BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0113.14
(584 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP060613 139 1e-33
AV411435 114 4e-26
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 94 6e-20
AV780705 91 5e-19
TC19933 64 7e-11
CN825238 64 9e-11
TC19924 60 8e-10
BP046853 57 1e-08
BE122611 39 5e-08
AV780250 54 5e-08
CB828953 52 3e-07
AV767121 52 3e-07
AV780221 49 2e-06
AV428268 49 2e-06
TC11774 47 1e-05
AU089037 46 1e-05
BP056414 46 1e-05
CB826728 45 3e-05
AV426428 45 4e-05
TC19596 44 6e-05
>BP060613
Length = 378
Score = 139 bits (351), Expect = 1e-33
Identities = 56/106 (52%), Positives = 74/106 (68%)
Frame = +1
Query: 51 WWRGNNDRGIHWKNWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLK 110
WW RG+HW+ W L K EGG+GFKDF + NQA LAKQAWRIL P+A W +LK
Sbjct: 46 WWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK 225
Query: 111 GIYFPNENFLHAKKKRQASWAWNSIIHGRELILNQGRWSIEDGKSV 156
+YFP+ +FL K+ ASW W+S++HGREL+L QG+W + G++V
Sbjct: 226 ALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETV 363
>AV411435
Length = 426
Score = 114 bits (285), Expect = 4e-26
Identities = 49/123 (39%), Positives = 74/123 (59%)
Frame = +3
Query: 207 VLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI* 266
++QTP +T ED +FWP+ G+Y++KSGY ++ + + ++SS PS W +I
Sbjct: 3 IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIW 182
Query: 267 SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPV 326
A++P K++ FLW+ + A+P K NL+RR+ + CPIC ED H L C W R V
Sbjct: 183 GAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAV 362
Query: 327 WFG 329
WFG
Sbjct: 363 WFG 371
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 94.0 bits (232), Expect = 6e-20
Identities = 61/194 (31%), Positives = 92/194 (46%), Gaps = 6/194 (3%)
Frame = -3
Query: 327 WFGSFFQLAPDPS-ILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFR 385
WFGS Q + +P L W + + N E+ ++ L F LW +WK RN F+
Sbjct: 1116 WFGSPLQWSIEPGGNLRFDRWFVERSQFILNHSLNHEEDLATLSFTLWAIWKNRNRVIFQ 937
Query: 386 GERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGI-----RHWTRPPLGFLKCNT 440
E PNPV + ++ L +T++ N + R W PPLG K N+
Sbjct: 936 LEEPNPVNTIFQIRHMQQDANLMSTSQSNKQTTRERNINVTSARDRSWRPPPLGVYKLNS 757
Query: 441 DAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEALILREAVFAAMNLNMDRV 500
DA + G + +D+ G + G + A S + +EAL LRE + A +L +DR+
Sbjct: 756 DASWKAPSPSCTVGVVIRDNLGLLISGTASRPLAPSPIVSEALALREGLILARSLGLDRI 577
Query: 501 VFEADNLGLIEACR 514
+ E+D LIEACR
Sbjct: 576 LSESDCQPLIEACR 535
>AV780705
Length = 524
Score = 90.9 bits (224), Expect = 5e-19
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = -2
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRGNNDRGIHWKNWASLM--FSKAEGGMGFKDF 82
+P+YAM I+ FPK FC+ + + +A FWW+ + + + SK +GG+GF+D
Sbjct: 334 IPSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDL 155
Query: 83 AVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAW 132
N A LA+QAWR+L P A W V+K +YFP W W
Sbjct: 154 RTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPTPALCLLLWDGTHPWMW 5
>TC19933
Length = 472
Score = 63.9 bits (154), Expect = 7e-11
Identities = 26/51 (50%), Positives = 35/51 (67%)
Frame = -3
Query: 257 PSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICE 307
P W SI* A++ +K+K FLWK+ H A+P K NLRRR C ++ CPIC+
Sbjct: 158 PLNSWWSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPICD 6
>CN825238
Length = 692
Score = 63.5 bits (153), Expect = 9e-11
Identities = 31/125 (24%), Positives = 58/125 (45%)
Frame = +3
Query: 182 LMENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQAR 241
L+ R W++ I + + P+ + W + G ++++S Y +
Sbjct: 297 LLIPNARRWNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYNIQ 476
Query: 242 SHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSET 301
KE++ S A SS P K+ WR+ +P+K+K F +++ +P + NL+RR +
Sbjct: 477 VAKEMQTSSSAASSFPWKKLWRT----PVPNKMKHFAYRVARNIIPCRENLQRRGIAVQN 644
Query: 302 SCPIC 306
CP C
Sbjct: 645 ECPTC 659
>TC19924
Length = 525
Score = 60.5 bits (145), Expect = 8e-10
Identities = 37/101 (36%), Positives = 46/101 (44%)
Frame = -2
Query: 291 NLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAK 350
NL +R ++ CPIC A E H HC R V GS FQ + L +K
Sbjct: 344 NLHKRRVLNSPLCPICFAAPETVEHAIFHCNGTRLVGLGSQFQWNTSDA-SRFDSGLLSK 168
Query: 351 LSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNP 391
+ L E Q S LG LLW +WK RN F G+ P+P
Sbjct: 167 IECLRLREENFVQECSSLGCLLWEIWKTRNITVFEGKLPDP 45
>BP046853
Length = 612
Score = 56.6 bits (135), Expect = 1e-08
Identities = 33/96 (34%), Positives = 51/96 (52%), Gaps = 2/96 (2%)
Frame = -3
Query: 448 GNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEALILREAVFAAMNLNMDRVVFEADNL 507
G +AA G + +D + G H +++ +S L AEA +RE + A NL VV E+DN
Sbjct: 409 GPQAALGVLIRDKYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNK 230
Query: 508 GLIEACREQREKGE--ILAIVKDIRKCKLDFPNWIF 541
L+EAC+ GE + + K + L + NW+F
Sbjct: 229 SLVEACKANALIGEASTILVAKACMQSLLSW-NWLF 125
Score = 39.3 bits (90), Expect = 0.002
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 346 WLEAKLSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLA 398
WL +++ L L ++ S L LLW +W+ RNN F+ P+P + A
Sbjct: 588 WLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQA 430
>BE122611
Length = 357
Score = 38.9 bits (89), Expect(2) = 5e-08
Identities = 27/80 (33%), Positives = 33/80 (40%)
Frame = -3
Query: 217 GEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKV 276
G D I W G Y+ KS Y L E G S W + A P K++
Sbjct: 337 GTDRILWTEESNGCYSAKSTY------NLLIEDGGNES-----RFWSLVWKANAPEKVRF 191
Query: 277 FLWKIMHEALPTKVNLRRRH 296
FLW + ALP+ N RR H
Sbjct: 190 FLWLVGRNALPS--NARRHH 137
Score = 35.0 bits (79), Expect(2) = 5e-08
Identities = 18/44 (40%), Positives = 21/44 (46%), Gaps = 2/44 (4%)
Frame = -2
Query: 296 HCVSETSCPICEAPREDAAHVFLHCPWLRPVW--FGSFFQLAPD 337
H S +C C AP EDA HVF CP +W F L P+
Sbjct: 134 HLASSAACIRCGAPSEDANHVFRWCPGSAWMWTQFSRSIALVPN 3
>AV780250
Length = 494
Score = 54.3 bits (129), Expect = 5e-08
Identities = 33/110 (30%), Positives = 51/110 (46%)
Frame = +3
Query: 219 DEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFL 278
D + WP+ G+YT KSGY R+ +T+ + S W++ +P + + +
Sbjct: 174 DVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVWKA---PTLP-RCRELI 341
Query: 279 WKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWF 328
+ + LPT+ LR R + CP CE RE A V L P + WF
Sbjct: 342 GRAFLKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWWF 491
>CB828953
Length = 554
Score = 52.0 bits (123), Expect = 3e-07
Identities = 26/75 (34%), Positives = 40/75 (52%)
Frame = -2
Query: 509 LIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVLARLALCRSIPPHW 568
L+EACR+ + +GEI +IV DI + F FSW R N+ AH +A+L + P+W
Sbjct: 388 LVEACRDGKGQGEIHSIVADILNLRRHFQWCGFSWIPRNSNKVAHEIAKLNYLNDLGPYW 209
Query: 569 CAHLPQELSTTINRD 583
L + + + D
Sbjct: 208 LFSLHPAVKSAVIHD 164
>AV767121
Length = 525
Score = 51.6 bits (122), Expect = 3e-07
Identities = 27/89 (30%), Positives = 41/89 (45%), Gaps = 1/89 (1%)
Frame = +2
Query: 23 SGLPTYAMAILKFPKQFCHQIASQIARFWWRGN-NDRGIHWKNWASLMFSKAEGGMGFKD 81
+ LP + ++ K P + F W G+ N+ I W + K GG+G KD
Sbjct: 68 TALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENKIA*VKWTDVCKPKELGGLGIKD 247
Query: 82 FAVLNQACLAKQAWRILQEPNAFWASVLK 110
N+A L K WR L EP++ W V++
Sbjct: 248 LFTFNKALLGK*RWRYLTEPDSLWRRVIE 334
>AV780221
Length = 461
Score = 48.9 bits (115), Expect = 2e-06
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Frame = +3
Query: 60 IHWKNWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENF 119
I W W+++ K EGG+G ++ + N+A L K WR+L+E + W VL +
Sbjct: 144 IAWVKWSTVCRPKDEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLL------IKY 305
Query: 120 LHAKKKRQASWAWNSIIHGRELILNQGRW-------SIEDGKSVNLLGHRWL 164
+A + +SW WN +H G W I +G V WL
Sbjct: 306 KNAIPQSASSW-WND-LHSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455
>AV428268
Length = 429
Score = 48.9 bits (115), Expect = 2e-06
Identities = 20/61 (32%), Positives = 29/61 (46%)
Frame = +3
Query: 267 SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPV 326
S ++P WK++ + TKVNL RR V CP+C E H+ CP + +
Sbjct: 84 SVKVPSNAIALSWKVLINRVQTKVNLNRRGVVISNVCPLCSLDEESTDHLLFSCPIV*RI 263
Query: 327 W 327
W
Sbjct: 264 W 266
>TC11774
Length = 477
Score = 46.6 bits (109), Expect = 1e-05
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = -3
Query: 525 IVKDIRKCKLDFPNWIFSWTRREGNECAHVLARLALCRSIPPHWCAHLPQELSTTINRD 583
+V+DI+ + W F+W+ R GN+ AH++ L +S+PP+W P + I++D
Sbjct: 472 MVEDIKAWRRHHRVWCFNWSSRIGNQSAHLIVAAQLNKSLPPNWVYSTPYAILRQISKD 296
>AU089037
Length = 245
Score = 46.2 bits (108), Expect = 1e-05
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -1
Query: 257 PSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCV---SETSCPICEAPREDA 313
PS + ++ + P F W+++ + + T+ NLRRR + E CP+C E +
Sbjct: 215 PSSDIFQKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESS 36
Query: 314 AHVFLHCP 321
+H+F CP
Sbjct: 35 SHLFFSCP 12
>BP056414
Length = 606
Score = 46.2 bits (108), Expect = 1e-05
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Frame = -3
Query: 427 HWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAA---SALAAEAL 483
HWTRPP G+ K N D G L +A+ G + +D G + G R L A E +
Sbjct: 565 HWTRPPEGWFKVNVD-GALSGDLQASCGGVVRDAAGSWSKGFARSLGVLRWHXAFFVELM 389
Query: 484 ILREAVFAAMNLNMDRVVFEADNLGLIEACR-----EQREKGEILAIVKDIRKCKLDFPN 538
++ AV M+ ++ +V+ E+D+ ++E + + GE I DI++ +
Sbjct: 388 AVQTAVDFIMSWDIPQVIIESDSQQVVELLQNFNASSPHQYGE---IAWDIQQKISVHGS 218
Query: 539 WIFSWTRREGNECAHVLARLALCRSIPPH 567
+ + T RE N A LA++ L H
Sbjct: 217 IVITSTPREANFLADYLAKVGLSLPFGTH 131
>CB826728
Length = 509
Score = 45.1 bits (105), Expect = 3e-05
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 222 FWPYRDYGQYTIKSGYIQAR-SHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWK 280
FWP G Y+ KSGY R +K L S ++ PS W+++ SA + K +W+
Sbjct: 211 FWPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSL-IWKTVWSASSLPRCKEVMWR 387
Query: 281 IMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHC 320
LP + L+RR + S P E HV L C
Sbjct: 388 ACAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507
>AV426428
Length = 413
Score = 44.7 bits (104), Expect = 4e-05
Identities = 30/109 (27%), Positives = 48/109 (43%), Gaps = 2/109 (1%)
Frame = +3
Query: 279 WKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSF--FQLAP 336
W+ LP K +L R + CP C A + A H L CP + P+WF S F+L
Sbjct: 96 WRACLGVLPVKASLHARGLAEDPICPRCLAAPKTADHAVLFCP*VHPIWFASSLGFRLNQ 275
Query: 337 DPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFR 385
+ + A Q+++ ++ E L +L+ +W +N FR
Sbjct: 276 ECKMHE----FVADFMQVAD*DTCGEFLT-----ILYAIWTAQNELCFR 395
>TC19596
Length = 499
Score = 44.3 bits (103), Expect = 6e-05
Identities = 42/151 (27%), Positives = 64/151 (41%), Gaps = 3/151 (1%)
Frame = +1
Query: 437 KCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEALILREAVFAAMNLN 496
+ ++D F ++ G I +D G ++ G + AL AE L+ + N +
Sbjct: 4 RMDSDGAFKHDDDRMGMGGIVRDAHGAWISGFYAGSLGGDALRAEIAALKHGLTLLWNAH 183
Query: 497 MDRVVFEADNLGLIEACREQREKGEILAI-VKDIRKCKLDFPNWI--FSWTRREGNECAH 553
+ R E D L ++EA R + LA + DIR LD +W ++ RE N A
Sbjct: 184 VRRATCEVDCLDIVEALENDRYQFHALASELLDIRLL-LD-RDWTVTLAYVPREANAAAD 357
Query: 554 VLARLALCRSIPPHWCAHLPQELSTTINRDM 584
LA L P PQEL + RD+
Sbjct: 358 CLAGLGASLLCPLTCLESPPQELQPILARDL 450
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.138 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,837,842
Number of Sequences: 28460
Number of extensions: 210952
Number of successful extensions: 1443
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of query: 584
length of database: 4,897,600
effective HSP length: 95
effective length of query: 489
effective length of database: 2,193,900
effective search space: 1072817100
effective search space used: 1072817100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0113.14