BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.9
(458 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP039231 241 2e-64
AV428808 187 2e-54
TC10770 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro... 55 3e-08
TC9447 similar to UP|Q7RLJ4 (Q7RLJ4) Predicted membrane protein,... 28 2.4
TC14367 similar to UP|Q9ZRV1 (Q9ZRV1) Xyloglucan endotransglycos... 28 4.1
TC19832 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {Ar... 28 4.1
TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein... 27 5.4
TC16016 27 7.0
TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, part... 27 7.0
TC9131 weakly similar to UP|O80986 (O80986) At2g26110 protein, p... 27 9.2
>BP039231
Length = 567
Score = 241 bits (615), Expect = 2e-64
Identities = 116/156 (74%), Positives = 133/156 (84%), Gaps = 3/156 (1%)
Frame = +1
Query: 12 EAGMFSVPQTICSVLCCMCGIPMQPNAANMCVKCLSSQEDITEGLQKHINIFHCPQCESY 71
EAGMF+V +T+ SVLCC CGIPMQPNAANMCVKCL S+ DITEGL K + + HCP+CESY
Sbjct: 103 EAGMFTVHRTVGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPECESY 282
Query: 72 FQHPKTWIKHLKPESDELLKFCLKMMKK---TNKVRMVDARFIWTEPHSKRIKINVKVQK 128
Q P+TWIK L+ ES ELL FCLK ++K ++KVRMV A FIWTEPHSKRIK+NVKVQK
Sbjct: 283 LQPPRTWIK-LQLESKELLTFCLKKLQKNMSSSKVRMVHAEFIWTEPHSKRIKVNVKVQK 459
Query: 129 EVLNGVILEQSYLVEYVQLEHLCDSCTRVAANPDQW 164
EVLNG ILEQSYLVEYVQ EHLC+SC++VAANPDQW
Sbjct: 460 EVLNGAILEQSYLVEYVQQEHLCESCSKVAANPDQW 567
>AV428808
Length = 411
Score = 187 bits (476), Expect(2) = 2e-54
Identities = 93/107 (86%), Positives = 100/107 (92%)
Frame = +1
Query: 235 NKQLVSHDTKSNNYNYRYTFSVEISPICREDLICLPHHVALSLGNLGPLVICTKVTNSIV 294
+KQLVSHDTKSN YNY++TFSVEISPICREDLICLP VALSLGNLGP+VICTKVTNSI
Sbjct: 19 DKQLVSHDTKSNEYNYKHTFSVEISPICREDLICLPPKVALSLGNLGPIVICTKVTNSIA 198
Query: 295 LLDPFTLRHCFLDASQYWRASFKSLLTSRQLVEYVVLDVEEVVPSEV 341
LLDPFTLR+CFLDA QYWR+SFKSLLTSRQLVEY+VLDV EVV SEV
Sbjct: 199 LLDPFTLRYCFLDADQYWRSSFKSLLTSRQLVEYIVLDV-EVVSSEV 336
Score = 42.0 bits (97), Expect(2) = 2e-54
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +2
Query: 345 GGTKYVLAVAQVARVSDFGKND 366
GGTKYVLA AQ ARVSDFGKND
Sbjct: 344 GGTKYVLADAQEARVSDFGKND 409
>TC10770 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM) (NY-REN-43
antigen), partial (4%)
Length = 481
Score = 54.7 bits (130), Expect = 3e-08
Identities = 26/32 (81%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Frame = +2
Query: 427 GKPRSWKLKSLNMEIDDK-GRTDPDKMSSEYE 457
GK RSWKLKSLNME+DDK R DPDKM SEYE
Sbjct: 2 GKARSWKLKSLNMEVDDKVARADPDKMHSEYE 97
>TC9447 similar to UP|Q7RLJ4 (Q7RLJ4) Predicted membrane protein, partial
(7%)
Length = 582
Score = 28.5 bits (62), Expect = 2.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 21 TICSVLCCMCGIPMQPNAANMCVKCLS 47
T+CS CCMC I N C+ L+
Sbjct: 203 TLCSYCCCMCCIQCFTRMNNQCLTALT 283
>TC14367 similar to UP|Q9ZRV1 (Q9ZRV1) Xyloglucan endotransglycosylase 1,
partial (96%)
Length = 1137
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = -2
Query: 312 WRASFKSLLTSRQLVEYVVLDVEEVVPSEVVTVGGTKYVL 351
W+A +KSLL S +V++VVL + P + + G K +L
Sbjct: 950 WKALWKSLLVSAVIVDHVVL----LHPPQPLVTSGIKLLL 843
>TC19832 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {Arabidopsis
thaliana;}, partial (75%)
Length = 530
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 22 ICSVLCCMCGIPMQPNAANMCV 43
+C LCC C I Q ANM +
Sbjct: 426 LCKCLCCFCTIKTQGRIANMSI 361
>TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein, complete
Length = 1109
Score = 27.3 bits (59), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 69 ESYFQHPKTWIKHLKPESDE 88
ES F H + WI+HL+P + +
Sbjct: 549 ESSFNHIQNWIRHLEPHASD 608
>TC16016
Length = 602
Score = 26.9 bits (58), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (57%)
Frame = +2
Query: 22 ICSVLCCMCGIPMQPNAANMCVKC 45
I S CC+ G+P + ++CV C
Sbjct: 515 IFSEFCCLIGLPSERKCVSLCV*C 586
>TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, partial (10%)
Length = 981
Score = 26.9 bits (58), Expect = 7.0
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +1
Query: 171 RQHVSHRRTFFYLEQLILKHGAAARAIRIKQ 201
R+H+ HRR F Q +L H +AI+ +Q
Sbjct: 772 RRHLKHRRLLFLA*QHLLAHHGLMQAIKRRQ 864
>TC9131 weakly similar to UP|O80986 (O80986) At2g26110 protein, partial
(21%)
Length = 781
Score = 26.6 bits (57), Expect = 9.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +1
Query: 230 RSKGYNKQLV----SHDTKSNNYNYRYTFSVEI 258
R GY K L+ S + NNYNY Y + +I
Sbjct: 361 RGAGYGK*LIKKP*SINLNHNNYNYNYNYDYDI 459
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,906,450
Number of Sequences: 28460
Number of extensions: 135294
Number of successful extensions: 722
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of query: 458
length of database: 4,897,600
effective HSP length: 93
effective length of query: 365
effective length of database: 2,250,820
effective search space: 821549300
effective search space used: 821549300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0106.9