BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0108.16
(709 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780445 114 2e-33
AV407204 123 9e-29
TC19596 114 5e-26
AV780705 92 4e-19
AV767121 87 1e-17
BP085058 85 3e-17
BP076564 82 4e-16
BP060613 78 6e-15
BP056414 70 9e-13
AV407392 70 9e-13
BP068806 70 1e-12
AV780221 65 5e-11
BP067210 47 1e-10
BP081809 62 4e-10
BP036240 60 1e-09
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 58 5e-09
BP066140 58 5e-09
BP069214 57 1e-08
BP062688 56 2e-08
BP053073 56 2e-08
>AV780445
Length = 504
Score = 114 bits (284), Expect(2) = 2e-33
Identities = 48/102 (47%), Positives = 67/102 (65%)
Frame = +1
Query: 476 RSDHAVKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFW 535
R ++VK LAG+W +WKWR NMV + +PW++D AWRK+ H+HD+F+ F + D W
Sbjct: 202 RIRNSVKCLAGVW*VWKWRNNMVFEDSPWSVDEAWRKLGHEHDEFITFSDGD-AGDPGSW 378
Query: 536 LSVVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWV 577
LS W+PP +K+NVDGS R + MG GG +RD G W+
Sbjct: 379 LSSRWQPPRQGTVKLNVDGSGREQDRCMGAGGLIRDDQGKWL 504
Score = 46.2 bits (108), Expect(2) = 2e-33
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 429 RCSYIREDGIHSLRDCTHSRELWSRMGAGRWNNFWTLNLSDWIT 472
RC ED H LRDC HS+E+W R+GA W N + WI+
Sbjct: 65 RCPAPEEDI*HCLRDCPHSQEIWLRLGAWAWTNLGVGDHRSWIS 196
>AV407204
Length = 432
Score = 123 bits (309), Expect = 9e-29
Identities = 59/131 (45%), Positives = 86/131 (65%), Gaps = 2/131 (1%)
Frame = -2
Query: 576 WVTGFMAHYDNGNA--FIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSL 633
WV GF++ Y + F+AE LALRDGL++AW+ G R+L+C SDC EL+ +A S
Sbjct: 428 WVNGFISQYLEAASCSFLAEALALRDGLRLAWDNGTRKLVCNSDCKELIDAIADPSRASF 249
Query: 634 HSHGHILSEIRTMLRWSWRIDIAWIDREGNRVADWLAKRGASIALSEVQELVEPPSELQI 693
H+HG +L EI ++ +WR+++ W R+ N VAD LAKRG+ + ++ L P EL++
Sbjct: 248 HAHGWVLREIHALMTRNWRVELFWCCRDVNMVADCLAKRGSLLPVAGYSALATPSPELEV 69
Query: 694 LLLKDSLGVS* 704
LLLKD +G S*
Sbjct: 68 LLLKDIIGFS* 36
>TC19596
Length = 499
Score = 114 bits (285), Expect = 5e-26
Identities = 66/161 (40%), Positives = 94/161 (57%)
Frame = +1
Query: 549 KMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAHYDNGNAFIAEMLALRDGLKIAWEQG 608
+M+ DG+F+ D+ MG GG +RD+ G+W++GF A G+A AE+ AL+ GL + W
Sbjct: 4 RMDSDGAFKHDDDRMGMGGIVRDAHGAWISGFYAGSLGGDALRAEIAALKHGLTLLWNAH 183
Query: 609 CRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIAWIDREGNRVADW 668
RR CE DCL++V L + D H+ L +IR +L W + +A++ RE N AD
Sbjct: 184 VRRATCEVDCLDIVEALEN-DRYQFHALASELLDIRLLLDRDWTVTLAYVPREANAAADC 360
Query: 669 LAKRGASIALSEVQELVEPPSELQILLLKDSLGVS*LAFLF 709
LA GAS+ L + L PP ELQ +L +D L L FLF
Sbjct: 361 LAGLGASL-LCPLTCLESPPQELQPILARDLLA---L*FLF 471
>AV780705
Length = 524
Score = 91.7 bits (226), Expect = 4e-19
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Frame = -2
Query: 119 IPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLAKSVIAAM 178
+P+ +D G YLG P GR ++ E + K+ WK LLN AG+ L K++I A+
Sbjct: 511 MPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAI 332
Query: 179 PTYTMQVFWLPRSIIHHIDRAMRSFIW-SKGSGQRGWNLVNWSTVVRDKSHGGLGMKDMS 237
P+Y M + P++ + + + F W S+G G + + K GG+G +D+
Sbjct: 331 PSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDLR 152
Query: 238 DHNTALLGKAVWLLLKNSNKLWVQVMQHKY 267
N A L + W +L N LWV+VM+ Y
Sbjct: 151 TQNLAFLARQAWRVLTNPEALWVRVMKSLY 62
>AV767121
Length = 525
Score = 86.7 bits (213), Expect = 1e-17
Identities = 54/175 (30%), Positives = 80/175 (44%), Gaps = 6/175 (3%)
Frame = +2
Query: 154 MAAWKTNLLNLAGRACLAKSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRG 213
++ WK ++ GR L +SV+ A+P + + F LP + R MR+F+W +
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 214 WNLVNWSTVVRDKSHGGLGMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTI 273
V W+ V + K GGLG+KD+ N ALLGK W L + LW +V++
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIE--------- 334
Query: 274 LNAPHRASSSAVWKGILR-----ARDRLRGGFKFRLGTGN-SSIWYNDWSGHGNL 322
H + S+ W IL A G K +G G+ + W DW G G L
Sbjct: 335 AQPDHYSCGSSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSGLL 499
>BP085058
Length = 452
Score = 85.1 bits (209), Expect = 3e-17
Identities = 47/127 (37%), Positives = 70/127 (55%)
Frame = +2
Query: 105 VHPSIRDDIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNL 164
++ ++RD + I IP +++GKY+ FP+ G V + F F L+ + ++A K LLN
Sbjct: 68 ININLRDRMVSITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNK 247
Query: 165 AGRACLAKSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVR 224
R LAK V++A+ Y MQ+ WLP+SI I +R F+W G LV W T+
Sbjct: 248 PARLTLAKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVW---ENVNGIPLVAWETIQS 418
Query: 225 DKSHGGL 231
KS GL
Sbjct: 419 RKSMVGL 439
>BP076564
Length = 371
Score = 81.6 bits (200), Expect = 4e-16
Identities = 37/98 (37%), Positives = 57/98 (57%)
Frame = +2
Query: 399 EFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDGIHSLRDCTHSRELWSRMGAGR 458
+F V L LH ALP+N++R C +A + C RCS +D +H L+DC HSRE+W+R+G
Sbjct: 77 KFMVGLGLHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVWNRLGCSS 256
Query: 459 WNNFWTLNLSDWITLHARSDHAVKFLAGLWGIWKWRCN 496
+ F + + W+ + + K + LW IW+ R N
Sbjct: 257 FGGFLSSDGWSWLLSIMKQPNVEKLIYILWWIWR*RNN 370
>BP060613
Length = 378
Score = 77.8 bits (190), Expect = 6e-15
Identities = 37/106 (34%), Positives = 53/106 (49%)
Frame = +1
Query: 204 IWSKGSGQRGWNLVNWSTVVRDKSHGGLGMKDMSDHNTALLGKAVWLLLKNSNKLWVQVM 263
+W G RG + W + K GGLG KD N ALL K W +L N + LWVQ++
Sbjct: 43 VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 264 QHKYLRDHTILNAPHRASSSAVWKGILRARDRLRGGFKFRLGTGNS 309
+ Y H L R +S VW +L R+ L +++LG+G +
Sbjct: 223 KALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGET 360
>BP056414
Length = 606
Score = 70.5 bits (171), Expect = 9e-13
Identities = 51/166 (30%), Positives = 77/166 (45%), Gaps = 3/166 (1%)
Frame = -3
Query: 540 WKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGF---MAHYDNGNAFIAEMLA 596
W PP K+NVDG+ D GG +RD++GSW GF + AF E++A
Sbjct: 562 WTRPPEGWFKVNVDGALSGDL-QASCGGVVRDAAGSWSKGFARSLGVLRWHXAFFVELMA 386
Query: 597 LRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIA 656
++ + ++I ESD ++V L + + S H +G I +I+ + I I
Sbjct: 385 VQTAVDFIMSWDIPQVIIESDSQQVVELLQNFNASSPHQYGEIAWDIQQKISVHGSIVIT 206
Query: 657 WIDREGNRVADWLAKRGASIALSEVQELVEPPSELQILLLKDSLGV 702
RE N +AD+LAK G S+ P E LL KD + +
Sbjct: 205 STPREANFLADYLAKVGLSLPFG-THSFDAPFGECHSLLQKDLMSI 71
>AV407392
Length = 407
Score = 70.5 bits (171), Expect = 9e-13
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +1
Query: 604 AWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIAWIDREGN 663
A ++G RL+CESDCL+LV L ++ V H H IL+EI+ M+ W+WR+++A EGN
Sbjct: 4 AGKRGDCRLLCESDCLDLVSILVDIESVRAHVHCSILNEIQGMICWNWRVELA---HEGN 174
Query: 664 RVADWLAK 671
VADWLA+
Sbjct: 175 VVADWLAR 198
>BP068806
Length = 418
Score = 70.1 bits (170), Expect = 1e-12
Identities = 33/80 (41%), Positives = 44/80 (54%)
Frame = +3
Query: 401 FVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDGIHSLRDCTHSRELWSRMGAGRWN 460
+VW + A+ VNS RF C LA S A RC + ED H LRDC +R++W R+ A W
Sbjct: 171 WVWFIMQGAIQVNSFRFRCKLATSPAGPRCQHQFEDIWHCLRDCRIARDVWVRLNALGWP 350
Query: 461 NFWTLNLSDWITLHARSDHA 480
F+ N W+ A+ HA
Sbjct: 351 GFFVSNAQAWVKSQAQGPHA 410
>AV780221
Length = 461
Score = 64.7 bits (156), Expect = 5e-11
Identities = 49/159 (30%), Positives = 76/159 (46%), Gaps = 9/159 (5%)
Frame = +3
Query: 169 CLAKSVIAAMPTYTMQVFWLPRSIIH-HIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKS 227
CL +SV+ A+P + + F LP + +++ F + G + V WSTV R K
Sbjct: 6 CLIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKD 185
Query: 228 HGGLGMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWK 287
GGLG++++ N ALLGK W +LK + LW +V+ KY NA +++SS W
Sbjct: 186 EGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY------KNAIPQSASS--WW 341
Query: 288 GILRAR-------DRLRGGFKFRLGTGNS-SIWYNDWSG 318
L + ++ G R+G G W +W G
Sbjct: 342 NDLHSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWLG 458
>BP067210
Length = 473
Score = 47.0 bits (110), Expect(2) = 1e-10
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = -2
Query: 637 GHILSEIRTMLRWSWRIDIAWIDREGNRVADWLAKRGASIALSEVQELVEPPSELQILLL 696
G ++S IR ML W+WR+ I IDRE +RVAD AK+ A + + L P S + L
Sbjct: 277 GELISSIREMLAWNWRVHIIHIDRERSRVADAFAKQVARMR-CPLHVLKAPHSNVISFLC 101
Query: 697 KDSL 700
D+L
Sbjct: 100 HDTL 89
Score = 36.2 bits (82), Expect(2) = 1e-10
Identities = 21/49 (42%), Positives = 27/49 (54%)
Frame = -1
Query: 577 VTGFMAHYDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNL 625
++G Y GNAF E+L +R GLK A E + +IC SD E V L
Sbjct: 458 LSGIAYSYGXGNAF*PELLVVRVGLKHACELHFQDIICNSDYSEAVELL 312
>BP081809
Length = 299
Score = 61.6 bits (148), Expect = 4e-10
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = -1
Query: 639 ILSEIRTMLRWSWRIDIAWIDREGNRVADWLAKRGASIALSEVQELVEPPSELQILLLKD 698
+L EI +L SWR + WI R+GN D+LA+RG + S V+EL PP +L LLLKD
Sbjct: 296 VLGEIHELLNRSWRCIMNWISRDGNGPTDYLARRGGFSSSSGVRELDAPPPKLDHLLLKD 117
Query: 699 SLGVS*LAFLF 709
L + * LF
Sbjct: 116 KLTLR*FFLLF 84
>BP036240
Length = 567
Score = 60.1 bits (144), Expect = 1e-09
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Frame = -3
Query: 540 WKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGF---MAHYDNGNAFIAEMLA 596
W P K +VDG+ D L GG LRDS W+ GF M N F+ E+ A
Sbjct: 562 WTAPDEGWTKFDVDGALSRDL-LASCGGVLRDSRRHWIKGFCRNMGDLTYHNVFLVELSA 386
Query: 597 LRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIA 656
++ ++IA + +I ESD LE + L+S + V H G + + I M R I
Sbjct: 385 IQSAVEIALSMDLQHVIVESDALEAIHLLSSEN-VHAHPFGSLAASILRMQRDHGSIVFQ 209
Query: 657 WIDREGN 663
RE N
Sbjct: 208 HTPREAN 188
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 58.2 bits (139), Expect = 5e-09
Identities = 44/171 (25%), Positives = 76/171 (43%), Gaps = 11/171 (6%)
Frame = -3
Query: 463 WTLNLSDWITLHA--RSDHAVKFLAGLWGIWKWRCNMVMDTA-PWTIDTAWRKIAHDHDD 519
W + S +I H+ + LW IWK R ++ P ++T ++ I H D
Sbjct: 1056 WFVERSQFILNHSLNHEEDLATLSFTLWAIWKNRNRVIFQLEEPNPVNTIFQ-IRHMQQD 880
Query: 520 FLKFMQPQLSHDDSFWLSV--------VWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRD 571
Q + + ++ W+PPP K+N D S+++ G +RD
Sbjct: 879 ANLMSTSQSNKQTTRERNINVTSARDRSWRPPPLGVYKLNSDASWKAPSPSCTVGVVIRD 700
Query: 572 SSGSWVTGFMAHYDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELV 622
+ G ++G + + ++E LALR+GL +A G R++ ESDC L+
Sbjct: 699 NLGLLISGTASRPLAPSPIVSEALALREGLILARSLGLDRILSESDCQPLI 547
>BP066140
Length = 320
Score = 58.2 bits (139), Expect = 5e-09
Identities = 33/89 (37%), Positives = 49/89 (54%)
Frame = -2
Query: 600 GLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIAWID 659
GL +AWE+G R+L+C SDC ++V+ L + L S L+E R+++ W +
Sbjct: 316 GLSLAWERGIRKLLCISDCEDVVKALTGLGSFHLDSWAAYLAEARSLIHPEWECLLLPHH 137
Query: 660 REGNRVADWLAKRGASIALSEVQELVEPP 688
RE N+ AD LAK G S+ + L PP
Sbjct: 136 RERNKPADALAKLGMSLR-RDFPALENPP 53
>BP069214
Length = 545
Score = 57.0 bits (136), Expect = 1e-08
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = -2
Query: 593 EMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWR 652
E+LA+ GL + W++G R++IC+SD E + + V H + ++ I+ +L W
Sbjct: 394 ELLAMWHGLDLVWDRGFRQVICQSDSTEALALVLGVP-PPRHRYAALIWSIKDLLSREWE 218
Query: 653 IDIAWIDREGNRVADWLAKRGA 674
+ + + REGN AD+LAK GA
Sbjct: 217 VSMTHMLREGNSCADFLAKYGA 152
>BP062688
Length = 536
Score = 56.2 bits (134), Expect = 2e-08
Identities = 29/77 (37%), Positives = 41/77 (52%)
Frame = -1
Query: 594 MLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRI 653
+++ GL WE G ++C DCLEL L S V + H ++ IR +L SW +
Sbjct: 398 IMSFHKGLLHTWELGFLHVVCYVDCLELQEVLTSTRDVQTYWHRDVIEMIRAVLARSWNV 219
Query: 654 DIAWIDREGNRVADWLA 670
I + R+GN VAD LA
Sbjct: 218 TINHVTRDGNAVADALA 168
>BP053073
Length = 456
Score = 55.8 bits (133), Expect = 2e-08
Identities = 34/106 (32%), Positives = 57/106 (53%)
Frame = -2
Query: 593 EMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWR 652
E+L + GL++ W +G RR++ +D +L +L + H + I+ I +LR+ W+
Sbjct: 416 ELLXMLYGLQL*WSKGVRRMLVFTDS-QLALSLVQLGCDRFHQYAAIVGMIHDLLRFDWQ 240
Query: 653 IDIAWIDREGNRVADWLAKRGASIALSEVQELVEPPSELQILLLKD 698
++ I REGN V D LAK G + +L+E P + + LL D
Sbjct: 239 VNFRLILREGNAVVDLLAKDGTRDSCR--LKLLEDPLQAALPLLAD 108
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.137 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,721,825
Number of Sequences: 28460
Number of extensions: 289789
Number of successful extensions: 1874
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 1847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of query: 709
length of database: 4,897,600
effective HSP length: 97
effective length of query: 612
effective length of database: 2,136,980
effective search space: 1307831760
effective search space used: 1307831760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0108.16