TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0111b.7
         (402 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8686 similar to UP|O23724 (O23724) GAI protein, partial (22%)        28  2.1
TC18551 similar to UP|Q9FUP0 (Q9FUP0) 12-oxo-phytodienoate reduc...    28  2.1

>TC8686 similar to UP|O23724 (O23724) GAI protein, partial (22%)
          Length = 786

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 18/41 (43%), Positives = 23/41 (55%)
 Frame = +3

Query: 362 KGRYILYQ*RRH*TWSNSQKFTLPSRSTFKHCF*KRPKIHF 402
           +GRYI    RR     N ++FTL SRS  +H F    +IHF
Sbjct: 669 EGRYIF---RRRPCEKNLRRFTLLSRSQQQHFFSDSLQIHF 782


>TC18551 similar to UP|Q9FUP0 (Q9FUP0) 12-oxo-phytodienoate reductase,
           partial (28%)
          Length = 425

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 298 CCGVCSCVLNLTESKSGALEACGNDAIT*CTEMKIRLVSLWT 339
           CC VC C  N+    S  +E C   +  * +   + +V+ W+
Sbjct: 250 CCWVCQCSWNIFRRAS*GMEECSGCSAC*RSYYLLSIVACWS 375


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.353    0.155    0.544 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,087,095
Number of Sequences: 28460
Number of extensions: 94471
Number of successful extensions: 1100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of query: 402
length of database: 4,897,600
effective HSP length: 92
effective length of query: 310
effective length of database: 2,279,280
effective search space: 706576800
effective search space used: 706576800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 56 (26.2 bits)