BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.8
(1558 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427422 202 3e-52
BP054462 166 3e-41
BP063723 136 3e-32
BP055130 132 3e-31
BP046863 128 6e-30
BF177840 98 9e-21
AU089582 75 1e-19
BG662087 91 1e-18
BP055633 82 5e-16
AV410603 74 2e-13
TC13302 69 6e-12
AV426985 64 2e-10
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 51 2e-06
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 49 6e-06
TC18242 weakly similar to UP|O70495 (O70495) Plenty-of-prolines-... 43 3e-04
TC18698 43 3e-04
BP063336 39 0.008
BP064003 37 0.018
AV410570 37 0.024
BP067368 36 0.041
>AV427422
Length = 417
Score = 202 bits (515), Expect = 3e-52
Identities = 85/137 (62%), Positives = 110/137 (80%)
Frame = +1
Query: 1183 GLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDR 1242
GLPK+ G + +LVVVDR +K++HF+ L HPY AK IA++F++EVV+LHG P SIVSDRD
Sbjct: 7 GLPKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDP 186
Query: 1243 VFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSW 1302
+F+S FW E+FK+ GTKLK S+AYHP++DGQTEVVNRC+ETYLRC +PK W W+ W
Sbjct: 187 LFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPW 366
Query: 1303 AEFWYNTNYHSAIKTTP 1319
AE+WYNT+YH + TP
Sbjct: 367 AEYWYNTSYHVSTGQTP 417
>BP054462
Length = 422
Score = 166 bits (420), Expect = 3e-41
Identities = 77/140 (55%), Positives = 106/140 (75%)
Frame = +1
Query: 1308 NTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQN 1367
N+NY+ + K +PF+ALYGRE PV+ +G + + V R+ +L +L++NL K+Q+
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1368 RMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAY 1427
MR ANK RRDV Y++GD V+LK+QPY+ +SLAK+ N+KLSPRYYGPYPI+AKI AY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1428 KLQLPEGSQVHPVFHISLLK 1447
+L+LP S+VHPVFH+SLLK
Sbjct: 361 RLELPAHSRVHPVFHVSLLK 420
>BP063723
Length = 479
Score = 136 bits (342), Expect = 3e-32
Identities = 63/68 (92%), Positives = 66/68 (96%)
Frame = -3
Query: 1491 IRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLSLQGGRDVANPSSRPRFGNVYARRPKPQ 1550
IRWKDLPTFEDSWEDF KLLD FPNHQLED+L+LQGGRDVANPSSRPRFG+VYARRPKPQ
Sbjct: 477 IRWKDLPTFEDSWEDFCKLLDPFPNHQLEDQLNLQGGRDVANPSSRPRFGDVYARRPKPQ 298
Query: 1551 LEANILEA 1558
LEANILEA
Sbjct: 297 LEANILEA 274
>BP055130
Length = 567
Score = 132 bits (333), Expect = 3e-31
Identities = 59/112 (52%), Positives = 74/112 (65%)
Frame = +2
Query: 1189 GKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTF 1248
G I+VVVDR +KY HF Y + ++AE F+ +VKLHG P +IVSDRD+ F S F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358
Query: 1249 WSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWL 1300
W FKL GT L SS+YHPQTDGQTE +N+C+E YLRC P+ W +L
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
>BP046863
Length = 580
Score = 128 bits (322), Expect = 6e-30
Identities = 62/109 (56%), Positives = 84/109 (76%)
Frame = +1
Query: 1340 SVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKS 1399
SV+ V ER+ +L EL+ NL KAQ++MR QANKHRR V Y+VG+ V+LK+QPYKL++
Sbjct: 253 SVEAVNMLIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQN 432
Query: 1400 LAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKK 1448
LA+R NQKLSPR+YGP+ ++ ++ AY L L S+VHPVFH+SLL+K
Sbjct: 433 LAQRKNQKLSPRFYGPFKVLERVVQVAY*LDLXSESRVHPVFHLSLLEK 579
>BF177840
Length = 410
Score = 98.2 bits (243), Expect = 9e-21
Identities = 48/92 (52%), Positives = 58/92 (62%)
Frame = +2
Query: 1234 TSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKP 1293
TSIVSDRD F+S FW ++ GTKL +S+ HPQTDGQTEVVN+ + T LR V
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 1294 KQWPKWLSWAEFWYNTNYHSAIKTTPFKALYG 1325
K W WL EF YN HS K +PF+ +YG
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYG 286
>AU089582
Length = 383
Score = 74.7 bits (182), Expect(2) = 1e-19
Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = +2
Query: 1215 AKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQT 1274
A + A++++ E+V LHG P SI+SDR F S FW GT+LK S+A+HPQTDGQ+
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1275 EVVNRCVETYLR-CV 1288
E + +E LR CV
Sbjct: 191 ERTIQILEDMLRACV 235
Score = 40.0 bits (92), Expect(2) = 1e-19
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +3
Query: 1296 WPKWLSWAEFWYNTNYHSAIKTTPFKALYGR--ESPV 1330
W ++LS EF YN +Y S+I PF+ALYGR SP+
Sbjct: 255 WDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPI 365
>BG662087
Length = 373
Score = 90.9 bits (224), Expect = 1e-18
Identities = 46/113 (40%), Positives = 68/113 (59%)
Frame = +1
Query: 673 GGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPK 732
G WR VDY +NKA D +P+P ID+L+D + S +D SGYHQI+M D K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 733 TAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYS 785
TAF T +Y Y +PFGL NA +T+Q LM++V + + + V+ ++++ S
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKS 354
>BP055633
Length = 528
Score = 82.4 bits (202), Expect = 5e-16
Identities = 40/96 (41%), Positives = 61/96 (62%)
Frame = -2
Query: 167 WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVFL 226
W FK+A+ +FQ +PF LL++KQ+GSV E+ FE A ++ D E +F+
Sbjct: 518 WTKFKEAMLEQFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIFV 339
Query: 227 NGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAM 262
NGL+EEI AE+KLY L ++ +AL++E+KN A+
Sbjct: 338 NGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAV 231
>AV410603
Length = 162
Score = 73.6 bits (179), Expect = 2e-13
Identities = 33/54 (61%), Positives = 41/54 (75%)
Frame = +1
Query: 687 ATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEG 740
+T+ D FP+P +DELLDE+ + FSKLDL+SGYHQI +K ED KT FRTH G
Sbjct: 1 STVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>TC13302
Length = 533
Score = 68.9 bits (167), Expect = 6e-12
Identities = 53/148 (35%), Positives = 67/148 (44%), Gaps = 31/148 (20%)
Frame = -2
Query: 1312 HSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWT--AERNLILEELKSNLE------ 1363
H AIKT PFKALY R + ++ KG SL SVD+V E+ I N
Sbjct: 520 HLAIKTNPFKALYERNTLMVIKGGVSLASVDDVITLNRVVEKPCIDYRYGENSPYKG*SK 341
Query: 1364 -----------------------KAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSL 1400
KA N+MRQQ +HRRD+Q VGD+V P
Sbjct: 340 PHPLS*LLR*S*A*PKF**EQ*AKATNQMRQQV-RHRRDIQLHVGDMV*SN-NPTL*TRA 167
Query: 1401 AKRSNQKLSPRYYGPYPIIAKINPAAYK 1428
+R N KL PR+YG + ++ KINP K
Sbjct: 166 YQRVNHKLCPRFYGTHEMVEKINPVV*K 83
>AV426985
Length = 422
Score = 63.5 bits (153), Expect = 2e-10
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Frame = +1
Query: 345 LTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEE---EEIFEEAEDGE 401
++ E+Q R K LC+ C +K+ H C K ++ + E D ++ +++ D
Sbjct: 16 ISPAEMQLRREKNLCYWCDEKFSFNHKCPNKYLMMLQLTDENDSDDTSNQQVTTTISDDS 195
Query: 402 FVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPV 461
V + SLN+ G T + + G+IGN V +L+D G++ F+ + L++P+
Sbjct: 196 PVEDH---HFSLNAMRGFTGVGTIRFTGQIGNISVQVLVDGGSSDCFLQPHIAKFLQLPI 366
Query: 462 IATSEYVVEVGNGAK 476
+ + V VGNG K
Sbjct: 367 ESKPNFKVLVGNGQK 411
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/43 (48%), Positives = 33/43 (75%), Gaps = 1/43 (2%)
Frame = +3
Query: 1407 KLSPRYYGPYPIIAKINPAAYKLQL-PEGSQVHPVFHISLLKK 1448
KLSPR+ GP+ ++ ++ +Y+L L P+ S VHPVFH+S+L+K
Sbjct: 48 KLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRK 176
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 48.9 bits (115), Expect = 6e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +2
Query: 1257 GTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIK 1316
G +++FSS HPQT+GQTE N+ + ++ +W L + YNT S+IK
Sbjct: 62 GIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPIVLWSYNTMPQSSIK 241
Query: 1317 TTPFKALYGRES 1328
TPF YG ++
Sbjct: 242 ETPF*LTYGADT 277
>TC18242 weakly similar to UP|O70495 (O70495) Plenty-of-prolines-101,
partial (5%)
Length = 490
Score = 43.1 bits (100), Expect = 3e-04
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 39 SRDRRRTRGRSNTP--RHRRSSREHNSVSTARTYDGSRTGSRTGSRTASRSR 88
SR R R+R S +P R+RRS S S+ R Y SR+GS + SRT SRSR
Sbjct: 3 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSR 158
Score = 37.7 bits (86), Expect = 0.014
Identities = 23/49 (46%), Positives = 28/49 (56%)
Frame = +3
Query: 39 SRDRRRTRGRSNTPRHRRSSREHNSVSTARTYDGSRTGSRTGSRTASRS 87
SR R RS +P RSSR H S S + + SRT SR+ SR+ SRS
Sbjct: 33 SRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRS 179
>TC18698
Length = 808
Score = 43.1 bits (100), Expect = 3e-04
Identities = 21/64 (32%), Positives = 36/64 (55%)
Frame = -2
Query: 732 KTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELH 791
KT + + +Y Y V+P GL N +T+Q LM+++ + K V V+ D+++ S E H
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FH 622
Query: 792 KDHL 795
+ L
Sbjct: 621 RGDL 610
>BP063336
Length = 539
Score = 38.5 bits (88), Expect = 0.008
Identities = 17/24 (70%), Positives = 19/24 (78%)
Frame = -1
Query: 1530 VANPSSRPRFGNVYARRPKPQLEA 1553
VANP++RPRFG VY RRPK L A
Sbjct: 329 VANPNTRPRFGRVYERRPKQVLAA 258
>BP064003
Length = 509
Score = 37.4 bits (85), Expect = 0.018
Identities = 31/98 (31%), Positives = 51/98 (51%), Gaps = 7/98 (7%)
Frame = +1
Query: 978 LGSQFVIHTDQ-RSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIE------NKAAD 1030
LGS+FVI TD + FL +R + +W L G +++ P ++ NK AD
Sbjct: 112 LGSRFVIKTDNVATSSFLTQKR--APTRARWQDFLSG---GVRHGPRVQAREDQSNKVAD 276
Query: 1031 ALSRKLQFSAISSVQCAEWADLEAEILGDERYRKVLQE 1068
ALSRK + ++ + A+ + L+ I ER R+ L++
Sbjct: 277 ALSRKAELASNKLEEIADMSQLKGAI--PERIREGLEK 384
>AV410570
Length = 412
Score = 37.0 bits (84), Expect = 0.024
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 334 QPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQL 379
QP+ K R++ E+Q R KGLCF C +K+ H C K L
Sbjct: 71 QPQAK-----RISPAEMQLRREKGLCFTCDEKYSWNHKCPNKQLML 193
>BP067368
Length = 322
Score = 36.2 bits (82), Expect = 0.041
Identities = 22/58 (37%), Positives = 25/58 (42%)
Frame = -2
Query: 44 RTRGRSNTPRHRRSSREHNSVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLR 101
R R N R R SRE + DG R SR S +R R+H E HHR R
Sbjct: 258 RVREDRNVDRDREKSRER-----VKDKDGERERSRERSSDRARDRDHREDRHHRDRDR 100
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,855,321
Number of Sequences: 28460
Number of extensions: 335491
Number of successful extensions: 2685
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 2318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2530
length of query: 1558
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1456
effective length of database: 1,994,680
effective search space: 2904254080
effective search space used: 2904254080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0106.8