TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0112.9
         (1105 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV771808                                                               29  3.6
TC9316 similar to UP|Q94F86 (Q94F86) Early light inducible prote...    29  4.7
TC14834 similar to UP|Q8RX56 (Q8RX56) AT5g06970/MOJ9_14, partial...    29  4.7
TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, p...    28  6.1
TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, c...    28  6.1
TC10839                                                                28  7.9

>AV771808 
          Length = 433

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 444 CMERSKAFSLAYSR-KVSWFDCHRQFLSEDHEYRKCPKKFTKGKGE-TSTKPRR 495
           C + +++FS +YS+ + SW+  + Q  S DH+    P+ F  G G  T T+ RR
Sbjct: 258 CRKPNRSFSKSYSK*RSSWWRGNPQD*SPDHQPAPGPEAFIGG*GSGTRTQNRR 419


>TC9316 similar to UP|Q94F86 (Q94F86) Early light inducible protein,
           partial (84%)
          Length = 831

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 18/57 (31%), Positives = 31/57 (53%), Gaps = 3/57 (5%)
 Frame = -1

Query: 537 LPYWKTLLLPH---NIDVMHTERNVFLNILFTVMDTKGKTKDTFKSRKDLEEYCLRG 590
           + Y+KT+L+ H     +++H   +  LNIL      KG+   T  S+  + E+C+RG
Sbjct: 747 ITYYKTILIRHCS*AFELLHQGSS--LNIL-----CKGQGNQTQHSKPSIPEFCIRG 598


>TC14834 similar to UP|Q8RX56 (Q8RX56) AT5g06970/MOJ9_14, partial (8%)
          Length = 539

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 265 FPLVPRLQRLYSSMQTASHMRWHHEHYKEPDFLSHPSDA 303
           FP   ++  L S++++ SH    H  + +PDF  HP +A
Sbjct: 161 FPGH*QISGLLSALESRSHAT*SHVAHVQPDFRRHPEEA 45


>TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, partial
           (54%)
          Length = 710

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 16/67 (23%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 234 EMLQSCSPEKRYKEVRKQGKEKFVPQQKMWYFPLVPRLQRLYSSMQTASHM-RWHHEHYK 292
           + +    PE+     R+   +K +P  K     ++  L RL+      +H+ R HH  ++
Sbjct: 49  QFIHHVKPERSLLRPRRPSAQKNLPPPKPRRRRMLRVLLRLHLQPHLQTHLHRPHHHRHR 228

Query: 293 EPDFLSH 299
            P  L+H
Sbjct: 229 RPHLLAH 249


>TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, complete
          Length = 1907

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 19/100 (19%)
 Frame = +1

Query: 461 WFDCHRQFLSEDHEYRKCPKKFTKGK-------GETSTKPRRL--NGEEVWER------- 504
           W  C + FL  D  ++ CP     G        GE    P  L     + WER       
Sbjct: 355 W**CIQHFLQRDWCWKACPSCCLCGS*AHRD**GEDWNLPPALPPGAADQWERRCCQQLC 534

Query: 505 ---IKHLPSKEESKEGPSQGYGVKHHWTSRSIFWELPYWK 541
              + H      S  GP Q  G + HW++R +  +  +W+
Sbjct: 535 PWSLYHWERDR*SVFGPHQKAG*QLHWSARVLGLQCCWWR 654


>TC10839 
          Length = 769

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 1069 SVV*EKNYHRTKWSWRIKRKKMK 1091
            S+V*EKN+ R+ W WR  +  MK
Sbjct: 154  SLV*EKNHRRSLWWWR*PKTPMK 222


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.348    0.152    0.547 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,975,899
Number of Sequences: 28460
Number of extensions: 364380
Number of successful extensions: 3437
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3437
length of query: 1105
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1005
effective length of database: 2,051,600
effective search space: 2061858000
effective search space used: 2061858000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 60 (27.7 bits)