TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0106.15
         (120 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP459593 Pge1 protein [Lotus japonicus]                                61  6e-11
AV769506                                                               37  9e-04
TC17259 weakly similar to UP|Q94KL5 (Q94KL5) BEL1-like homeobox ...    28  0.42
TC9130 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic pro...    27  0.71
TC10223                                                                26  2.1
TC14409 similar to PIR|A84668|A84668 Argonaute (AGO1)-like prote...    25  4.6
CB828260                                                               25  4.6
BI419943                                                               24  7.9

>NP459593 Pge1 protein [Lotus japonicus]
          Length = 633

 Score = 60.8 bits (146), Expect = 6e-11
 Identities = 26/43 (60%), Positives = 33/43 (76%)
 Frame = +1

Query: 68  VFDWAQLVGKNNDFVVIMIRSDYGTLNGKESLTLGCEHGGKFK 110
           + DWA+ VGK N +VVI+IRSDYG+   K  +TLGCE GGK+K
Sbjct: 487 LIDWARCVGKENGYVVIVIRSDYGSAKRKPLITLGCERGGKYK 615


>AV769506 
          Length = 345

 Score = 37.0 bits (84), Expect = 9e-04
 Identities = 15/47 (31%), Positives = 28/47 (58%), Gaps = 1/47 (2%)
 Frame = +1

Query: 68  VFDWAQLVGKNNDFVVIMIRSDYGTLNGKES-LTLGCEHGGKFKPYK 113
           + +W   +   N +V ++ +SDYG    +++ + LGCE  GK+ PY+
Sbjct: 61  LINWVHGIAIENGYVTLITKSDYGGNESRKAYVMLGCEKHGKYVPYR 201


>TC17259 weakly similar to UP|Q94KL5 (Q94KL5) BEL1-like homeobox 4, partial
           (6%)
          Length = 552

 Score = 28.1 bits (61), Expect = 0.42
 Identities = 13/28 (46%), Positives = 14/28 (49%)
 Frame = +1

Query: 92  TLNGKESLTLGCEHGGKFKPYKGKFDIR 119
           T  G  SLTLG  H G   P K  F +R
Sbjct: 313 TTAGDVSLTLGLRHAGNVPPEKSPFSLR 396


>TC9130 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic protein 13
           (Fragment), partial (5%)
          Length = 728

 Score = 27.3 bits (59), Expect = 0.71
 Identities = 16/44 (36%), Positives = 19/44 (42%)
 Frame = +1

Query: 76  GKNNDFVVIMIRSDYGTLNGKESLTLGCEHGGKFKPYKGKFDIR 119
           G   D    +IR  +GT  G  SLTLG  H G        F +R
Sbjct: 235 GGGGDIGSTLIR--FGTTAGDVSLTLGLRHAGNTPEKTNSFSVR 360


>TC10223 
          Length = 957

 Score = 25.8 bits (55), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (63%)
 Frame = +2

Query: 12  VAEGDHIKVDRVKEVDNEVDDMKEWGHI 39
           ++E   +   R+K+V NEV  +K+W +I
Sbjct: 116 ISETGSVDSTRLKQVQNEVSLLKQWKNI 199


>TC14409 similar to PIR|A84668|A84668 Argonaute (AGO1)-like protein
           [imported] - Arabidopsis                thaliana
           {Arabidopsis thaliana;} , partial (9%)
          Length = 674

 Score = 24.6 bits (52), Expect = 4.6
 Identities = 15/59 (25%), Positives = 25/59 (41%)
 Frame = -3

Query: 50  IDDMNALSHVVMKFQNRQVFDWAQLVGKNNDFVVIMIRSDYGTLNGKESLTLGCEHGGK 108
           +DD++ LS   M + N     WA  +G   +  V+++   Y  L      T  C   G+
Sbjct: 171 LDDVSDLSSNFMNWPNWVAAKWA*HIGATTEIAVVLL*YTYDRL-----CTSSCSSSGE 10


>CB828260 
          Length = 557

 Score = 24.6 bits (52), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 91  GTLNGKESLTLGCEHGGKFKPYK 113
           G  + K  + LGCE  GK+ PY+
Sbjct: 162 GNGSRKAYVMLGCEKHGKYVPYR 230


>BI419943 
          Length = 495

 Score = 23.9 bits (50), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (62%)
 Frame = -1

Query: 60  VMKFQNRQVFDWAQLVGKNNDF 81
           V+ FQN + F W  L+ +N +F
Sbjct: 207 VLAFQNFE*FKWFPLISENPEF 142


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,620,672
Number of Sequences: 28460
Number of extensions: 15378
Number of successful extensions: 69
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of query: 120
length of database: 4,897,600
effective HSP length: 79
effective length of query: 41
effective length of database: 2,649,260
effective search space: 108619660
effective search space used: 108619660
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)