BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0113.5
(992 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CN825682 67 1e-12
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 70 2e-12
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 69 3e-12
AV768875 55 7e-08
BP065875 40 0.002
BP065966 38 0.007
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 32 0.65
TC19311 31 1.1
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 30 1.4
TC11018 homologue to UP|Q8VWW1 (Q8VWW1) LIM domain protein, part... 29 4.2
AV409862 29 4.2
TC9115 similar to PIR|T00425|T00425 photolyase/blue-light recept... 28 5.5
BP065227 28 5.5
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 28 7.1
TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase... 28 7.1
AW720160 28 7.1
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog... 28 9.3
TC18503 similar to UP|Q9DTD4 (Q9DTD4) ORF1, partial (3%) 28 9.3
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 28 9.3
BP054763 28 9.3
>CN825682
Length = 626
Score = 66.6 bits (161), Expect(2) = 1e-12
Identities = 37/95 (38%), Positives = 45/95 (46%), Gaps = 5/95 (5%)
Frame = -3
Query: 641 WVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTW-----KGRG 695
W GDFN L +K G + + FRD LD +L DL KG FTW G
Sbjct: 300 WTCYGDFNEILHHQEKEGARDQDPTRIQVFRDFLDGANLMDLELKGCRFTWLSNLRNGLV 121
Query: 696 VKERIDWALGNARWISSFPEATVLHLPKLKYDHKP 730
KER+D L N W +P AT + LP + DH P
Sbjct: 120 TKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16
Score = 23.9 bits (50), Expect(2) = 1e-12
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Frame = -1
Query: 597 HLRIHPKNNV-PN---FLVTFVYGSPNASIRNFLWQELQNI 633
H +I P+ +V PN L TF+Y +P R LW ++ ++
Sbjct: 443 HDKIQPQPHVWPNKEIVLGTFIYANPIFRQRRNLWPQITSL 321
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 70.1 bits (170), Expect = 2e-12
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = -3
Query: 849 RVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSP 908
R+ L GD NT FFH +T+ R N+I + + G + Q ++ AV F ++Y+S
Sbjct: 590 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSS- 414
Query: 909 GPGEPYHVRNAFPSLPRETLDEIMGPLEAA----EIRVAVFSMGAMKAPGPDDLNPLFFQ 964
++R +P+ D + L A EI+ AVFSMG +KAPG D +N LF+Q
Sbjct: 413 --SPLQYLRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQ 240
Query: 965 SQWQVI 970
+++
Sbjct: 239 QNREIV 222
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 69.3 bits (168), Expect = 3e-12
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Frame = -3
Query: 763 VKSSWD------SHHDSWIPASEAFCEEAAS-WNRDVFGEIGRTKRRLMRRLEGINNHLR 815
+K +WD S H S + + A + W+ F + L +LE + N+
Sbjct: 513 IKKAWDNTSETASSHCSNLSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEHLQNYSN 334
Query: 816 MSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNK 875
S + E Q+++ + + +EEL W Q+SR+ WL GD+NT FFH +T+ R+RN+
Sbjct: 333 -SGEDWQEIKQRKM--RLKDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRERNR 163
Query: 876 IEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGEPYHVRNAFPSLPRETLD 929
IE + + G + Q + + ++Y S NA P + E+L+
Sbjct: 162 IERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNITECLNAVPRVIYESLN 1
>AV768875
Length = 232
Score = 54.7 bits (130), Expect = 7e-08
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 623 RNFLWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGG-PPNLLSMAKFRDCLDACSLSD 681
R+ LWQ L I + ++ PW+ +GD N L S GG PN +F LD C+L D
Sbjct: 4 RDILWQHLSTIRASISIPWLLIGDMNEILFPSQVRGGEFHPN--RAQRFATVLDDCNLID 177
Query: 682 LGFKGPPFTW 691
LG G FTW
Sbjct: 178 LGMVGGKFTW 207
>BP065875
Length = 495
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 527 LKDIVMRHRVSCLALYEPRV---QTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVLW 579
+KD + RV+C Y +V + I+ +GF+ VVEAEGF GGIW+ W
Sbjct: 359 IKDQLWSSRVTCK--YSSKVVLISCSRASSIIWRIGFDHSVVVEAEGFVGGIWIHW 198
>BP065966
Length = 443
Score = 38.1 bits (87), Expect = 0.007
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +1
Query: 501 STLFMMLYNLFSWNIICAGAQGVPLLLKDIVMRHRVSCLALYEPRVQTNNL 551
S F+ ++ +WN+ A G + +D++ RH +SC+ L+E R++ +++
Sbjct: 286 SLFFVFMFKAMTWNVR*PVALGFASIKRDLISRHNLSCVVLFETRMRGSDV 438
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 31.6 bits (70), Expect = 0.65
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 6/138 (4%)
Frame = +1
Query: 339 HMVDSAGSGISPTKGKVVNTNDEPNHEGISSVPNDETMISGPTKIT-SAPTGP-----QP 392
H S+ S SP + +P H +S + T PTK+T + PT P P
Sbjct: 40 HTSSSSSSSYSPPPPP----SQQPTHSPSTSPTSTTTPPPSPTKVTENPPTAPSTSTKSP 207
Query: 393 HDGGTGTKVNPNSQGAIPQQSRADVAHPSHFKSGQHDKLGPTSGSSSLKKTKMKARGHQR 452
+ PN + QQ + P S P + +S + + A
Sbjct: 208 TSSASEEPSPPNPSTSTTQQPKHSPTSPPASPSPSPPSTKPPTAMASPSTSPLSA----- 372
Query: 453 VEGSSEPRRSPNASSNAP 470
+ P +P+ASS P
Sbjct: 373 TKSHPTPPAAPSASSTPP 426
>TC19311
Length = 550
Score = 30.8 bits (68), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -2
Query: 615 YGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQ 652
YG + LW +LQ + + PW+ +FNT LQ
Sbjct: 351 YGITYPQLHQLLWHDLQWMHEYIIWPWIPGCNFNTILQ 238
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 30.4 bits (67), Expect = 1.4
Identities = 30/111 (27%), Positives = 39/111 (35%)
Frame = +3
Query: 329 TPTNQESQPQHMVDSAGSGISPTKGKVVNTNDEPNHEGISSVPNDETMISGPTKITSAPT 388
TP + + P SA SP P E SS P + GPT + +P
Sbjct: 696 TPPSASTSPSPSPVSAPPAASPA----------PGAESPSSSPTSNSPAGGPTATSPSPA 845
Query: 389 GPQPHDGGTGTKVNPNSQGAIPQQSRADVAHPSHFKSGQHDKLGPTSGSSS 439
G P G +P + P S DV+ SG L + SSS
Sbjct: 846 GDSPAGGPPAP--SPTTGDTPPSASGPDVS-----PSGTPSSLPADTPSSS 977
>TC11018 homologue to UP|Q8VWW1 (Q8VWW1) LIM domain protein, partial (31%)
Length = 479
Score = 28.9 bits (63), Expect = 4.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 690 TWKGRGVKERIDWALGNARWIS 711
TWK R K R W+L N WI+
Sbjct: 406 TWKVRSCKSRSHWSLLNVHWIN 341
>AV409862
Length = 420
Score = 28.9 bits (63), Expect = 4.2
Identities = 22/91 (24%), Positives = 35/91 (38%)
Frame = +3
Query: 380 PTKITSAPTGPQPHDGGTGTKVNPNSQGAIPQQSRADVAHPSHFKSGQHDKLGPTSGSSS 439
P T++P+ P+P T + + S S+ + PS + P S++
Sbjct: 132 PPTTTNSPSKPEPPATSTPSATSSTSA------SKTAASTPSTPSASSPPPTSPPPSSTT 293
Query: 440 LKKTKMKARGHQRVEGSSEPRRSPNASSNAP 470
L + + R S P ASSNAP
Sbjct: 294 LFAPSLASTLASRARARSNPSSRAYASSNAP 386
>TC9115 similar to PIR|T00425|T00425 photolyase/blue-light receptor (PHR2)
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (55%)
Length = 1018
Score = 28.5 bits (62), Expect = 5.5
Identities = 36/158 (22%), Positives = 58/158 (35%)
Frame = +1
Query: 326 NQNTPTNQESQPQHMVDSAGSGISPTKGKVVNTNDEPNHEGISSVPNDETMISGPTKITS 385
+ N PT +SQP+ P + N P S P + P+ + +
Sbjct: 229 HNNNPTRSKSQPKPPPSPTSHSPPPPHPRRPNPPSNPPSPPTPSAPLTP*APTAPSTLPT 408
Query: 386 APTGPQPHDGGTGTKVNPNSQGAIPQQSRADVAHPSHFKSGQHDKLGPTSGSSSLKKTKM 445
P P G+ T S A + S + S F S +S+L+ T
Sbjct: 409 PPHSAAPPSSGSAT----TSASATTRLSTPPTTNRSQFY---------LSTASTLRIT-- 543
Query: 446 KARGHQRVEGSSEPRRSPNASSNAPGDMGGRTFRERDR 483
G+ + GS++P + SS+ + GR FR+ R
Sbjct: 544 ---GNPHL-GSTKPVPTVLLSSSNRSRIFGRIFRQEGR 645
>BP065227
Length = 405
Score = 28.5 bits (62), Expect = 5.5
Identities = 15/43 (34%), Positives = 17/43 (38%), Gaps = 8/43 (18%)
Frame = +1
Query: 753 WLTHEDFPRLVKSSWDSHHDSWIPASEAF--------CEEAAS 787
W H FPR S HH SW+ A CE +AS
Sbjct: 262 WHNHNSFPREWTGSIPKHHKSWVDKCRAS*AINILXGCETSAS 390
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 358 TNDEPNHEGISSVPNDETMISGPTKITSAPTGPQPHDGGTGTKVNPNSQGAIPQQSRADV 417
T + P+ S P ++ + + T +PT P P TG + + A + A
Sbjct: 131 TANTPSGPASSPTPATQSSPAAASSSTPSPTSPSPSQTLTGPAASGPAPAAPTPPATASP 310
Query: 418 AHPS 421
AHP+
Sbjct: 311 AHPA 322
>TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase-like
protein, partial (24%)
Length = 602
Score = 28.1 bits (61), Expect = 7.1
Identities = 15/54 (27%), Positives = 23/54 (41%)
Frame = +1
Query: 357 NTNDEPNHEGISSVPNDETMISGPTKITSAPTGPQPHDGGTGTKVNPNSQGAIP 410
N++ P +SS + + + P PT P P TG +PN A+P
Sbjct: 283 NSHSSPPFSSLSSSSSSSSPLPHPLP-PPPPTKPAPGAAPTGKNASPNPPAAVP 441
>AW720160
Length = 500
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 697 KERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRP 746
+E +W W+SSFPEA + +P+++ L + PE + S RP
Sbjct: 67 QEEEEWETMARAWLSSFPEAKEVSMPEVEAWIDSNLSSI-PEGLRSMPRP 213
>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (43%)
Length = 890
Score = 27.7 bits (60), Expect = 9.3
Identities = 34/139 (24%), Positives = 52/139 (36%), Gaps = 6/139 (4%)
Frame = +2
Query: 369 SVPNDETMISGPTKITSAPTGPQ----PHDGGTGTKVNPNSQGAIPQQSRADVAHPSHFK 424
S P T PT + GPQ P T + N+ + P ++ + S
Sbjct: 263 SSPPSTTTSPSPTSPPRSTNGPQSPSAPSTTPPWTTSSQNTHQSPPSRTSSPSTSSSTTS 442
Query: 425 SGQHDKLGPTSGSSSLKKTKMKARGHQRVEGSSEPRRSPNASSNAPGDMGGRTFRERDRS 484
+ + PT+ S + TK A P R+P SS +P G++ +
Sbjct: 443 APRSSTRSPTAPPSPPQCTKPPA-----------PPRAPPDSSTSPTSAAGKSDSAPRTT 589
Query: 485 LSPRKHRSS--*RAFPSIS 501
+P RSS *R P+ S
Sbjct: 590 TAPSPLRSSNP*RKSPTTS 646
>TC18503 similar to UP|Q9DTD4 (Q9DTD4) ORF1, partial (3%)
Length = 504
Score = 27.7 bits (60), Expect = 9.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 783 EEAASWNRDVFGEIGRTKRRLMRR 806
EE A+ ++V G +GR +RRL RR
Sbjct: 100 EEVAATEKEVGGVVGRERRRLRRR 29
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 27.7 bits (60), Expect = 9.3
Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 7/158 (4%)
Frame = +1
Query: 320 PEQNNLNQNTPT-----NQESQPQHMVDSAGSGISPTKGKVVNTNDEPNHEGISSVPNDE 374
P NN TPT + SQP ++ P K + +P H + + P+
Sbjct: 145 PSPNNHPPYTPTPPKTPSPTSQPPYI---------PLPPKTPSPISQPPH--VPTPPSTP 291
Query: 375 TMISGPTKITSAPTGPQPHDGGTGTKVNPNSQGAI--PQQSRADVAHPSHFKSGQHDKLG 432
+ IS P + P P P T PN+ I P + PS H
Sbjct: 292 SPISQPPYTPTPPKTPSPTSQPPHTPTPPNTPSPISQPPYTPTPPKTPSPTNQPPHIPSP 471
Query: 433 PTSGSSSLKKTKMKARGHQRVEGSSEPRRSPNASSNAP 470
P S S + + + P ++P+ +S P
Sbjct: 472 PNSSSPT-----------SQPPNTPSPPKTPSPTSQPP 552
>BP054763
Length = 551
Score = 27.7 bits (60), Expect = 9.3
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -2
Query: 705 GNARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRPFRF 749
G + ++++F VLHLPKL Y IL GP+ + SS+ F
Sbjct: 499 GGSPYLNTFV*KNVLHLPKLSY----ILSLSGPDAV*SSRSIIAF 377
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.328 0.141 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,456,114
Number of Sequences: 28460
Number of extensions: 308978
Number of successful extensions: 2007
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of query: 992
length of database: 4,897,600
effective HSP length: 99
effective length of query: 893
effective length of database: 2,080,060
effective search space: 1857493580
effective search space used: 1857493580
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0113.5