BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.7
(717 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI967750 76 2e-14
TC17183 weakly similar to UP|Q95RC5 (Q95RC5) LD44506p (CG5745-PA... 35 0.042
TC16838 similar to UP|BAD07764 (BAD07764) GTPase activating prot... 34 0.071
TC15464 34 0.071
TC12094 similar to UP|Q8VZ74 (Q8VZ74) GTP-binding protein-like, ... 32 0.35
AV768789 30 1.0
AV415922 29 3.0
TC16131 homologue to UP|MSI1_LYCES (O22466) WD-40 repeat protein... 28 5.1
TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%) 28 5.1
TC16495 similar to UP|Q9LUA5 (Q9LUA5) Genomic DNA, chromosome 3,... 28 5.1
CN825130 28 6.7
TC18884 similar to UP|Q39802 (Q39802) Cytokinin induced message,... 28 6.7
TC19994 similar to UP|Q949K3 (Q949K3) Suppressor-like protein, p... 28 6.7
TC19386 similar to GB|AAR24233.1|38566686|BT010866 At1g04520 {Ar... 27 8.7
>AI967750
Length = 348
Score = 76.3 bits (186), Expect = 2e-14
Identities = 37/78 (47%), Positives = 50/78 (63%), Gaps = 2/78 (2%)
Frame = +2
Query: 376 DVVRTDSHLDFYE--DTRNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVIFEDNADA 433
DVVRTD L+FYE D N+ + DIL Y++ + GYCQGMSDLLSP + + D ++A
Sbjct: 113 DVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILSVMGDESEA 292
Query: 434 FWCFEMLLRRMRENFQME 451
FWC L+ R+ NF +
Sbjct: 293 FWCLVALMERLGPNFNRD 346
>TC17183 weakly similar to UP|Q95RC5 (Q95RC5) LD44506p (CG5745-PA), partial
(6%)
Length = 678
Score = 35.0 bits (79), Expect = 0.042
Identities = 20/60 (33%), Positives = 30/60 (49%)
Frame = +1
Query: 452 GPTRVMKQLRELWHILELADKEMFAHLSKIGAESLHFAFRMLLVLFRRELSFNEALSMWE 511
G R++ +L+EL + D + H+ G E L FAFR L RE+ FN +W+
Sbjct: 7 GIQRLVFKLKEL---VRRIDDPVSTHMENQGLEFLQFAFRWFNCLLIREIPFNMVTRLWD 177
>TC16838 similar to UP|BAD07764 (BAD07764) GTPase activating protein-like,
partial (16%)
Length = 586
Score = 34.3 bits (77), Expect = 0.071
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 488 FAFRMLLVLFRRELSFNEALSMWEMMW 514
F FR +L+ F+RE + + + +WE++W
Sbjct: 22 FCFRWVLIPFKREFEYEDTMRLWEVLW 102
>TC15464
Length = 672
Score = 34.3 bits (77), Expect = 0.071
Identities = 20/77 (25%), Positives = 41/77 (52%), Gaps = 6/77 (7%)
Frame = +2
Query: 441 LRRMRENFQME---GPTRVMKQLRELWHILELADKEMFAHL---SKIGAESLHFAFRMLL 494
L R+NF + P + + L +L+ D+E++ HL SK+ + +AFR +
Sbjct: 2 LSGFRDNFVQQLDNSPVGIRATITRLSQLLKEHDEELWRHLEITSKVNPQ--FYAFRWIT 175
Query: 495 VLFRRELSFNEALSMWE 511
+L +E +F +++ +W+
Sbjct: 176 LLLTQEFNFADSIHIWD 226
>TC12094 similar to UP|Q8VZ74 (Q8VZ74) GTP-binding protein-like, partial
(19%)
Length = 576
Score = 32.0 bits (71), Expect = 0.35
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 650 RETHSFDDMIKASALIFCFYRVINYYYESHNCY-TPITLFLLFMFILSGV 698
R+ H+ + + ++ RVI Y++ S N Y TPIT+ L F+LS +
Sbjct: 344 RQQHNLKNFREGPYIMIDVQRVIRYFFTS*NTYLTPITIVLKEAFVLSPI 195
>AV768789
Length = 556
Score = 30.4 bits (67), Expect = 1.0
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +2
Query: 530 CLEALDIHLPRDSSNDLREEVADSDDGSVKSGSQSNHNENDNDNTKASQQSNHENTDVSV 589
C L + LP + SND+ + DG + QS +++DN++ ++ +H ++D+ +
Sbjct: 251 CASDLLVTLPSEISNDMICSILR*CDGRILFSLQSFFSDSDNNSAPSNPLISHSSSDLVI 430
>AV415922
Length = 422
Score = 28.9 bits (63), Expect = 3.0
Identities = 15/52 (28%), Positives = 29/52 (54%)
Frame = +1
Query: 547 REEVADSDDGSVKSGSQSNHNENDNDNTKASQQSNHENTDVSVWDAKLKSLS 598
R++ DSD G +N+++N+N+N + +N+ N + + D + SLS
Sbjct: 121 RDDGQDSDTQFNSKGINTNNDDNNNNNNNNNNNNNNNNLPI-LSDRRCFSLS 273
>TC16131 homologue to UP|MSI1_LYCES (O22466) WD-40 repeat protein MSI1,
partial (41%)
Length = 625
Score = 28.1 bits (61), Expect = 5.1
Identities = 20/66 (30%), Positives = 33/66 (49%)
Frame = -2
Query: 16 AGSVNFRKVSSIVRDIGDPCLSQSPVKVVVTVNRMLKPDKWQALSDSEGKVLGFRKALKL 75
+G +NF + ++ D+ P + +VVV V R++ + L E +V+GF
Sbjct: 489 SGPINFSIMVDLLNDLHLPVGATEAAEVVVVVTRVVLGVMERKLDLCEHEVVGF------ 328
Query: 76 IVLGGV 81
VLGGV
Sbjct: 327 -VLGGV 313
>TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%)
Length = 1196
Score = 28.1 bits (61), Expect = 5.1
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 521 SLAYDLEVNCLEALDIHLPRDSSNDLREEVADSDDGSVKSGSQSNHNENDNDNTKASQQS 580
S++YDLE N ++ + S R+ +DSD GS S E+ + + S S
Sbjct: 551 SVSYDLENNDVDDKEEKAKSSSKKAKRKHRSDSDSGS-DSEDSVFETESGSSSVTGSDYS 727
Query: 581 NHENTDVSVWDAK 593
+ ++D S D++
Sbjct: 728 SGSSSDSSSSDSE 766
>TC16495 similar to UP|Q9LUA5 (Q9LUA5) Genomic DNA, chromosome 3, P1 clone:
MPE11, partial (14%)
Length = 919
Score = 28.1 bits (61), Expect = 5.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 557 SVKSGSQSNHNENDNDNTKASQQSNHENTDVSVWDAKLKSLSSYP 601
S + G N+N N+ND K ++ +N++ ++KL LSS P
Sbjct: 349 SFQMGESCNNNNNNNDTRKRVRE---DNSEADSPESKLPRLSSGP 474
>CN825130
Length = 742
Score = 27.7 bits (60), Expect = 6.7
Identities = 29/128 (22%), Positives = 54/128 (41%), Gaps = 24/128 (18%)
Frame = +1
Query: 130 SVGTGS---------LAYVVGSKVMDMRTSSKLEREMKGKTS---TSNDNNIEVGKYN-- 175
SVG G+ L +V G+K +S+ +E+ TS +N+N + G +N
Sbjct: 178 SVGNGNPPPPPSNYQLNWVFGNKF----SSNGNHQELTSTTSLPLVNNNNIVNDGAHNLI 345
Query: 176 -ERSIICTEAAKEGHHESSNGSVDLASL---------RASTDGATYDSYGQQNCSSPNLG 225
S+ ++ + H S++ ++ +L +STD + S G ++C+SP
Sbjct: 346 SVPSLYSSQQQHQSHQTSASANMSATALLQKAAQIGTTSSTDPSFLGSLGLRSCNSPRQD 525
Query: 226 RETDGSHC 233
C
Sbjct: 526 HGNSNKFC 549
>TC18884 similar to UP|Q39802 (Q39802) Cytokinin induced message, partial
(34%)
Length = 618
Score = 27.7 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +3
Query: 667 CFYRVINYYYESHNCYTPITLFLLFMFILSG 697
C + INYY ES+ CY + +FL +I G
Sbjct: 528 CLLQCINYYEESNACYV-LIIFLKAEYIYMG 617
>TC19994 similar to UP|Q949K3 (Q949K3) Suppressor-like protein, partial
(10%)
Length = 873
Score = 27.7 bits (60), Expect = 6.7
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +2
Query: 539 PRDSSNDLRE--EVADSDDGSVKSGSQSNHNENDNDNTKASQQSNHENTD 586
P D + L+ EVADS+ ++ GS S+ + +D+D + ++ ++ +N+D
Sbjct: 5 PEDMESILKRPGEVADSN---IEEGSSSDLDFDDSDESDMAESADEDNSD 145
>TC19386 similar to GB|AAR24233.1|38566686|BT010866 At1g04520 {Arabidopsis
thaliana;} , partial (10%)
Length = 522
Score = 27.3 bits (59), Expect = 8.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = +1
Query: 665 IFCFYRVINYYYESHNCY-------TPITLFLLFMFILSGVEYLLGLDYV 707
IF +Y+ YY + + CY P T ++M + S + LL L ++
Sbjct: 370 IFLYYKGKRYYTQRNECYPEWMENFVPTTPLAMWMILFSLISILLTLHFL 519
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,587,045
Number of Sequences: 28460
Number of extensions: 168174
Number of successful extensions: 973
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of query: 717
length of database: 4,897,600
effective HSP length: 97
effective length of query: 620
effective length of database: 2,136,980
effective search space: 1324927600
effective search space used: 1324927600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0106.7