BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0109.6
(545 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 248 2e-97
TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%) 248 2e-66
TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precu... 221 3e-58
TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesteras... 219 9e-58
TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precu... 170 6e-43
TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 135 2e-32
CN825195 129 2e-30
AV765593 123 7e-29
AI967495 123 7e-29
BP050971 115 2e-26
AV426815 114 4e-26
TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precur... 113 7e-26
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ... 112 2e-25
TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isof... 108 2e-24
TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like... 101 3e-22
TC10625 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 74 5e-22
BP039243 98 4e-21
BP039949 92 2e-19
BP031849 75 5e-19
TC17425 weakly similar to UP|Q9FM79 (Q9FM79) Similarity to pecti... 87 5e-18
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 248 bits (633), Expect(2) = 2e-97
Identities = 117/189 (61%), Positives = 149/189 (77%)
Frame = +2
Query: 246 LDGSGHYRTITEAVNAAPSHSNRRYVIYVKKGLYRENVDMKRKMTNIMLVGDGIGQTIIT 305
LDGSG+Y T+ EAV AAP +S +R+VIYVKKG+Y E ++K+K NIM+VGDG+ T+I+
Sbjct: 26 LDGSGNYTTVMEAVLAAPDYSMKRFVIYVKKGVYEEYAEIKKKKWNIMMVGDGMDVTVIS 205
Query: 306 SNRNFMQGWTTFRTATVAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSIE 365
NR+F GWTTF++AT AVSG+GFIAR ++F+NTAGP HQAVALR DSD + F+RCSI
Sbjct: 206 GNRSFGDGWTTFKSATFAVSGRGFIARGITFQNTAGPEKHQAVALRSDSDLAVFFRCSIT 385
Query: 366 GFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRAPLPLQKVTVTAQGRKS 425
G+QD+LY H++RQFY+EC I GT+DFIFG+ AV QNC I R L QK T+TAQGRK
Sbjct: 386 GYQDSLYPHTMRQFYKECRITGTVDFIFGDATAVFQNCNIQARKGLQDQKNTITAQGRKD 565
Query: 426 PHQSTGFTI 434
P QS+GF +
Sbjct: 566 PGQSSGFFV 592
Score = 125 bits (313), Expect(2) = 2e-97
Identities = 57/99 (57%), Positives = 72/99 (72%)
Frame = +3
Query: 445 TYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVK 504
TYLGRPWK+YSRTV++ ++MS +V +GWLEW F TL+YGEY NYG GA + RVK
Sbjct: 651 TYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-DTLFYGEYLNYGAGAGVGNRVK 827
Query: 505 WPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGL 543
W GYH++ D + A FTV +FI G+ WLP TGV +T GL
Sbjct: 828 WGGYHVLND-SEAGKFTVNQFIEGNLWLPSTGVAYTGGL 941
>TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%)
Length = 848
Score = 248 bits (633), Expect = 2e-66
Identities = 121/218 (55%), Positives = 159/218 (72%), Gaps = 12/218 (5%)
Frame = +1
Query: 247 DGSGHYRTITEAVNAAPSHSNRR---YVIYVKKGLYRENVDMKRKMTNIMLVGDGIGQTI 303
+G+ +Y +I +A+ AAP+H+ + ++IYV++G Y E V + ++ NI+LVGDGI +TI
Sbjct: 172 NGTDNYTSIGDAIAAAPNHTKPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGDGINKTI 351
Query: 304 ITSNRNFMQGWTTFRTATVAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCS 363
IT N + + GWTTF ++T AVSG+ F A D++FRNTAGP HQAVA+R ++D S FYRCS
Sbjct: 352 ITGNHSVIDGWTTFNSSTFAVSGERFTAVDVTFRNTAGPAKHQAVAVRNNADLSTFYRCS 531
Query: 364 IEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRAPLPLQKVTVTAQGR 423
EG+QDTLY HSLRQFYREC+IYGT+DFIFGN A V QNC IY R PLP QK VTAQGR
Sbjct: 532 FEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPLPFQKNAVTAQGR 711
Query: 424 KSPHQSTGFTIQDSFI---------LATQPTYLGRPWK 452
P+Q+TG +IQ+ I L + +YLGRPW+
Sbjct: 712 TDPNQNTGISIQNCTIDAAPDLAAELNSTLSYLGRPWE 825
>TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precursor
(Pectin methylesterase 3) (PE 3) , partial (34%)
Length = 773
Score = 221 bits (562), Expect = 3e-58
Identities = 107/201 (53%), Positives = 134/201 (66%), Gaps = 6/201 (2%)
Frame = +3
Query: 345 HQAVALRVDSDQSAFYRCSIEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCK 404
HQAVA+R SD+S FYRCS +GFQDTLYAHS RQFYREC+I GTIDFIFGN A++ QNCK
Sbjct: 9 HQAVAMRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAASIFQNCK 188
Query: 405 IYTRAPLPLQKVTVTAQGRKSPHQSTGFTIQDSFILA-----TQPTYLGRPWKQYSRTVY 459
I R P+P Q T+TAQG+K P+Q+TG IQ S I T PTYLGRPWK +S T+
Sbjct: 189 IMPRQPMPNQFYTITAQGKKDPNQNTGIVIQKSTITPLESTYTAPTYLGRPWKDFSTTLI 368
Query: 460 INTYMSGMVQPRGWLEWFGDF-ALTTLWYGEYRNYGPGASLAGRVKWPGYHIMKDAATAS 518
+ + + ++P GW+ W + T++Y E++N GPG+ +A RVKW GY A
Sbjct: 369 MQSEIGSFLKPVGWVSWVANVDPPATIFYAEHQNSGPGSDVAQRVKWTGYKSTLTADDLG 548
Query: 519 YFTVQRFIHGDSWLPGTGVKF 539
FT+ FI G WLP T V F
Sbjct: 549 KFTLASFIQGPEWLPDTAVAF 611
>TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase ,
partial (29%)
Length = 934
Score = 219 bits (558), Expect = 9e-58
Identities = 114/235 (48%), Positives = 141/235 (59%), Gaps = 9/235 (3%)
Frame = +2
Query: 301 QTIITSNRNFMQGWTTFRTATVAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFY 360
+TIIT +NF G T +TAT A GFIA+ ++F NTAGP HQAVALR DQSAF
Sbjct: 11 KTIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSAFV 190
Query: 361 RCSIEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRAPLPLQKVTVTA 420
C I G+QDTLY + RQFYR C I GTIDFIFG ++Q+ I R P Q TVTA
Sbjct: 191 GCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSIIVVRKPNDNQFNTVTA 370
Query: 421 QGRKSPHQSTGFTIQDSFILATQ---------PTYLGRPWKQYSRTVYINTYMSGMVQPR 471
G + + TG IQD I+ +YLGRPWK+YSRTV + + + + P
Sbjct: 371 DGTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYSRTVVMESTLGDFIHPE 550
Query: 472 GWLEWFGDFALTTLWYGEYRNYGPGASLAGRVKWPGYHIMKDAATASYFTVQRFI 526
GW W G FAL TL+Y E+ N GPGA+ AGR+KW GY + A A+ FT F+
Sbjct: 551 GWFPWAGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFTAGEFL 715
>TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precursor
(Pectinesterase) , partial (59%)
Length = 1082
Score = 170 bits (430), Expect = 6e-43
Identities = 111/301 (36%), Positives = 165/301 (53%), Gaps = 10/301 (3%)
Frame = +3
Query: 44 CMDIENQNSCLQNI----HNELTKIGPPSPTSVLSAALRTTLNEAQGAIDNLTKFSTFSV 99
C + +SCL ++ + ++ P ++S ++T + + + TK +
Sbjct: 243 CEHALDASSCLAHVSEVSQSPISATKDPKLNILISLMTKSTSHIQEAMVK--TKAIKNRI 416
Query: 100 SN-REQIAIGDCKELVDFSVSELAWSLGEMRRIRAGDTSVQYEGNLEAWLSAALSNQDTC 158
+N RE+ A+ DC++L+D S+ + S+ + + D + ++ + AWLS L+N TC
Sbjct: 417 NNPREEAALSDCEQLMDLSIDRVWDSVMALTK----DNTDSHQ-DAHAWLSGVLTNHATC 581
Query: 159 LEGFEGTDRRL-----ESYISGSLTQVTQLISNVLSLYTQLHALPFRPPRNNTHKTSESL 213
L+G EG R L E IS S T + L+S VL+ P N E L
Sbjct: 582 LDGLEGPSRALMEAEIEDLISRSKTSLALLVS-VLA-----------PKGGNEQIIDEPL 725
Query: 214 DLDSEFPEWMTEGDQELLRSKPHRSRADAVVALDGSGHYRTITEAVNAAPSHSNRRYVIY 273
D D FP W+T D+ LL S A+ VVA DGSG ++T+ EAV +AP RYVIY
Sbjct: 726 DGD--FPSWVTRKDRRLLESSVGDVNANVVVAKDGSGRFKTVAEAVASAPDSGKTRYVIY 899
Query: 274 VKKGLYRENVDMKRKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATVAVSGKGFIARD 333
VKKG Y+EN+++ +K TN+ML GDG+ TIIT N N + G TTF++ATVA G GFIA+D
Sbjct: 900 VKKGTYKENIEIGKKKTNVMLTGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFIAQD 1079
Query: 334 M 334
+
Sbjct: 1080I 1082
>TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (43%)
Length = 564
Score = 135 bits (339), Expect = 2e-32
Identities = 61/100 (61%), Positives = 73/100 (73%)
Frame = +3
Query: 445 TYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVK 504
TYLGRPWK YSRTVY+ +Y+ V RGWLEW FAL TL+YGEY NYGPGA++ RV
Sbjct: 30 TYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGPGAAVGQRVN 209
Query: 505 WPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGLT 544
WPGY ++ A AS FTV +FI G +WLP TGV F +GL+
Sbjct: 210 WPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGLS 329
>CN825195
Length = 551
Score = 129 bits (323), Expect = 2e-30
Identities = 70/185 (37%), Positives = 108/185 (57%), Gaps = 6/185 (3%)
Frame = +2
Query: 152 LSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYT----QLHALPFRPPRNNTH 207
L+NQDTC +GF T ++ ++ +L +++L+SN L+++ +P + R
Sbjct: 17 LTNQDTCADGFADTSGDVKDQMAVNLKDLSELVSNCLAIFAGAGDDFSGVPIQNRRLLAM 196
Query: 208 KTSESLDLDSEFPEWMTEGDQELLRSKPHRSRADAVVALDGSGHYRTITEAVNAAPSHSN 267
+ D FP W+ D+ LL +AD VV+ DG+G +TI EA+ P + +
Sbjct: 197 R-------DDNFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGS 355
Query: 268 RRYVIYVKKGLYRE-NVDMKRKMTNIMLVGDGIGQTIITSNRNFMQG-WTTFRTATVAVS 325
RR++IYV+ G Y E N+ + RK TN+M++GDG G+T+IT +N M G TTF TA+ A S
Sbjct: 356 RRFIIYVRAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMYGLLTTFHTASFAAS 535
Query: 326 GKGFI 330
G GFI
Sbjct: 536 GAGFI 550
>AV765593
Length = 501
Score = 123 bits (309), Expect = 7e-29
Identities = 59/122 (48%), Positives = 77/122 (62%), Gaps = 9/122 (7%)
Frame = -1
Query: 428 QSTGFTIQDSFILATQP---------TYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFG 478
Q TG +I + I A TYLGRPWK+YSRTVY+ T M ++ GW W G
Sbjct: 501 QDTGTSIHNCTIRAADDLASSNGATATYLGRPWKEYSRTVYMQTSMDNVIDSAGWRAWDG 322
Query: 479 DFALTTLWYGEYRNYGPGASLAGRVKWPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVK 538
+FAL+TL+Y E+ N GPG++ GRV W GYH++ +A A+ FTV F+ GD WLP TGV
Sbjct: 321 EFALSTLYYAEFNNSGPGSNTNGRVTWQGYHVI-NATDAANFTVSNFLLGDDWLPQTGVS 145
Query: 539 FT 540
+T
Sbjct: 144 YT 139
>AI967495
Length = 390
Score = 123 bits (309), Expect = 7e-29
Identities = 62/121 (51%), Positives = 76/121 (62%), Gaps = 10/121 (8%)
Frame = +1
Query: 374 HSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRAPLPLQKVTVTAQGRKSPHQSTGFT 433
H+ RQFY++C+IYGT+D IFGN A V QNCKI+ + PL Q +TAQGR P Q+TG T
Sbjct: 19 HAQRQFYKQCQIYGTVDLIFGNAAVVFQNCKIFAKKPLDGQANMITAQGRDDPFQNTGIT 198
Query: 434 IQDSFILAT---------QPTYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFG-DFALT 483
I +S I A T LGRPW+QYSR V + T+M +V P GW W DFAL
Sbjct: 199 IHNSEIRAAPDLKPVVNKHNTSLGRPWQQYSRVVVLKTFMDTLVSPLGWSSWDDTDFALD 378
Query: 484 T 484
T
Sbjct: 379 T 381
>BP050971
Length = 477
Score = 115 bits (287), Expect = 2e-26
Identities = 55/104 (52%), Positives = 71/104 (67%), Gaps = 4/104 (3%)
Frame = -1
Query: 444 PTYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGDFALTT----LWYGEYRNYGPGASL 499
PT+LGRPWK +SRTV++ ++MS M+ P GWLEW TT L++GEY N GPG+ +
Sbjct: 444 PTFLGRPWKNFSRTVFMESFMSEMIHPEGWLEW---ETYTTYDDPLFFGEYPNKGPGSGV 274
Query: 500 AGRVKWPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGL 543
A RVKW GYH++ + + A FTV FI GD WLP GV + AGL
Sbjct: 273 ANRVKWRGYHVLNN-SPAMDFTVNPFIKGDLWLPSPGVSYHAGL 145
>AV426815
Length = 391
Score = 114 bits (285), Expect = 4e-26
Identities = 58/111 (52%), Positives = 79/111 (70%)
Frame = +3
Query: 219 FPEWMTEGDQELLRSKPHRSRADAVVALDGSGHYRTITEAVNAAPSHSNRRYVIYVKKGL 278
+PEW++ D+ LL++ +AD VVA DGSG+++T++ AV AAP S RYVI +K G+
Sbjct: 63 WPEWISAADRRLLQAGT--VKADVVVAADGSGNFKTVSAAVAAAPEKSKTRYVIKIKAGV 236
Query: 279 YRENVDMKRKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATVAVSGKGF 329
YRENV++ +K TNIM +GDG TIIT +RN + G TTF +ATVAV G F
Sbjct: 237 YRENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGSTTFHSATVAVVGGNF 389
>TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precursor
(Pectinesterase) (Pectin methylesterase) (Fragment) ,
partial (33%)
Length = 586
Score = 113 bits (283), Expect = 7e-26
Identities = 54/102 (52%), Positives = 66/102 (63%), Gaps = 3/102 (2%)
Frame = +3
Query: 445 TYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFG---DFALTTLWYGEYRNYGPGASLAG 501
TYLGRPWK+YSRT+ + + + + P GW EW DF L TL+YGEY N G GA
Sbjct: 18 TYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDF-LQTLYYGEYLNSGAGAGTGK 194
Query: 502 RVKWPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGL 543
RV WPG+H++K AA AS FTV + I G+ WL G GV F GL
Sbjct: 195 RVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 320
>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase (Fragment)
, partial (24%)
Length = 693
Score = 112 bits (280), Expect = 2e-25
Identities = 51/100 (51%), Positives = 66/100 (66%)
Frame = +2
Query: 444 PTYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRV 503
PTYLGRPWK+YSRTV++ + +S ++ P GW EW G+FAL TL Y EY+ GPGA + RV
Sbjct: 23 PTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQYPGPGAGTSKRV 202
Query: 504 KWPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGL 543
W G ++ A+ A FT FI G +WL TG F+ GL
Sbjct: 203 AWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 322
>TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isoform alpha
(Fragment) , partial (32%)
Length = 592
Score = 108 bits (271), Expect = 2e-24
Identities = 47/93 (50%), Positives = 63/93 (67%)
Frame = +1
Query: 452 KQYSRTVYINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVKWPGYHIM 511
K YSRTV++ +YM ++ P GWLEW FAL TL+YGEY+N GPG++ + RVKW GY ++
Sbjct: 1 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNPSARVKWGGYRVI 180
Query: 512 KDAATASYFTVQRFIHGDSWLPGTGVKFTAGLT 544
+ AS FTV +FI G WL TG+ F L+
Sbjct: 181 NSSTEASQFTVGQFIQGSDWLNSTGIPFYFNLS 279
>TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like protein,
partial (18%)
Length = 532
Score = 101 bits (252), Expect = 3e-22
Identities = 43/94 (45%), Positives = 63/94 (66%), Gaps = 4/94 (4%)
Frame = +3
Query: 446 YLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVKW 505
YLGRPWK+YSRTV+I++ + +V P+GW+ W G+FAL TL+YGE+ N GPG+ L+ RV W
Sbjct: 69 YLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALKTLYYGEFENSGPGSDLSLRVSW 248
Query: 506 ----PGYHIMKDAATASYFTVQRFIHGDSWLPGT 535
P H++ ++ + FI GD W+P +
Sbjct: 249 SSKVPAEHVLT-------YSAENFIQGDDWIPSS 329
>TC10625 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (32%)
Length = 538
Score = 73.6 bits (179), Expect(2) = 5e-22
Identities = 33/49 (67%), Positives = 37/49 (75%), Gaps = 3/49 (6%)
Frame = +2
Query: 464 MSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVKW---PGYH 509
MS V PRGWLEW GDFAL TL+YGEY NYGPGA++ RVKW P Y+
Sbjct: 5 MSDHVHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWTRVPDYY 151
Score = 47.8 bits (112), Expect(2) = 5e-22
Identities = 21/39 (53%), Positives = 25/39 (63%)
Frame = +3
Query: 506 PGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGLT 544
PGY I+ A FTV +FI G SWLP TGV + AGL+
Sbjct: 132 PGYRIITSTVEADRFTVAQFISGSSWLPSTGVAYLAGLS 248
>BP039243
Length = 462
Score = 97.8 bits (242), Expect = 4e-21
Identities = 49/103 (47%), Positives = 72/103 (69%)
Frame = -2
Query: 236 HRSRADAVVALDGSGHYRTITEAVNAAPSHSNRRYVIYVKKGLYRENVDMKRKMTNIMLV 295
+ ++ D VVA DG+G++ I EAV AAP+ R+VI++K G Y ENV++ RK TN+M V
Sbjct: 458 NETQFDLVVAKDGTGNFAPIGEAVAAAPNSRATRFVIHIKAGAYFENVEVIRKKTNVMFV 279
Query: 296 GDGIGQTIITSNRNFMQGWTTFRTATVAVSGKGFIARDMSFRN 338
GDGIG+T++ ++RN + GWTTF +ATV ++R +SF N
Sbjct: 278 GDGIGKTVVKAHRNVVDGWTTFPSATVG----ALLSRLISFFN 162
>BP039949
Length = 517
Score = 92.4 bits (228), Expect = 2e-19
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Frame = -3
Query: 401 QNCKIYTRAPLPLQKVT--VTAQGRKSPHQSTGFTIQDSFILATQPTYLGRPWKQYSRTV 458
+ C I++ A L V+ +TAQGR+S ++ TGF+ + IL T +LGR W +S V
Sbjct: 509 EGCTIHSIAKPDLDGVSGSITAQGRQSINEETGFSFVNCTILGTGNVWLGRAWGAFSTAV 330
Query: 459 YINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVKWPGYHIMKDAATAS 518
+ TYMS +V P GW +W T+++GEYR GPGA+ RV + +KD S
Sbjct: 329 FSKTYMSEVVAPEGWNDWRDPSRDQTVFFGEYRCLGPGANYTSRVSYAKQ--LKDYEANS 156
Query: 519 YFTVQRFIHGDSWL 532
Y + +I+G+ WL
Sbjct: 155 YMNIS-YINGNDWL 117
>BP031849
Length = 510
Score = 75.1 bits (183), Expect(2) = 5e-19
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = +2
Query: 482 LTTLWYGEYRNYGPGASLAGRVKWPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTA 541
L + +YGEY N G GAS RV WPG+H+++ A A+ FTV RF+ GD W+P +GV F++
Sbjct: 71 LYSXYYGEYMNIGSGASTQNRVNWPGFHVLRSAGEAAPFTVSRFLQGDRWIPASGVPFSS 250
Score = 36.2 bits (82), Expect(2) = 5e-19
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 464 MSGMVQPRGWLEWFGDFALTTL 485
+ G++ PRGW EW G+FAL+TL
Sbjct: 15 LDGLIHPRGWGEWRGNFALSTL 80
>TC17425 weakly similar to UP|Q9FM79 (Q9FM79) Similarity to pectin
methylesterase, partial (33%)
Length = 643
Score = 87.4 bits (215), Expect = 5e-18
Identities = 47/144 (32%), Positives = 71/144 (48%)
Frame = +1
Query: 389 IDFIFGNGAAVLQNCKIYTRAPLPLQKVTVTAQGRKSPHQSTGFTIQDSFILATQPTYLG 448
+DFI GN ++ C +Y+ A + A R+SP + TGF+ D I LG
Sbjct: 1 VDFICGNAKSLFHECILYSVAEF---WGAIAAHHRESPDEDTGFSFVDCTIKGNGSVLLG 171
Query: 449 RPWKQYSRTVYINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVKWPGY 508
R W +Y+ T+Y N M ++ P GW +W T +GEY+ G G++ GRV+W
Sbjct: 172 RAWGEYATTIYSNCDMDDIISPMGWSDWDVPSRQRTALFGEYQCSGKGSNRTGRVEWSKS 351
Query: 509 HIMKDAATASYFTVQRFIHGDSWL 532
++A F + +I GD WL
Sbjct: 352 LSSEEARP---FLGREYISGDEWL 414
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,976,859
Number of Sequences: 28460
Number of extensions: 118583
Number of successful extensions: 628
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of query: 545
length of database: 4,897,600
effective HSP length: 95
effective length of query: 450
effective length of database: 2,193,900
effective search space: 987255000
effective search space used: 987255000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0109.6