TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0110a.15
         (184 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV770703                                                               35  0.008
AV766014                                                               29  0.55
TC18154 UP|Q40192 (Q40192) RAB11B, complete                            28  0.72
BP039012                                                               27  2.7
TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Ar...    26  3.6
TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b b...    26  3.6
TC14521 similar to UP|O04894 (O04894) Transaldolase  , partial (...    26  4.7
AU251819                                                               25  6.1
TC8692 UP|Q7XY82 (Q7XY82) Photosystem II 12kD extrinsic protein,...    25  6.1
TC17698                                                                25  6.1
TC11446 similar to GB|AAM51367.1|21436395|AY117292 IAA-amino aci...    25  8.0
TC18841                                                                25  8.0
TC8673 similar to UP|Q9LHL9 (Q9LHL9) Kinesin (Centromere protein...    25  8.0

>AV770703 
          Length = 539

 Score = 35.0 bits (79), Expect = 0.008
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 13  HSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKE 61
           H  +  T   R+Y FL++  ++YF I D     S  L FL  +R   ++
Sbjct: 197 HRWYFETAGKRSYGFLMEDGYVYFTIVDEGLGNSVVLRFLEHVRDEFRK 343


>AV766014 
          Length = 391

 Score = 28.9 bits (63), Expect = 0.55
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 25  YTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRS 57
           YTF +   F  FAIF H+HT+     FLN  RS
Sbjct: 114 YTFHV*YFFYKFAIFTHKHTR*IDFPFLNW*RS 16


>TC18154 UP|Q40192 (Q40192) RAB11B, complete
          Length = 1183

 Score = 28.5 bits (62), Expect = 0.72
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 11  STHSLFSHTVNNRTYTFLIDPPFIY-FAIFDHRHTKSQTLTFLNRIRSSLKETLDSVNDS 69
           +T S+ S T  +   +F    PFI  F  F H +T +Q   F+N+ +    E L+ +N +
Sbjct: 372 NT*SILSCTFFSCRCSFSASTPFIS*FIFFPHGNTSNQKTQFVNKRKCRNMEKLEKMNQT 193


>BP039012 
          Length = 582

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = +3

Query: 44  TKSQTLTFLNRIRSSLKETLDSV---NDSTAPPPLSLQTPFDLI-----LQEILHLDD 93
           + S + T   + R SL  T ++    NDST PPP    +P  +      LQE+ H+ +
Sbjct: 192 SSSSSTTSFTQWRFSLPTTPNTTTTQNDSTTPPPPPSPSPSTITITIPNLQELFHVSE 365


>TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
           thaliana;}, partial (28%)
          Length = 812

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 57  SSLKETLDSVNDSTAPPPLSLQTP 80
           S  KETL  +N S+ PPP    TP
Sbjct: 310 SGSKETLPELNPSSPPPPQLSTTP 381


>TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b binding
          protein from photosystem I precursor, partial (98%)
          Length = 1199

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 39 FDHRHTKSQTLTFLNRIRSSLKETLDSVNDSTAPPPLSL 77
          FDH+HT ++ LT  +RI  S  E L S      P PL L
Sbjct: 1  FDHKHTSAKKLTKPHRITVSRGEGL-SWLQRVLPLPLQL 114


>TC14521 similar to UP|O04894 (O04894) Transaldolase  , partial (86%)
          Length = 1695

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 119  SATVIANRTSAKGLAAAAATELVELEKDAVEEALVGSAIQIEGFRRVWLDLRSRLSLLHE 178
            S T+ +N + A+G+  A       L+K  V+ + VGS +++EG         S L  L E
Sbjct: 1145 SRTIDSNASEAEGIYNA-------LQKVGVDWSFVGSQLELEGVESFKKSFDSLLDSLQE 1303


>AU251819 
          Length = 368

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 52  LNRIRSSLKETLDSVNDSTAPPPLSLQTPFDLILQEILHLDDGNRSPP 99
           +N+   S+K+   S + S++PPP SL +    I   +++   G+  PP
Sbjct: 124 INKDSHSIKK---SPSSSSSPPPPSLSSSSSSISSSLVNSVAGSNKPP 258


>TC8692 UP|Q7XY82 (Q7XY82) Photosystem II 12kD extrinsic protein, partial
           (9%)
          Length = 687

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 19/56 (33%), Positives = 27/56 (47%)
 Frame = -3

Query: 35  YFAIFDHRHTKSQTLTFLNRIRSSLKETLDSVNDSTAPPPLSLQTPFDLILQEILH 90
           + A   HRHT S TL FL   + +L     ++N     P    QT F+ IL + +H
Sbjct: 478 WHARISHRHTNSPTLLFLQGKKYNLLR--KNLNKQHPLP----QTQFEGILLDDIH 329


>TC17698 
          Length = 504

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 33  FIYFAIFDHRHTKSQTLTFLNRIRSSLKE 61
           F+YF++FDH  + +Q+L   + + +  KE
Sbjct: 325 FVYFSLFDHEFS-NQSLALAHLLETETKE 242


>TC11446 similar to GB|AAM51367.1|21436395|AY117292 IAA-amino acid hydrolase
           {Arabidopsis thaliana;}, partial (8%)
          Length = 400

 Score = 25.0 bits (53), Expect = 8.0
 Identities = 14/46 (30%), Positives = 23/46 (49%)
 Frame = +2

Query: 55  IRSSLKETLDSVNDSTAPPPLSLQTPFDLILQEILHLDDGNRSPPA 100
           I +S   +L + +  TA     ++ P D +    LHL  GN +PP+
Sbjct: 152 ITASEHASLHTSHPPTASVLRRVKFPGDTVSLSSLHLRSGNNTPPS 289


>TC18841 
          Length = 568

 Score = 25.0 bits (53), Expect = 8.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 50  TFLNRIRSSLKETLDSVNDSTAPPPLSLQTPFDLILQEILH 90
           T   R+  SL +T +    +  P P+   T   LIL EILH
Sbjct: 409 TCQERLHVSLGKTFEIFLTTVFPFPVRTWTSSPLILSEILH 287


>TC8673 similar to UP|Q9LHL9 (Q9LHL9) Kinesin (Centromere protein) like
           heavy chain-like protein, partial (11%)
          Length = 819

 Score = 25.0 bits (53), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 127 TSAKGLAAAAATELVELEKDAVE 149
           T AKGLA+AAA EL  L ++  +
Sbjct: 35  TYAKGLASAAAVELKALSEEVAK 103


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,070,188
Number of Sequences: 28460
Number of extensions: 41164
Number of successful extensions: 256
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of query: 184
length of database: 4,897,600
effective HSP length: 85
effective length of query: 99
effective length of database: 2,478,500
effective search space: 245371500
effective search space used: 245371500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)