BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.16
(282 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10090 weakly similar to UP|Q9ZWP6 (Q9ZWP6) Lectin, partial (43%) 285 6e-78
TC14944 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA),... 182 4e-47
TC14501 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA),... 182 4e-47
TC18976 similar to UP|LCB2_ROBPS (Q42372) Bark agglutinin I, pol... 129 4e-31
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 79 1e-15
TC17134 weakly similar to UP|LEC_BOWMI (P42088) Lectin (Agglutin... 62 1e-10
AV765853 34 0.032
BP028770 28 1.3
TC13209 similar to UP|Q9LMW1 (Q9LMW1) F5M15.14, partial (58%) 28 1.8
BP075088 27 3.9
TC10838 weakly similar to PIR|T04232|T04232 pathogenesis-related... 27 5.1
AV778116 26 8.7
TC12570 26 8.7
TC9572 homologue to UP|O63067 (O63067) Aspartokinase-homoserine ... 26 8.7
>TC10090 weakly similar to UP|Q9ZWP6 (Q9ZWP6) Lectin, partial (43%)
Length = 461
Score = 285 bits (729), Expect = 6e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +3
Query: 1 MASFQSQKSLTSLLTLFFLLLVNKVNSTDYLSFTFNQFTPQQPDLLFQGDALVAPTGKLQ 60
MASFQSQKSLTSLLTLFFLLLVNKVNSTDYLSFTFNQFTPQQPDLLFQGDALVAPTGKLQ
Sbjct: 36 MASFQSQKSLTSLLTLFFLLLVNKVNSTDYLSFTFNQFTPQQPDLLFQGDALVAPTGKLQ 215
Query: 61 LTKVENDLPVYKSTGRALYVAPVHIWDSKTGNVASFITSFSFIIDSPNVNKIADGLAFFL 120
LTKVENDLPVYKSTGRALYVAPVHIWDSKTGNVASFITSFSFIIDSPNVNKIADGLAFFL
Sbjct: 216 LTKVENDLPVYKSTGRALYVAPVHIWDSKTGNVASFITSFSFIIDSPNVNKIADGLAFFL 395
Query: 121 APVDTQPQKPGGLLGIFDNDDP 142
APVDTQPQKPGGLLGIFDNDDP
Sbjct: 396 APVDTQPQKPGGLLGIFDNDDP 461
>TC14944 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA), partial
(85%)
Length = 1155
Score = 182 bits (463), Expect = 4e-47
Identities = 115/259 (44%), Positives = 151/259 (57%), Gaps = 2/259 (0%)
Frame = +2
Query: 4 FQSQKSLTSLLTLFFLLLVNKVNSTDYLSFTFNQFTPQQPDLLFQGDALVAPTGKLQLTK 63
+ + +L +L LLL KVNS + +SF F +FT L+ QGDA + G+L L
Sbjct: 47 YSNPSTLKVVLASLLLLLTIKVNSVEGVSFNFTKFT-DDGSLILQGDAKIWTDGRLALP- 220
Query: 64 VENDLPVYKSTGRALYVAPVHIWDSKTGNVASFITSFSFIIDSPNVNKIADGLAFFLAPV 123
+D + K+T R LY PV IWDS TG+VASF++SFSF++ KI+DGL FFLAP
Sbjct: 221 --SDPLIGKTTSRVLYATPVPIWDSTTGSVASFVSSFSFVVSDVPGYKISDGLVFFLAPW 394
Query: 124 DT--QPQKPGGLLGIFDNDDPSQSNQVVAVEFDTHFNSNWDPKSPHIGIDVGSIQSSNAT 181
T P G LGI D+ + NQ VAVEFD+ +N+ DP HIGIDV S+ S N
Sbjct: 395 GTTIPPNSEGKNLGIL--DEKNGYNQFVAVEFDS-YNNTRDPTFRHIGIDVNSVMSMNLV 565
Query: 182 SWGAAYGEVANVFIHYQASTKELTVSLDHPSSKDTYTVSSVVDLKNVLPEYVRVGFSATT 241
W G + I Y + TK L+V + H + + T TV+ +DLK VLP+ V VGFSATT
Sbjct: 566 KWNRVSGALEKAIIIYDSPTKTLSVVVTHQNGQIT-TVAQQIDLKVVLPKEVSVGFSATT 742
Query: 242 GLNPDHVETNDVLSWSFES 260
H E +D+ SWSF S
Sbjct: 743 W--NTHRERHDIHSWSFTS 793
>TC14501 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA), partial
(86%)
Length = 1066
Score = 182 bits (463), Expect = 4e-47
Identities = 120/256 (46%), Positives = 143/256 (54%), Gaps = 2/256 (0%)
Frame = +1
Query: 13 LLTLFFLLLVNKVNSTDYLSFTFNQFTPQQPDLLFQGDALVAPTGKLQLTKVENDLPVYK 72
L LFFLL +N VN +SF F +FT L+ QGDA + G L L D V
Sbjct: 85 LACLFFLLAIN-VNLAAAISFNFTEFT-DDGSLIIQGDAKIWADGSLALP---TDPSVGF 249
Query: 73 STGRALYVAPVHIWDSKTGNVASFITSFSFIIDSPNVNKIADGLAFFLAPVDTQ--PQKP 130
+T RALY PV IWDS TGNVASF+TSFSFII ADGL FFLAP T+ +
Sbjct: 250 TTSRALYATPVPIWDSTTGNVASFVTSFSFIIKDFEDYNPADGLVFFLAPFGTEIPKEST 429
Query: 131 GGLLGIFDNDDPSQSNQVVAVEFDTHFNSNWDPKSPHIGIDVGSIQSSNATSWGAAYGEV 190
GG GI + D NQ+VAVEFDT N WD HIGIDV S+ S W G +
Sbjct: 430 GGRFGIINGKD--AFNQIVAVEFDTFINP-WDSSPRHIGIDVNSLISLKTVPWNKVAGSL 600
Query: 191 ANVFIHYQASTKELTVSLDHPSSKDTYTVSSVVDLKNVLPEYVRVGFSATTGLNPDHVET 250
V I Y + TK L+V + H + + + T+S +DLK VLPE V VGFSATT E
Sbjct: 601 EKVTIIYDSQTKTLSVLVIHENGQIS-TISQEIDLKVVLPEEVSVGFSATT--TSGGRER 771
Query: 251 NDVLSWSFESDLKAGG 266
+D+ SWSF S L G
Sbjct: 772 HDIYSWSFTSTLNTNG 819
>TC18976 similar to UP|LCB2_ROBPS (Q42372) Bark agglutinin I, polypeptide B
precursor (RPbAI) (LECRPA2), partial (14%)
Length = 617
Score = 129 bits (325), Expect = 4e-31
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +1
Query: 221 SVVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAGGPQAAGAFKNNHGLD 280
SVVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAGGPQAAGAFKNNHGLD
Sbjct: 1 SVVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAGGPQAAGAFKNNHGLD 180
Query: 281 SM 282
SM
Sbjct: 181 SM 186
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 78.6 bits (192), Expect = 1e-15
Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Frame = +3
Query: 13 LLTLFFLLLVNKVNSTDYLSFTFNQFTPQQPDLLFQGDALVAPTGKLQLTKVENDLPVYK 72
LL L L +T LSF F + ++GD + G + L KV +
Sbjct: 51 LLLLLLLTTTTTFPTTHSLSFNITNFDDDTTAIAYEGDGK-STNGSIDLNKVS----YFF 215
Query: 73 STGRALYVAPVHIWDSKTGNVASFITSFSFIIDSPNVNKIADGLAFFLAPVDTQ--PQKP 130
GRA+ P+H++D T + F T F+F I + N DG AF+LAP+ Q P
Sbjct: 216 RVGRAISAQPLHLYDPTTKTLTDFTTRFTFTISAINKTSYGDGFAFYLAPLGYQIPPNSA 395
Query: 131 GGLLGIFD--NDDPSQSNQVVAVEFDT 155
GG G+F+ ++ N VVAVEFDT
Sbjct: 396 GGTFGLFNATTNNNLPQNHVVAVEFDT 476
>TC17134 weakly similar to UP|LEC_BOWMI (P42088) Lectin (Agglutinin) (BMA),
partial (16%)
Length = 741
Score = 62.0 bits (149), Expect = 1e-10
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 27/220 (12%)
Frame = -2
Query: 22 VNKVNSTDYLSFTFNQFTPQQPDLLFQGDALVAPT-GKLQLTKVENDLPVYKSTGRALYV 80
+N + F+ N + D+ G A ++ G LQ+ + + GR LY
Sbjct: 662 INVTKHFYFPDFSLNNNPRLEHDVKLLGSAKLSDQKGALQIPHESQETDLKHLAGRGLYS 483
Query: 81 APVHIWDSKTGNVASFITSFSFIID--------------------SPNVNKIADGLAFFL 120
P+ + D T ASF T+F+F + + +V GL F +
Sbjct: 482 FPIRLLDPSTKTPASFETTFAFQLHNSTTSVSGGGSGGGGVGGAAAADVGGGGSGLTFMI 303
Query: 121 APVDTQPQKPGGLLGIFDNDDPSQSNQVVAVEFDTHFNSNW-DPKSPHIGIDVGSIQSS- 178
+ + G LG+ ND + + VAVEFDT + + DP H+G+++GSI S+
Sbjct: 302 VQDEFTVGRSGPWLGML-NDACENAYKAVAVEFDTRMSPEFGDPNDNHVGVNLGSIISTK 126
Query: 179 --NATSWGAAY--GEVANVFIHYQASTKELTVSLDHPSSK 214
N + +G + G V + +I Y + + + L P+ +
Sbjct: 125 IINVSEFGVSLKDGFVHHAWISYDGPQRRMEIHLGLPNQE 6
>AV765853
Length = 434
Score = 33.9 bits (76), Expect = 0.032
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 206 VSLDHPSSKDTYTVSS-VVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKA 264
V+L SSK + S +DL +L E + VGFSA+TGL ++ VL WS LK
Sbjct: 1 VTLSSSSSKPKKPILSYALDLSPILQESMYVGFSASTGL---LASSHYVLGWS----LKI 159
Query: 265 GGP 267
GP
Sbjct: 160 NGP 168
>BP028770
Length = 451
Score = 28.5 bits (62), Expect = 1.3
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 5 QSQKSLTSLLTLFFLLLVNKVNSTDYLSFTFNQFTPQQPDLLFQG----DALVAPTGKLQ 60
QS S TS LTL L + + SF Q PQQ L+ G ++V + KL
Sbjct: 167 QSSSSYTSSLTLTGKFLYTGSSDREIRSFNRAQLDPQQHSLVLAGKGAVKSIVFHSDKLF 346
Query: 61 LTKVENDLPVYKST 74
++ + V+K T
Sbjct: 347 TAHQDHKIRVWKIT 388
>TC13209 similar to UP|Q9LMW1 (Q9LMW1) F5M15.14, partial (58%)
Length = 750
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 155 THFNSNWDPKSPHIGIDVGSIQSSNATSWGAAYGEVANVFIHYQASTKELTVSLDHPSSK 214
+H N WD S + S SN S+GAA ++ ++ + E SLD +SK
Sbjct: 258 SHPNEIWDLVSCPFDQRIFSTVYSNGESYGAAIWQIPELYGELNSPQLERITSLDTDASK 437
>BP075088
Length = 392
Score = 26.9 bits (58), Expect = 3.9
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = -2
Query: 64 VENDLPVYKSTGRALYVAPVHIWDSKTGNVASFITSFSFII 104
VE D +K T L V P H W+ ++ SFIT F++
Sbjct: 289 VEEDKLDWKMTHEGLPV-PYHHWERTNVHLTSFITKLYFVL 170
>TC10838 weakly similar to PIR|T04232|T04232 pathogenesis-related protein
homolog F14M19.60 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (78%)
Length = 914
Score = 26.6 bits (57), Expect = 5.1
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = +3
Query: 4 FQSQKSLTSLLTLFFLLLVNKVNSTDYLSFTFNQFTPQQ-PD 44
FQ K L+ FLL++ S + T NQ TP++ PD
Sbjct: 186 FQCHKMRAHLILFLFLLVLANPQSASSVPQTHNQLTPKKIPD 311
>AV778116
Length = 543
Score = 25.8 bits (55), Expect = 8.7
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = -1
Query: 230 PEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAG 265
P V +G S L + V+ + + WS E + KAG
Sbjct: 477 PNEVPLGASQNHDLGVESVQVTEAMKWSHEFEGKAG 370
>TC12570
Length = 718
Score = 25.8 bits (55), Expect = 8.7
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = -3
Query: 199 ASTKELTVSLDHPSSKDTYTVSSVVDLKNVLPEYVRVGFSA 239
AST+ L V + S+ D+ + S+ LK + P + + FSA
Sbjct: 179 ASTRSLPVLISGISNMDSVKMLSIRALKPLAPVFWXIAFSA 57
>TC9572 homologue to UP|O63067 (O63067) Aspartokinase-homoserine
dehydrogenase (HDH) (Aspartate kinase) , partial (11%)
Length = 510
Score = 25.8 bits (55), Expect = 8.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 12 SLLTLFFLLLVNKVNSTDYL 31
SLL+LFF L++KV S D L
Sbjct: 340 SLLSLFFFFLISKVCSLDLL 399
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,314,291
Number of Sequences: 28460
Number of extensions: 51084
Number of successful extensions: 280
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of query: 282
length of database: 4,897,600
effective HSP length: 89
effective length of query: 193
effective length of database: 2,364,660
effective search space: 456379380
effective search space used: 456379380
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0106.16