TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0110a.10
         (1408 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16645                                                               122  9e-32
BP085968                                                               53  4e-07
TC8085 similar to GB|BAB03033.1|11994717|AP001300 AtDMC1 (meioti...    31  1.5
AU089042                                                               29  4.5
CB828645                                                               29  5.9

>TC16645 
          Length = 596

 Score =  122 bits (307), Expect(2) = 9e-32
 Identities = 55/119 (46%), Positives = 79/119 (66%)
 Frame = +1

Query: 747 MDANCKYVHGRQLTYVEFPELFVYDPKSKSWHPRKQGESIGRMSFVPPGTGELYYLRMLL 806
           M+AN KY  GR LTY EFP  F+Y   +  W P+++  S+GR+ F+ PG GE YY+R+LL
Sbjct: 7   MNANKKYQEGRNLTYAEFPSEFLYHQHTTKWVPKQKRFSLGRLPFIAPGMGENYYMRVLL 186

Query: 807 NVQRGCTKYEDLRSVNNNVHDTFRGACEALGLLKDDREFIDGILDVATLAGGAYTRALF 865
            +Q+GC  ++ +++V   V+ TF  ACEA+GLL+DDRE++DGI   +    G   R LF
Sbjct: 187 TMQKGCDSFKSIKTVKGVVYPTFHDACEAMGLLEDDREYVDGISISSEFGSGTQLRKLF 363



 Score = 32.7 bits (73), Expect(2) = 9e-32
 Identities = 13/37 (35%), Positives = 20/37 (53%)
 Frame = +2

Query: 865 FVSFLLPNSMCNPLHVWNETWHVLADGIACDLQRKHN 901
           F   L+ N +  P  VW ++W +L DGI  D ++  N
Sbjct: 362 FTRMLMTNLISRPQEVWRKSWSLLCDGILYDRRKTLN 472


>BP085968 
          Length = 341

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 39/105 (37%), Positives = 52/105 (49%)
 Frame = +1

Query: 1010 *SV*GINFCSI*G*WWVFLCQWTWWYGENILVENFNF*VKIRKKKSYSMLLQVA*LLSYF 1069
            *SV*  N  S+   W V    W W +G+NI VE   F  KI +   +   ++    L   
Sbjct: 25   *SV*TNNEFSLVRRWRVLFSIWIWRFGKNICVEYMVFRFKITRTHGFERGIKWYCFLVVA 204

Query: 1070 QVVGLHILFFAFL*MLMRIQYVESFKVVQKLNYFSQPVLLFGMKH 1114
               GL I  F F+  LM  Q V S K +++LNYF + V  +GMKH
Sbjct: 205  WRKGLLIQGFLFIYQLMIYQPVISSKDLKRLNYFKRQVRSYGMKH 339


>TC8085 similar to GB|BAB03033.1|11994717|AP001300 AtDMC1 (meiotic
           recombination protein)-like protein {Arabidopsis
           thaliana;} , partial (8%)
          Length = 500

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/31 (48%), Positives = 18/31 (57%)
 Frame = +1

Query: 874 MCNPLHVWNETWHVLADGIACDLQRKHNNRG 904
           M NP HVWN TW +LA+ I      +H  RG
Sbjct: 115 MTNPDHVWNITWKLLANDI------QHEYRG 189


>AU089042 
          Length = 191

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 21/47 (44%), Positives = 24/47 (50%)
 Frame = +1

Query: 1339 FSNKVLMLC*CEI*IYLLVCAMALD*LLHIFDQMLLEGLLFLALMLE 1385
            F  KV +LC C I  +LLV A   D LL    QM L     L L+LE
Sbjct: 7    FLXKVYLLCSCXIXTFLLVYATVQDLLLTTLVQM*LVLPFSLGLILE 147


>CB828645 
          Length = 527

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 1187 C*HYHKTCVCFLIQMLQMLMILENLPSGC*MLEMVTWESIMMVNL 1231
            C HY K+C C  + +L++L++  NL   C +L M+      + N+
Sbjct: 312  CSHYSKSCFCVKLGVLEVLLLQLNL---CLILTMLITMKCFLPNI 437


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.353    0.158    0.566 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,928,179
Number of Sequences: 28460
Number of extensions: 415228
Number of successful extensions: 5367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3990
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 4376
length of query: 1408
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1306
effective length of database: 1,994,680
effective search space: 2605052080
effective search space used: 2605052080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 61 (28.1 bits)