BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0112.11
(1331 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427921 135 4e-32
BP066094 115 1e-29
AV780009 109 3e-24
BP075943 94 1e-19
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 90 2e-18
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 75 2e-17
BP084332 86 3e-17
AV424544 68 8e-12
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 44 1e-11
AU088980 66 4e-11
BP063694 65 7e-11
BP033602 59 5e-09
TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprot... 37 2e-07
AV766665 53 4e-07
BP043850 52 5e-07
AV410378 52 8e-07
BP052632 51 1e-06
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 50 3e-06
AV766088 48 9e-06
BP057233 48 1e-05
>AV427921
Length = 284
Score = 135 bits (340), Expect = 4e-32
Identities = 62/94 (65%), Positives = 78/94 (82%)
Frame = +1
Query: 602 RQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVK 661
RQ TA+YTPQQNGVSERKNRTI+NMVR +LT +P+ F PEAV WS++I NRSPT+ V+
Sbjct: 1 RQ*TAAYTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQ 180
Query: 662 NITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQR 695
N+ PEE WSG++P+V+ FRI C+AYAHVPD +R
Sbjct: 181 NMMPEEAWSGRQPAVDHFRISRCLAYAHVPDQKR 282
>BP066094
Length = 532
Score = 115 bits (288), Expect(2) = 1e-29
Identities = 58/150 (38%), Positives = 93/150 (61%)
Frame = +2
Query: 937 ARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHK 996
++ + IR +++ + + Q++VKSAFL+G I E V+V QP G + ++KL K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 997 ALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNC 1056
+LYGL+QAPRAWY R+ S+ + VR D TL+ K ++ + +IV +YVDD+I+
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDI-LIVQIYVDDIIFGSAN 442
Query: 1057 ELLISEFKASMEREFDMSDLGKMSYFLGVE 1086
L EF M+ EF+M +G++ YFLG++
Sbjct: 443 PSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 32.7 bits (73), Expect(2) = 1e-29
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 921 YAQQQGIDFTEVFAPVAR 938
Y+QQ GID+TE FAPVAR
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>AV780009
Length = 529
Score = 109 bits (272), Expect = 3e-24
Identities = 56/153 (36%), Positives = 86/153 (55%)
Frame = -1
Query: 1178 QIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAW 1237
Q RV+RY+ G G+ + +KL +Y+DSD+AG D R+S +GY LG+ I+W
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 1238 SSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKN 1297
+KKQ VS S++EAE+ A + C+ WL + L ++CDN S + ++ N
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 1298 PVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
P H R+KHI + H +R ++ G I L+ ST
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPIST 71
>BP075943
Length = 547
Score = 94.4 bits (233), Expect = 1e-19
Identities = 53/161 (32%), Positives = 90/161 (54%), Gaps = 3/161 (1%)
Frame = -3
Query: 1045 LYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKE 1104
LYVDD++ GN I K+S+ +F + DLG+ YFLG+EI +++ GI + Q KYA +
Sbjct: 515 LYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 336
Query: 1105 VLERFGMKNSNPVRNPVVPGTKLNKRGCGSE---VDATQYKQMIGSLMYLTVSRPDLMYS 1161
++ G P GT G + D Y++++G L+YL +RPD+ ++
Sbjct: 335 LISDSGHFGFQP--RFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFA 162
Query: 1162 VSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGS 1202
V+ +S+++ PT++H Q + ++YL G+ G+ Y S S
Sbjct: 161 VNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSS 39
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 90.1 bits (222), Expect = 2e-18
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 8/146 (5%)
Frame = +2
Query: 1013 DSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFD 1072
DS+ G+ R SDH Y K+ ++ II+ LYVDD++ G + + E KA + REFD
Sbjct: 5 DSFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFD 184
Query: 1073 MSDLGKMSYFLGVEILQNSEG--IFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKR 1130
M DLG + LG++I ++ + I++ Q Y ++VL RF M++ NP+ P+ KL+
Sbjct: 185 MKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSS 364
Query: 1131 GCGS------EVDATQYKQMIGSLMY 1150
S E+ Y +GSLMY
Sbjct: 365 MIPSSEAERMEMSRVPYASAVGSLMY 442
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 74.7 bits (182), Expect(2) = 2e-17
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Frame = -1
Query: 1098 QSKYAKEVLERFGMKNSNPVRNPVVPGTKLN--KRGCGSEVDATQYKQMIGSLMYLTVSR 1155
Q Y ++L++F M NS + + + G ++ +R G VD+T YK +IGS+ YL R
Sbjct: 739 QKIYVDDILKKFKMTNSKYI-STTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVR 563
Query: 1156 PDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAG 1215
D++ V L SR+ME P + H Q +R +RY+ GT+ GI M +I+ +S
Sbjct: 562 SDIVCGVGLRSRFME-P*DCH*QGAQRSLRYIKGTLKDGI------FMLVITM*NS---- 416
Query: 1216 DVDDRKST-SGYVFMLGSGSIAWSS 1239
+D + T GY F LG G+I+WSS
Sbjct: 415 -LDTQIVTRPGYAFHLGRGAISWSS 344
Score = 32.3 bits (72), Expect(2) = 2e-17
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -2
Query: 1242 QAVVSLSTTEAEFIAAVSCACQCIWLRRIL 1271
Q+VV+L EA +IAA SCA Q I L RIL
Sbjct: 342 QSVVALYANEA*YIAAESCATQAI*LTRIL 253
>BP084332
Length = 368
Score = 86.3 bits (212), Expect = 3e-17
Identities = 40/90 (44%), Positives = 60/90 (66%)
Frame = +2
Query: 1242 QAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMH 1301
Q+ ++LST EAE+I+A C+ Q +W++ L Q+ IYCDN++ I LSKNP++H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDY-QILESNIPIYCDNTAAISLSKNPILH 208
Query: 1302 GRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
R+KHI V+YHF+RD V+ G + L T+
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTD 298
>AV424544
Length = 276
Score = 68.2 bits (165), Expect = 8e-12
Identities = 34/92 (36%), Positives = 57/92 (61%)
Frame = +3
Query: 1010 SRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMER 1069
+++ SY G+++S DH+L+ K + +I+ +YVDDLI GN I K ++
Sbjct: 3 AKLSSYLHILGYIQSAHDHSLFTKFRDASFTVIL-VYVDDLILAGNDLNEIQCVKNKLDI 179
Query: 1070 EFDMSDLGKMSYFLGVEILQNSEGIFMCQSKY 1101
+F + DLG + YFLG+E+ ++S G+F+ Q KY
Sbjct: 180 QFRIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 44.3 bits (103), Expect(2) = 1e-11
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 1282 STIYCDNSSTIKLSKNPVMHGRSKHINVRYHF 1313
+ +YCDN I L +N H RSKHI+VRYH+
Sbjct: 167 TVLYCDNQGAIYLGQNSTFHSRSKHIDVRYHW 262
Score = 43.1 bits (100), Expect(2) = 1e-11
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 1233 GSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRIL 1271
G++AW S+ Q V+LST EAEFIAA + +W++ L
Sbjct: 21 GAVAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFL 137
>AU088980
Length = 360
Score = 65.9 bits (159), Expect = 4e-11
Identities = 31/109 (28%), Positives = 57/109 (51%)
Frame = +2
Query: 613 NGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGK 672
N + ERK+R I+N+ R ++ +P+ W AV + Y+ N P+ +K P + +
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 673 KPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYD 721
P++ ++FG + Y+ +KLD R+ KC++LG + Y + D
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMD 328
>BP063694
Length = 511
Score = 65.1 bits (157), Expect = 7e-11
Identities = 43/120 (35%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = -2
Query: 451 ELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKP--CEECLKGKQHIDPFPQKSTWRA 508
ELWH R GH+ + +K L + L + L KP C C K F + RA
Sbjct: 363 ELWHSRLGHVNFDIIKQLHKHGC---LDVSSILPKPICCTSCQMAKSKRLVFHDNNK-RA 196
Query: 509 ERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAE 568
L LIH D+ GP S YF+ F+DDF R TW Y L KS + +FK+ E
Sbjct: 195 SAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFME 16
>BP033602
Length = 533
Score = 58.9 bits (141), Expect = 5e-09
Identities = 33/97 (34%), Positives = 47/97 (48%)
Frame = +3
Query: 444 TTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQK 503
T+++D+ LWH R GH + L+ L + CE C+ K P+
Sbjct: 252 TSVRDQIMLWHNRLGHPNFQYLRHLFPDLFKN----VNCSSLECESCVLAKNQRAPY-YS 416
Query: 504 STWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDD 540
+ A R LIHSD+ GP K + KR+F+TFIDD
Sbjct: 417 QPYHASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDD 527
>TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(4%)
Length = 528
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +2
Query: 1287 DNSSTIKLSKNPVMHGRSKHI 1307
DN S I L+KNPV HGRSKHI
Sbjct: 5 DNKSAIDLAKNPVSHGRSKHI 67
Score = 35.8 bits (81), Expect(2) = 2e-07
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +3
Query: 1306 HINVRYHFLRDLVRDGRIELVHCSTE 1331
+I +YHFLRD V G+I L HC T+
Sbjct: 69 NIETKYHFLRDQVTKGKISLKHCGTD 146
>AV766665
Length = 601
Score = 52.8 bits (125), Expect = 4e-07
Identities = 25/75 (33%), Positives = 39/75 (51%)
Frame = +3
Query: 1182 RVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKK 1241
R+ YL G +++ G + +T +DY G + DR ST GY L + W SK+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 1242 QAVVSLSTTEAEFIA 1256
Q +++ S+ EAE A
Sbjct: 552 QNIIARSSGEAELRA 596
>BP043850
Length = 515
Score = 52.4 bits (124), Expect = 5e-07
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = -1
Query: 1263 QCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGR 1322
+ IWLR +L LG +Q + + ++ DN+S I+++ NPV H ++HI V H +R+
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 1323 IELVHCST 1330
I L H ST
Sbjct: 332 ITLPHVST 309
>AV410378
Length = 358
Score = 51.6 bits (122), Expect = 8e-07
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = +1
Query: 850 SDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAELP 887
S+P Y EA K + WRKAMD EI+A+ERN+TW L + P
Sbjct: 235 SEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKP 348
>BP052632
Length = 489
Score = 50.8 bits (120), Expect = 1e-06
Identities = 26/74 (35%), Positives = 43/74 (57%)
Frame = -3
Query: 664 TPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPV 723
TP E W G++P+V++F FGC + + K DN+ K I LG S SKAY +++
Sbjct: 484 TPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGKFDNKFDKRILLGYSSNSKAYIVFNSR 305
Query: 724 SKKIIINRDVVFDE 737
++ + + +V FD+
Sbjct: 304 TQVVEESINVKFDD 263
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 49.7 bits (117), Expect = 3e-06
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +1
Query: 1266 WLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIEL 1325
WL +L L + + +YCDN+S ++ NPV H R+KHI + H +R+ ++ G I L
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1326 VHCST 1330
+ S+
Sbjct: 184 LPISS 198
>AV766088
Length = 501
Score = 48.1 bits (113), Expect = 9e-06
Identities = 32/104 (30%), Positives = 47/104 (44%), Gaps = 1/104 (0%)
Frame = -3
Query: 452 LWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERK 511
LWH R GH S L+ L + L CE C+ GK PF +
Sbjct: 307 LWHSRLGHPSSSALRYLRSNKFISY--ELLNYSPVCESCVFGKHVRLPFVSSNNVTV-MP 137
Query: 512 LQLIHSDI-CGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKS 554
++HSD+ P+ S++ R+++ F+DDF W + LS KS
Sbjct: 136 FDILHSDLWTSPVL--SSAGHRFYVLFLDDFTDFLWTFPLSNKS 11
>BP057233
Length = 473
Score = 47.8 bits (112), Expect = 1e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = -2
Query: 1284 IYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
++CDN S L+ NPV+H RSKHI + H++RD V + + + T
Sbjct: 445 LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPT 305
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,629,386
Number of Sequences: 28460
Number of extensions: 285073
Number of successful extensions: 1791
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of query: 1331
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1230
effective length of database: 2,023,140
effective search space: 2488462200
effective search space used: 2488462200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0112.11