BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0108.1
(915 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV418814 273 1e-73
AV409108 216 1e-56
TC16249 similar to UP|O63067 (O63067) Aspartokinase-homoserine d... 196 1e-50
TC9572 homologue to UP|O63067 (O63067) Aspartokinase-homoserine ... 187 8e-48
TC17748 similar to UP|O63067 (O63067) Aspartokinase-homoserine d... 132 2e-31
BP056396 90 2e-24
TC14781 homologue to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional... 98 5e-21
TC10849 similar to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional a... 80 2e-15
AV779391 75 6e-14
BP054054 60 3e-11
TC17093 weakly similar to UP|PYRH_LACPL (Q88VJ6) Uridylate kinas... 40 0.002
BP051910 33 0.27
AV409888 32 0.45
TC8135 similar to UP|GUN4_ARATH (Q9LX31) Tetrapyrrole-binding pr... 31 1.0
TC12043 weakly similar to UP|Q9SND9 (Q9SND9) Anthranilate N-hydr... 30 1.7
BI420177 30 2.2
TC13075 similar to UP|O23442 (O23442) Dynein light chain like pr... 30 2.2
TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprote... 30 2.2
AW719453 29 2.9
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 28 5.0
>AV418814
Length = 420
Score = 273 bits (697), Expect = 1e-73
Identities = 139/139 (100%), Positives = 139/139 (100%)
Frame = +3
Query: 496 KMASTPGVSATLFNALAKANINVRAIAQGCSEYNITVVLKREDCVKALRAVHSRFYLSRT 555
KMASTPGVSATLFNALAKANINVRAIAQGCSEYNITVVLKREDCVKALRAVHSRFYLSRT
Sbjct: 3 KMASTPGVSATLFNALAKANINVRAIAQGCSEYNITVVLKREDCVKALRAVHSRFYLSRT 182
Query: 556 TIAMGIIGPGLIGSTLLDQLRDQASILKEEFNIDLRVMGILGSKSMLLSDWGIDLARWRE 615
TIAMGIIGPGLIGSTLLDQLRDQASILKEEFNIDLRVMGILGSKSMLLSDWGIDLARWRE
Sbjct: 183 TIAMGIIGPGLIGSTLLDQLRDQASILKEEFNIDLRVMGILGSKSMLLSDWGIDLARWRE 362
Query: 616 LRDESGEVANLEKFVQHVH 634
LRDESGEVANLEKFVQHVH
Sbjct: 363 LRDESGEVANLEKFVQHVH 419
>AV409108
Length = 359
Score = 216 bits (551), Expect = 1e-56
Identities = 107/107 (100%), Positives = 107/107 (100%)
Frame = +3
Query: 1 MASLSASSLYHFSTISPSNNTPDITKISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPST 60
MASLSASSLYHFSTISPSNNTPDITKISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPST
Sbjct: 39 MASLSASSLYHFSTISPSNNTPDITKISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPST 218
Query: 61 KISASLTDVSPSVLVEEQQLQKGETWSVHKFGGTCMGSSQRIKNVGD 107
KISASLTDVSPSVLVEEQQLQKGETWSVHKFGGTCMGSSQRIKNVGD
Sbjct: 219 KISASLTDVSPSVLVEEQQLQKGETWSVHKFGGTCMGSSQRIKNVGD 359
>TC16249 similar to UP|O63067 (O63067) Aspartokinase-homoserine
dehydrogenase (HDH) (Aspartate kinase) , partial (13%)
Length = 590
Score = 196 bits (498), Expect = 1e-50
Identities = 96/115 (83%), Positives = 109/115 (94%)
Frame = +3
Query: 801 PLQACASAQEFMQRLPEFDQMFAKKLEEAENAGEVLRYVGVVDVTSKKGVVELRRYKKDH 860
PL+ CASAQ+F+++LP+FD+ KK E+AE+AGEVLRYVGVVDV ++KGVVELRRYKKDH
Sbjct: 3 PLRVCASAQDFIRQLPKFDKELTKKQEDAESAGEVLRYVGVVDVRNEKGVVELRRYKKDH 182
Query: 861 PFAQLSGSDNIIAFTTRRYKDQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 915
PFAQLSGSDNIIAFTTRRY++QPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Sbjct: 183 PFAQLSGSDNIIAFTTRRYQNQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 347
>TC9572 homologue to UP|O63067 (O63067) Aspartokinase-homoserine
dehydrogenase (HDH) (Aspartate kinase) , partial (11%)
Length = 510
Score = 187 bits (474), Expect = 8e-48
Identities = 95/98 (96%), Positives = 95/98 (96%)
Frame = +1
Query: 818 FDQMFAKKLEEAENAGEVLRYVGVVDVTSKKGVVELRRYKKDHPFAQLSGSDNIIAFTTR 877
FDQMFAK LEEAE AGEVLRYVGVVDVTSKKGVVELRRYKKDHPFA LSGSDNIIAFTTR
Sbjct: 1 FDQMFAKTLEEAEYAGEVLRYVGVVDVTSKKGVVELRRYKKDHPFAPLSGSDNIIAFTTR 180
Query: 878 RYKDQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 915
RYKDQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Sbjct: 181 RYKDQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 294
>TC17748 similar to UP|O63067 (O63067) Aspartokinase-homoserine
dehydrogenase (HDH) (Aspartate kinase) , partial (8%)
Length = 658
Score = 132 bits (332), Expect = 2e-31
Identities = 66/84 (78%), Positives = 74/84 (87%)
Frame = +2
Query: 330 LKTLSYQEAWEMSYFGANVLHPRTIIPVMQYGIPILIRNIFNLSAPGTKICHPSVNDNED 389
L+ L+++ SYFGANVLHP TII VMQYGIPILIRNIFNLSA GTKI HPSVND+ED
Sbjct: 56 LRRLTFKLPAVQSYFGANVLHPHTIIHVMQYGIPILIRNIFNLSASGTKIRHPSVNDSED 235
Query: 390 MMNVKNFVKGFATIDNLALINVEG 413
MMN+K+FV+GFATIDNLALINVEG
Sbjct: 236 MMNLKSFVEGFATIDNLALINVEG 307
>BP056396
Length = 368
Score = 90.1 bits (222), Expect(2) = 2e-24
Identities = 43/55 (78%), Positives = 49/55 (88%)
Frame = -2
Query: 843 DVTSKKGVVELRRYKKDHPFAQLSGSDNIIAFTTRRYKDQPLIVRGPGAGAQVTA 897
DV ++KGVVELRRY+KDHPFA LSGSD IIAF TRRY++ PLIVRGPGAGA VT+
Sbjct: 367 DVRNEKGVVELRRYQKDHPFAPLSGSDKIIAFPTRRYQNPPLIVRGPGAGAPVTS 203
Score = 40.4 bits (93), Expect(2) = 2e-24
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -3
Query: 894 QVTAGGIFSDILRLASYLGAPS 915
Q AGGIFSD+LRLASYLGAPS
Sbjct: 213 QSPAGGIFSDLLRLASYLGAPS 148
>TC14781 homologue to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional
aspartokinase (Aspartate kinase) , partial (40%)
Length = 1084
Score = 98.2 bits (243), Expect = 5e-21
Identities = 62/222 (27%), Positives = 120/222 (53%), Gaps = 1/222 (0%)
Frame = +3
Query: 333 LSYQEAWEMSYFGANVLHPRTIIPVMQYGIPILIRNIFNLSAPGTKICHPSVNDNEDMMN 392
L++ EA E++YFGA VLHP+++ P + IP+ ++N +N APGT I + + DM
Sbjct: 36 LTFDEAAELAYFGAQVLHPQSMRPAGERDIPVRVKNFYNPKAPGTLI-----SKSRDMS- 197
Query: 393 VKNFVKGFATIDNLALINVEGTGMAGVPGTASAIFGAVKDVGANVIMISQASSEHSICFA 452
K + N+ ++++ T M G G + +F +D+G +V ++ A+SE S+
Sbjct: 198 -KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDVV--ATSEVSVSLT 368
Query: 453 VPEKEVKAVAEALQSRFRHALDN-GRLSQVAIIPNCSILAAVGQKMASTPGVSATLFNAL 511
+ ++ + +Q H ++ +++ V ++ N SI++ +G S+ + F L
Sbjct: 369 LDPSKL-WTRDLIQQELDHVVEELEKIAVVNLLQNXSIISLIGNVQRSSL-ILEKAFRVL 542
Query: 512 AKANINVRAIAQGCSEYNITVVLKREDCVKALRAVHSRFYLS 553
+ V+ I+QG S+ NI++V+ + + +RA+HS F+ S
Sbjct: 543 RSLGVTVQMISQGASKVNISLVVNDNEAEQCVRALHSAFFES 668
>TC10849 similar to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional
aspartokinase (Aspartate kinase) , partial (43%)
Length = 902
Score = 79.7 bits (195), Expect = 2e-15
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 4/216 (1%)
Frame = +1
Query: 88 VHKFGGTCMGSSQRIKNVGDIVLEDDSERKLVVVSAMSKVTDMMYELINKAQSRDESYVS 147
V KFGG+ + S++R+K + +VL ER +VV+SAM K T+ + KA S S S
Sbjct: 244 VMKFGGSSVASAERMKEIASLVLSFPEERPIVVLSAMGKTTNKLLLAGEKAVSCGVSNAS 423
Query: 148 SLDAVLEKHSLTAHDLLDGDGLATFLSQLHHDISNLKAMLRAIYIAGHATESFTDFVVGH 207
++D E + L D L S + ++ L+ +L+ I + T+ D++V
Sbjct: 424 TID---ELSFIKDLHLRTVDQLGLDRSVIAKNLEELEQLLKGIAMMRELTKRTQDYLVSF 594
Query: 208 GELWSAQMLSLVIRKNGADCKWMDTRDVLIVNP---TSSNQVDPDYLESEKRLETWFSLN 264
GE S ++ + + K G + D ++ + T+++ ++ Y KRL + +
Sbjct: 595 GECMSTRIFAAYLNKTGVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHGDWLSD 774
Query: 265 PCKVIIATGFIASTPQKIP-TTLKRDGSDFSAAIMG 299
P + I TGF+ + TTL R GSD +A +G
Sbjct: 775 PA-IPIVTGFLGKARKSCAVTTLGRGGSDLTATTIG 879
>AV779391
Length = 498
Score = 74.7 bits (182), Expect = 6e-14
Identities = 47/153 (30%), Positives = 80/153 (51%), Gaps = 4/153 (2%)
Frame = +2
Query: 202 DFVVGHGELWSAQMLSLVIRKNGADCKWMDTRDVLIVNP---TSSNQVDPDYLESEKRLE 258
D++V GE S ++ + + K G + D ++ + T+++ ++ Y KRL
Sbjct: 41 DYLVSFGECMSTRIFAAYLNKLGVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLH 220
Query: 259 TWFSLNPCKVIIATGFIASTPQKIP-TTLKRDGSDFSAAIMGALFRARQVTIWTDVDGVY 317
+ + +P II TGF+ + T+L R GSD +A +G ++ +W DVDGV
Sbjct: 221 SDWVSDPAIPII-TGFLGKARKSCAVTSLGRGGSDLTATTIGKALG*PEIQVWKDVDGVL 397
Query: 318 SADPRKVSEAVILKTLSYQEAWEMSYFGANVLH 350
+ DP +A + L++ EA E++YFGA VLH
Sbjct: 398 TCDPYICPQAEPVPYLTFDEAAELAYFGAQVLH 496
>BP054054
Length = 360
Score = 60.1 bits (144), Expect(2) = 3e-11
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = -3
Query: 883 PLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 915
PLIVRGPGA A VT GGIFSD+LRLASYLGAPS
Sbjct: 295 PLIVRGPGARAPVTTGGIFSDLLRLASYLGAPS 197
Score = 25.4 bits (54), Expect(2) = 3e-11
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = -2
Query: 869 DNIIAFTTRRYKD 881
D +IAFTTRRY+D
Sbjct: 338 DYLIAFTTRRYQD 300
>TC17093 weakly similar to UP|PYRH_LACPL (Q88VJ6) Uridylate kinase (UK)
(Uridine monophosphate kinase) (UMP kinase) , partial
(22%)
Length = 594
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/66 (36%), Positives = 37/66 (55%)
Frame = +3
Query: 311 TDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMQYGIPILIRNIF 370
T+VDGV+ DP++ EA +L TL+YQE +V+ I + IP++ +F
Sbjct: 9 TNVDGVFDDDPKRNPEARLLDTLTYQEVITKD---LSVMDLTAITLCQENNIPVV---VF 170
Query: 371 NLSAPG 376
NL+ PG
Sbjct: 171 NLNKPG 188
>BP051910
Length = 429
Score = 32.7 bits (73), Expect = 0.27
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = -3
Query: 3 SLSASSLYHFSTISPSNNTPDITKISQCQCLPFLPSHRSHSL 44
+L S YH S + TPDI +CQ +P+ RSH L
Sbjct: 307 ALEKSGKYHVEAWS*KS*TPDIFDAKRCQMIPYYSFSRSHML 182
>AV409888
Length = 426
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/77 (24%), Positives = 38/77 (48%)
Frame = +2
Query: 12 FSTISPSNNTPDITKISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPSTKISASLTDVSP 71
FST + + + +Q LPFL SH S +++ L L R N + I S+++ +
Sbjct: 119 FSTTTTTKKSSPFFSSNQLHTLPFLSSH-SIAVKPTLRLASRNNNTALRPIKCSVSEATE 295
Query: 72 SVLVEEQQLQKGETWSV 88
++Q ++G+ ++
Sbjct: 296 PKTEKKQFTRRGDVRNI 346
>TC8135 similar to UP|GUN4_ARATH (Q9LX31) Tetrapyrrole-binding protein,
chloroplast precursor (Genomes uncoulped 4), partial
(51%)
Length = 1213
Score = 30.8 bits (68), Expect = 1.0
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 20/168 (11%)
Frame = +2
Query: 10 YHFSTISPSNNTPDITKISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPSTKISASL--- 66
Y F SP D K S+ Q L + ++ HS+ +L ++SP + +SASL
Sbjct: 47 YTFKPFSPF----DFHKQSKLQPLN*MATNYLHSIHHSLIKHHHHSESPPSTLSASLFLK 214
Query: 67 -TDVSPSVLVEEQQL------QKGETWSVHKFGGTCMGSSQRIKNVGDIVLE-------- 111
T+ S + L T+SV + + S+ D++ E
Sbjct: 215 PTNTKTSSITLSNSLLPSPTSNSSVTFSVSQTTSSTTPSTTSKSTSLDLLRELLSARNFR 394
Query: 112 --DDSERKLVVVSAMSKVTDMMYELINKAQSRDESYVSSLDAVLEKHS 157
DD R+L++ A Y ++ Q E+ + ++D + +HS
Sbjct: 395 EADDETRRLLIALAGEPAIKRGYVFFSEVQFISETDLKAIDELWREHS 538
>TC12043 weakly similar to UP|Q9SND9 (Q9SND9) Anthranilate
N-hydroxycinnamoyl/benzoyltransferase-like protein,
partial (11%)
Length = 421
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 666 HVVTPNKKANSGPL-DQYLKLRALQRQSYTHYFY 698
H P K N G L DQY L+ LQ Q + HY Y
Sbjct: 241 HFSWPPKSQNEGTLQDQYYLLQPLQMQ*FYHYIY 140
>BI420177
Length = 444
Score = 29.6 bits (65), Expect = 2.2
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 747 SEVVQEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLEL-SNIPVESLVPEPLQAC 805
S+ E + G +EPDP DDLS + A + K EL S +PL +
Sbjct: 204 SDTQTEPQNDGRSEPDPSDDLSSEEAASD----GSKKSPKRELDEEQQPASKKQKPLSSL 371
Query: 806 ASAQEFMQRLPEFD 819
++A + LPE D
Sbjct: 372 SAANQDSPALPEGD 413
>TC13075 similar to UP|O23442 (O23442) Dynein light chain like protein,
partial (86%)
Length = 514
Score = 29.6 bits (65), Expect = 2.2
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = +3
Query: 10 YHFSTISPSNNTPDITKISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPSTKISASLTDV 69
+HF P TP I + QC P P HR H K LLP +S S + SLT
Sbjct: 84 HHFLRRDP---TPKI----ESQCSPLYPHHRRH---KHHLLLPHPRKSSSRVLICSLT-C 230
Query: 70 SPSVLVEEQQLQKGETW 86
L+ + +G W
Sbjct: 231 RKRPLISPSRHLRGSMW 281
>TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1602
Score = 29.6 bits (65), Expect = 2.2
Identities = 17/39 (43%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
Frame = -2
Query: 875 TTRRYKDQPLIVRGPGAGAQVTAGGI-FSDILRLASYLG 912
T R+ D+ L+VRG GAG + A G+ F LR Y G
Sbjct: 377 TERKVSDEDLVVRGEGAGLCIVAEGVLFLVELRGDGYTG 261
>AW719453
Length = 546
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/35 (45%), Positives = 19/35 (53%)
Frame = +3
Query: 36 LPSHRSHSLRKALSLLPRGNQSPSTKISASLTDVS 70
LP H HS SLLP SP+T SAS+T +
Sbjct: 258 LPDHNEHSDHSTHSLLP----SPTTSTSASITSTT 350
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +2
Query: 72 SVLVEEQQLQKGETWSVHKFGGTCMGSSQRIKNVGD 107
+VL E +Q + GE WS GG+C G+ GD
Sbjct: 683 AVLCEAEQGEGGERWSGEAAGGSCGGARDWSGGEGD 790
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,609,571
Number of Sequences: 28460
Number of extensions: 168584
Number of successful extensions: 861
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of query: 915
length of database: 4,897,600
effective HSP length: 99
effective length of query: 816
effective length of database: 2,080,060
effective search space: 1697328960
effective search space used: 1697328960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0108.1