TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0111b.9
         (341 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI418734                                                               28  2.9
BP047508                                                               27  6.5
BP047468                                                               27  6.5
TC12260                                                                26  8.4
TC20098 similar to UP|APG8_YEAST (P38182) Autophagy protein 8 [C...    26  8.4
AV770138                                                               26  8.4

>BI418734 
          Length = 539

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 73  WISWLASSQVGHVGSFEAAWWSWYPRCDTREYFLVEEIGVGLC 115
           W+SWL  +  G +  +   +W W  R  +  +FL   I V +C
Sbjct: 236 WLSWLVHAY-GLLVWWRLVYWEWVARHSSLRFFLKHLILVVIC 361


>BP047508 
          Length = 504

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 9/22 (40%), Positives = 16/22 (71%)
 Frame = -3

Query: 66  LYLVFPSWISWLASSQVGHVGS 87
           +Y +FPSW ++L+S  V  +G+
Sbjct: 472 MYFIFPSWTNFLSSPIVSSMGT 407


>BP047468 
          Length = 502

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 9/22 (40%), Positives = 16/22 (71%)
 Frame = -2

Query: 66  LYLVFPSWISWLASSQVGHVGS 87
           +Y +FPSW ++L+S  V  +G+
Sbjct: 435 MYFIFPSWTNFLSSPIVSSMGT 370


>TC12260 
          Length = 320

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -1

Query: 81  QVGHVGSFEAAWW--SWYPR 98
           ++GH+GS   AWW   W PR
Sbjct: 233 RLGHLGSTGLAWWLSPWLPR 174


>TC20098 similar to UP|APG8_YEAST (P38182) Autophagy protein 8 [Contains:
           Apg8FG], partial (71%)
          Length = 468

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 12/34 (35%), Positives = 15/34 (43%)
 Frame = -3

Query: 192 FCAYFRYRDDSCRCYCLW*MERLAVVHSHPYFRH 225
           F  YFR     C  +C    +    +H HPYF H
Sbjct: 274 FMNYFRSSSQMCSPHC----KSYKGIHLHPYFPH 185


>AV770138 
          Length = 483

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -1

Query: 191 SFCAYFRYRDDSCRCY 206
           SFCAY+R+   +C CY
Sbjct: 75  SFCAYWRF*TPTCICY 28


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.358    0.162    0.621 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,791,967
Number of Sequences: 28460
Number of extensions: 134997
Number of successful extensions: 1597
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of query: 341
length of database: 4,897,600
effective HSP length: 91
effective length of query: 250
effective length of database: 2,307,740
effective search space: 576935000
effective search space used: 576935000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 55 (25.8 bits)