BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.4
(423 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB826981 37 0.005
TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogen... 35 0.023
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 33 0.12
BP056890 32 0.15
BI418990 32 0.26
AV423678 31 0.34
AV766383 31 0.34
TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_1... 31 0.44
BI418438 29 1.3
AW428867 29 1.3
CB828882 29 1.7
TC17500 UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase t... 29 1.7
AV426815 28 2.2
TC12082 weakly similar to UP|Q40385 (Q40385) Pistil extensin-lik... 28 2.2
TC14492 similar to UP|Q945P5 (Q945P5) AT3g62580/T12C14_280, part... 28 2.2
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%) 28 2.2
TC13196 28 2.2
BP044806 28 2.2
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta... 28 2.2
TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Ar... 28 2.2
>CB826981
Length = 591
Score = 37.4 bits (85), Expect = 0.005
Identities = 31/108 (28%), Positives = 40/108 (36%), Gaps = 1/108 (0%)
Frame = +3
Query: 58 WQHPGCEPYYTKECRDNLSNFPPQDMQNLPSPAREENILHDEVQGGED-PIIQPDQVIGV 116
WQ CE Y K+C +L N P +N ++ EVQG + P+ QP Q
Sbjct: 96 WQGACCESYRRKKCLIDL-NLAPAVTENREQEGPSSQVVTQEVQGDQQPPVAQPPQ---- 260
Query: 117 MPPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHA 164
D L ++PP Q QP L D SP A
Sbjct: 261 ------DALPPEVAQPPEVAQQPQVAQPPLIDVEAIDDDDVIESSPRA 386
>TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogenase-like
protein , partial (47%)
Length = 1041
Score = 35.0 bits (79), Expect = 0.023
Identities = 35/154 (22%), Positives = 54/154 (34%), Gaps = 12/154 (7%)
Frame = +2
Query: 74 NLSNFPPQDMQNLPSPAREE--NILHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSE 131
+ +PP+ Q LP P+ + L + P P +P P S+ S
Sbjct: 11 HFQTWPPEPPQ*LPKPSDSPLPHFLSHQNSHSPPPSPSPSAATATVPAP------SSSSS 172
Query: 132 PPPRQLQTSPQQPRLSPQRIQQDAR------AALISPHAKGGSASSKTAASSHTSSERLS 185
PPP PR S +R+ +R A ISP S S + R
Sbjct: 173 PPPSTPNPPSSSPRSSAKRVSNSSRTSPTSTAPTISPLRSSAPRSPSATP*SSAVAPRSI 352
Query: 186 ALLVEDPL----SIFQSFFDGTLDLESPPRQAEI 215
A + PL S+ + + T + PP ++
Sbjct: 353 ARCLNPPLVGSRSLEELASESTTWISPPPLSMDV 454
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 32.7 bits (73), Expect = 0.12
Identities = 22/71 (30%), Positives = 31/71 (42%)
Frame = +1
Query: 83 MQNLPSPAREENILHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSEPPPRQLQTSPQ 142
+ N P P + + H + Q P QP P P+ S+P P+ +Q S
Sbjct: 13 LHNEPQPLQYQPQPHLQHQPQHHPHFQPH------PQPQLQ------SQPQPQHIQQSQP 156
Query: 143 QPRLSPQRIQQ 153
QP+ PQ IQQ
Sbjct: 157 QPQSQPQHIQQ 189
>BP056890
Length = 581
Score = 32.3 bits (72), Expect = 0.15
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = -2
Query: 162 PHAKGGSASSKTAASSHTSSERLSALLVEDPLSIFQSFFDG--------TLDLESPPR 211
PH+ GS+SS TA+S+H L+ DP S+F S + L L+SPP+
Sbjct: 481 PHSYSGSSSSSTASSTHQKYPH----LIFDPNSVFLSNYRTFRRLETWVALGLDSPPK 320
>BI418990
Length = 454
Score = 31.6 bits (70), Expect = 0.26
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Frame = +1
Query: 48 TFYFNSKPIAWQH-----PGCEP-YYTKECRDNLSNFPPQDMQNLPSPAREENILHDEVQ 101
T + ++P + QH P P T +L+N P + + PS + H
Sbjct: 28 TTVYATRPNSTQHATQRSPTASP*PSTPTTASSLTNSKPLPITSTPSSSPTPTPTHSSTS 207
Query: 102 GGEDPIIQPDQVIGVMPPPKADVLASAHSEPPPRQL 137
G + P+ P + PP A A+ S+PPP ++
Sbjct: 208 GSQLPLTAPK----LTPPSAA*TTAAKPSDPPPSRI 303
>AV423678
Length = 426
Score = 31.2 bits (69), Expect = 0.34
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 119 PPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAKGGSASSKTAASSH 178
PP A+A S PPP SP R ++ +S S++ + AA++
Sbjct: 102 PPPLTTSAAAISSPPP------------SPPRFTAPPPSSSVSHPTSSASSAPRPAATAA 245
Query: 179 TSSERLSALL 188
TS+ R S+LL
Sbjct: 246 TSASRKSSLL 275
>AV766383
Length = 474
Score = 31.2 bits (69), Expect = 0.34
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +2
Query: 118 PPPKADVLASAHSEPPPRQLQTSPQQPR 145
PPP A V A EPPP Q QQPR
Sbjct: 323 PPPAAPVPTLAAPEPPPMPCQGGRQQPR 406
>TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_13), partial
(33%)
Length = 941
Score = 30.8 bits (68), Expect = 0.44
Identities = 30/119 (25%), Positives = 43/119 (35%), Gaps = 2/119 (1%)
Frame = +3
Query: 118 PPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAKGGSASSKTAASS 177
PPP A+A S PP P SP+ + +P + T S
Sbjct: 126 PPPPPHAPAAASSSPPTPSATLPPTPSPPSPRSDPSPLSTSTTNPTTSSSTTPKTTTNKS 305
Query: 178 HTSSERLS--ALLVEDPLSIFQSFFDGTLDLESPPRQAEIAETAQSGGVPDDSRIEAAL 234
+ ++ RLS A PL L SPP T+ + +P S ++AAL
Sbjct: 306 NPNTARLSHAAP*GSPPL----------LTTTSPP-SVTAPRTSSASRLPSSSALDAAL 449
>BI418438
Length = 431
Score = 29.3 bits (64), Expect = 1.3
Identities = 19/86 (22%), Positives = 30/86 (34%)
Frame = +1
Query: 76 SNFPPQDMQNLPSPAREENILHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSEPPPR 135
S +PP P P ++ P + PPP + PPPR
Sbjct: 130 SQYPPFS----PCPLSSPSLFSSSSSPSPPPPTATTTTTTIPPPPPSPT-------PPPR 276
Query: 136 QLQTSPQQPRLSPQRIQQDARAALIS 161
Q + P +P SP + +L++
Sbjct: 277 QKSSKPARPPASPSNANPPSPTSLLT 354
>AW428867
Length = 375
Score = 29.3 bits (64), Expect = 1.3
Identities = 26/102 (25%), Positives = 40/102 (38%)
Frame = +3
Query: 61 PGCEPYYTKECRDNLSNFPPQDMQNLPSPAREENILHDEVQGGEDPIIQPDQVIGVMPPP 120
P +P+ +CR S+ P + +LP H QG ++ MPPP
Sbjct: 27 PSSQPW--PQCRGPFSHSLPHPLPHLP---------HFSAQG----FSSSSNILQQMPPP 161
Query: 121 KADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISP 162
S P T P++ R P+R+Q + L+SP
Sbjct: 162 ------SLARHP------TRPRKARSGPRRLQAPTKQGLLSP 251
>CB828882
Length = 513
Score = 28.9 bits (63), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 118 PPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQ 152
PPP AS + P+Q TSP+ P SP +Q
Sbjct: 369 PPPPKSS*ASQRTPATPQQ*STSPEPPESSPPVLQ 265
>TC17500 UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase type 2C,
complete
Length = 1325
Score = 28.9 bits (63), Expect = 1.7
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 79 PPQDMQNLPSPARE--ENILHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSEPPPRQ 136
PP + P P R EN L P P PPP+AD +A PPP +
Sbjct: 675 PPSSTPHYPPPHRPYYENTLPSLPPSPPPP---PHSRTSQPPPPQAD--TAAPGTPPPPE 511
Query: 137 LQTSPQQPRLS 147
L+ Q+ R S
Sbjct: 510 LRRDRQKQRSS 478
>AV426815
Length = 391
Score = 28.5 bits (62), Expect = 2.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 118 PPPKADVLASAHSEPPPRQLQTSPQQPRLSP 148
PPP+ S+HS PPP P P LSP
Sbjct: 183 PPPQPTPF*SSHSHPPP-----PPHPPSLSP 106
>TC12082 weakly similar to UP|Q40385 (Q40385) Pistil extensin-like protein,
partial (11%)
Length = 308
Score = 28.5 bits (62), Expect = 2.2
Identities = 16/44 (36%), Positives = 19/44 (42%)
Frame = +1
Query: 105 DPIIQPDQVIGVMPPPKADVLASAHSEPPPRQLQTSPQQPRLSP 148
DP+ P PP L S HS PPP T+ P +SP
Sbjct: 127 DPLPTPTPTPTPPSPPPPWPLDSHHSTPPPPPPPTTTTLPSISP 258
>TC14492 similar to UP|Q945P5 (Q945P5) AT3g62580/T12C14_280, partial (85%)
Length = 1136
Score = 28.5 bits (62), Expect = 2.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 10 TCFSSKPPPIALSSSPSGLESSSSSL 35
T +S PP + LS SPS +ESS S +
Sbjct: 185 TSSASPPPSVLLSGSPSSVESSCSRI 262
>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
Length = 1036
Score = 28.5 bits (62), Expect = 2.2
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Frame = +3
Query: 131 EPPPRQLQTSPQQPRLSPQRIQQDARAALI--------SPHAKGGSASSKTAASSHTSSE 182
+PPP Q P PQR A AL+ +P A + S+ +SS +SS
Sbjct: 57 KPPPPQTAPPPPTQLSPPQRPNSTAPTALLTALNPSTAAPAAAASAPSASG*SSSSSSSS 236
Query: 183 RLSALLVEDPLS 194
SA+L S
Sbjct: 237 SSSAVLASPSTS 272
>TC13196
Length = 490
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -2
Query: 118 PPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAK 165
P P A HS PPPR +S + PR S Q Q A A PH +
Sbjct: 204 PSPPQPKRAPHHSNPPPR---SSSEYPRNSEQN-PQPAAAPPCGPHPR 73
>BP044806
Length = 538
Score = 28.5 bits (62), Expect = 2.2
Identities = 22/70 (31%), Positives = 28/70 (39%), Gaps = 4/70 (5%)
Frame = +1
Query: 110 PDQVIGVM-PPPKADVLASAHSEPPPRQLQTSPQQPRLSPQ---RIQQDARAALISPHAK 165
P IG + PPP + ASA PPR S Q +I Q R I P K
Sbjct: 283 PPPAIGTLTPPPTENAYASADPSNPPRNENASADPSNTKHQFHPQIHQIHRTPNIKPTPK 462
Query: 166 GGSASSKTAA 175
+ S+ +A
Sbjct: 463 SIKSESQPSA 492
>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
chloroplast precursor , partial (54%)
Length = 627
Score = 28.5 bits (62), Expect = 2.2
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +3
Query: 118 PPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAKGGSASSKTAASS 177
PPP + + P P T P S +R R + ISP ++SKT+ASS
Sbjct: 261 PPPPPATPPHSPTSPAPTNPSTPPPPTWRSSRRSFLTPRCSTISPTQ---PSASKTSASS 431
Query: 178 HTSSER 183
T+ R
Sbjct: 432 STTLPR 449
>TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;}, partial (28%)
Length = 812
Score = 28.5 bits (62), Expect = 2.2
Identities = 17/52 (32%), Positives = 26/52 (49%)
Frame = +1
Query: 130 SEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAKGGSASSKTAASSHTSS 181
S PPP QL T+P +P P+R+ + + A S +S +A TS+
Sbjct: 346 SSPPPPQLSTTPTRP--DPERVSAAPSSPV*PREAASTSHASASAPPRGTST 495
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.128 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,677,519
Number of Sequences: 28460
Number of extensions: 110137
Number of successful extensions: 1076
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of query: 423
length of database: 4,897,600
effective HSP length: 93
effective length of query: 330
effective length of database: 2,250,820
effective search space: 742770600
effective search space used: 742770600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0106.4