182
Query: 1438 DRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQDSQVW 1497
D GGLGV++ L N AL+GK W ++ + + LW +VL KY + A PQ + W
Sbjct: 183 DEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKYKN--------AIPQSASSW 338
Query: 1498 KGLLKAR-------DRLHTGFVFRLGNG-ETSLWHDDWSGM 1530
L + + G R+G G E W+++W G+
Sbjct: 339 WNDLHSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWLGL 461
>CN825682
Length = 626
Score = 72.0 bits (175), Expect(2) = 1e-13
Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = -3
Query: 719 WLLLGDFNEILFPSEVRGG-DFLPNRAAMFASVLDTCQLVDLGAVGRRFTWFQKANDRLI 777
W GDFNEIL E G D P R +F LD L+DL G RFTW + L+
Sbjct: 300 WTCYGDFNEILHHQEKEGARDQDPTRIQVFRDFLDGANLMDLELKGCRFTWLSNLRNGLV 121
Query: 778 LSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCP 812
+RLDR L + W++ +P+A L + SDH P
Sbjct: 120 TKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16
Score = 23.1 bits (48), Expect(2) = 1e-13
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = -1
Query: 680 VWKDNLSWVCSAVYASPIPANREILWRHMTLL 711
VW + + + +YA+PI R LW +T L
Sbjct: 416 VWPNKEIVLGTFIYANPIFRQRRNLWPQITSL 321
>BP085058
Length = 452
Score = 73.6 bits (179), Expect = 3e-13
Identities = 39/123 (31%), Positives = 68/123 (54%)
Frame = +2
Query: 1320 VKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRV 1379
++D + + IPF ++GKY+ FP+ G + + F F L+ + +L +A +L+ R+
Sbjct: 80 LRDRMVSITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARL 259
Query: 1380 CLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDR 1439
LAK V++A+ Y MQ+ +P+ + +I ++R F+W +G LV WE I K
Sbjct: 260 TLAKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVWENV---NGIPLVAWETIQSRKSM 430
Query: 1440 GGL 1442
GL
Sbjct: 431 VGL 439
>BE122611
Length = 357
Score = 43.9 bits (102), Expect(2) = 2e-10
Identities = 22/64 (34%), Positives = 34/64 (52%)
Frame = -3
Query: 1589 VWTWETNSMGIYTVRGAYRWLQDQQSHLPVVDDWNWIWKLKVPEKIRTFVWLTLQNSLQV 1648
+WT E+N G Y+ + Y L + + W+ +WK PEK+R F+WL +N+L
Sbjct: 322 LWTEESN--GCYSAKSTYNLLIEDGGNESRF--WSLVWKANAPEKVRFFLWLVGRNALPS 155
Query: 1649 NLHR 1652
N R
Sbjct: 154 NARR 143
Score = 40.4 bits (93), Expect(2) = 2e-10
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 1657 MAASPSCSRCSAPEEDILHCLRTCPHSQELWLKF 1690
+A+S +C RC AP ED H R CP S +W +F
Sbjct: 131 LASSAACIRCGAPSEDANHVFRWCPGSAWMWTQF 30
>AV411435
Length = 426
Score = 59.3 bits (142), Expect = 5e-09
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Frame = +3
Query: 1580 PTIVPNRQDVWTWETNSMGIYTVRGAYRWLQDQQSHL---------PVVDDWNWIWKLKV 1630
P + +D W G Y+V+ YR ++ Q +L P W+ IW +V
Sbjct: 15 PFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQV 194
Query: 1631 PEKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELW 1687
P+K+R+F+W N++ V + R M C C+ EDI H L C ++ +W
Sbjct: 195 PKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVW 365
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/72 (36%), Positives = 44/72 (61%)
Frame = -3
Query: 916 RNILRQEELL*YQKARENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVL 975
+++ RQEEL Q++R + GD+NT +FH T+ RR +NR+ R+K GTW + +
Sbjct: 288 KDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRERNRIERIKDMQGTWVRSQLAI 109
Query: 976 KRVVHGFFVNLF 987
R V F+ +++
Sbjct: 108 NRDVPDFYPDIY 73
>BI418523
Length = 496
Score = 55.5 bits (132), Expect = 8e-08
Identities = 36/118 (30%), Positives = 59/118 (49%), Gaps = 5/118 (4%)
Frame = +1
Query: 1740 WSLEEAWRRVCHEHDEIVAVLGE-----EAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDV 1794
W ++ WR ++ +I+ LG+ + CW W PP AG IK NVDG+ +
Sbjct: 76 WWIKSMWRECHYDIYQIMQNLGDIRITPKLKPPRCW---SWSPPSAGFIKCNVDGASQGN 246
Query: 1795 DDSSGVGGLARDPSGNWLFGFLAHRRGGNAFLAEAQALLLGLELVWARGYRDIVVEVD 1852
SGVGG+ RD + L F + G A+ A+ +++L L + ++I++E D
Sbjct: 247 PGPSGVGGVFRDANRKILGYFSLNSGNGWAYEAKVRSILNALVFIQKFLLKNILIESD 420
>AV407204
Length = 432
Score = 53.9 bits (128), Expect = 2e-07
Identities = 33/93 (35%), Positives = 46/93 (48%), Gaps = 5/93 (5%)
Frame = -2
Query: 1811 WLFGFLAH--RRGGNAFLAEAQALLLGLELVWARGYRDIVVEVDCADLLQSLDDEDRRRF 1868
W+ GF++ +FLAEA AL GL L W G R +V DC +L+ ++ D R F
Sbjct: 428 WVNGFISQYLEAASCSFLAEALALRDGLRLAWDNGTRKLVCNSDCKELIDAIADPSRASF 249
Query: 1869 LP---ILGDIRNMKDRGWRISLERVRRDCNAPA 1898
+L +I + R WR+ L RD N A
Sbjct: 248 HAHGWVLREIHALMTRNWRVELFWCCRDVNMVA 150
>BP040790
Length = 344
Score = 46.6 bits (109), Expect(2) = 6e-07
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +2
Query: 1831 ALLLGLELVWARGYRDIVVEVDCADLLQSLDDEDRRRFLPILGDIRNMKDR 1881
AL GL VW G + +VDC ++LQ+L D D RF P+LG++R DR
Sbjct: 176 ALRNGLMSVWNWGLIYVACKVDCVEVLQALYDPDNWRFTPVLGELRGWLDR 328
Score = 25.4 bits (54), Expect(2) = 6e-07
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 1809 GNWLFGFLAHRRGGNAFL 1826
G WL GF GGN F+
Sbjct: 108 GLWLLGFALREEGGNTFM 161
>BP080173
Length = 382
Score = 52.4 bits (124), Expect = 7e-07
Identities = 33/109 (30%), Positives = 59/109 (53%), Gaps = 4/109 (3%)
Frame = -2
Query: 1774 RWQPPMAGSIKLNVDGSYRDVDDSSGVGGLARDPSGNWLFGFLAHRRGGNAFL--AEAQA 1831
RW PM G IK+N+DGS+ + + GG+ D G ++ G A R G F+ AE
Sbjct: 348 RWPVPMEGWIKINIDGSFAPSSNCAACGGVMWDHEGTFITG--ASVRLGCYFINHAELWG 175
Query: 1832 LLLGLELVWARGYRDIVVEVDCADLLQSLDD--EDRRRFLPILGDIRNM 1878
+ G ++ ARG++ I+VE D + ++ ++ + P++ DI+++
Sbjct: 174 IFHGAKIAQARGFKKILVESDSSFVVSLVNQGCSPSKPATPLVKDIKSL 28
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.332 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,266,047
Number of Sequences: 28460
Number of extensions: 651170
Number of successful extensions: 4043
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 3938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4035
length of query: 1898
length of database: 4,897,600
effective HSP length: 104
effective length of query: 1794
effective length of database: 1,937,760
effective search space: 3476341440
effective search space used: 3476341440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0114.7