BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0105.6
(574 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB827384 71 4e-13
TC10433 52 3e-07
TC8495 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-resp... 46 2e-05
TC12008 similar to GB|BAB13743.1|10281006|AB046955 pseudo-respon... 44 5e-05
AV415674 44 7e-05
TC13544 similar to UP|Q9LU42 (Q9LU42) Emb|CAB45082.1, partial (11%) 39 0.002
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 36 0.019
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 35 0.043
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 34 0.074
TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partia... 33 0.13
BP073830 32 0.28
BP044699 31 0.48
TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), par... 31 0.62
CB828471 30 0.81
BP055416 30 0.81
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p... 30 1.1
TC9564 30 1.1
BP044601 30 1.4
TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g1... 29 1.8
TC16950 similar to UP|RGP1_HUMAN (P46060) Ran GTPase-activating ... 29 2.4
>CB827384
Length = 548
Score = 71.2 bits (173), Expect = 4e-13
Identities = 42/138 (30%), Positives = 79/138 (56%), Gaps = 12/138 (8%)
Frame = +2
Query: 8 GDVERILPQTALRILLVEADDST--RQIIAALLRKCSYKVAAVRDGLKAWETLKNKAHD- 64
G+V R + + + + ++ DDS R++I LL+ S KV V G +A + L +
Sbjct: 86 GEVFRRVLEDSDELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEEN 265
Query: 65 ---------IDLILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLK 115
++LI+T+ +P ++G+ LL I + + IPV++MSS + ++ + +C+ +
Sbjct: 266 SSIGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDRCLEE 445
Query: 116 GAADFLIKPVRRNELRNL 133
GA DFL+KPV+ +++R L
Sbjct: 446 GAEDFLLKPVKLSDVRRL 499
>TC10433
Length = 509
Score = 51.6 bits (122), Expect = 3e-07
Identities = 32/70 (45%), Positives = 41/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 245 ELSKGNPHISTEIRGCSDELLEPSSGAMDLIAAFGNLPKRTIGNHSFHDGS-TAKFEFDT 303
E+SK N +I T+I S EL E + A++LIA N PK T H G+ F+FDT
Sbjct: 109 EMSKDNSNIDTQIHEPSRELAEHAREAINLIATVENPPKHTN*KWCLHGGNYMIMFDFDT 288
Query: 304 QLELSTRGDF 313
QL+LS R DF
Sbjct: 289 QLKLSLRFDF 318
>TC8495 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-response
regulator 3), partial (9%)
Length = 783
Score = 45.8 bits (107), Expect = 2e-05
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +1
Query: 527 DSHRTSQREAALTKFRLKRKDRCYDKKV 554
D RT+ REAAL KFRLKRK+RC++KKV
Sbjct: 55 DEERTALREAALAKFRLKRKERCFEKKV 138
>TC12008 similar to GB|BAB13743.1|10281006|AB046955 pseudo-response
regulator 5 {Arabidopsis thaliana;} , partial (7%)
Length = 496
Score = 44.3 bits (103), Expect = 5e-05
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +3
Query: 503 NGSGGSGSDGNVTSTGVDDELRGTDSHRTSQREAALTKFRLKRK---DRCYDKKV 554
NG G+ G+ + +G + + D ++ SQR+AALTKFR KRK +RC+ KKV
Sbjct: 18 NGLTGNSXSGDASGSGSANRV---DQNKASQRQAALTKFRQKRKEREERCFHKKV 173
>AV415674
Length = 319
Score = 43.9 bits (102), Expect = 7e-05
Identities = 19/28 (67%), Positives = 23/28 (81%)
Frame = +2
Query: 527 DSHRTSQREAALTKFRLKRKDRCYDKKV 554
D RT+ REAAL KFRLKRK+RC++ KV
Sbjct: 110 DEERTALREAALAKFRLKRKERCFENKV 193
>TC13544 similar to UP|Q9LU42 (Q9LU42) Emb|CAB45082.1, partial (11%)
Length = 579
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Frame = +1
Query: 519 VDDELRGTDSH----RTSQREAALTKFRLKRKDRCYDKKV 554
+D RGTD + S+R A+L +FR KRK+RC+DKK+
Sbjct: 457 LDQSNRGTDGNPKRSNLSRRIASLVRFREKRKERCFDKKI 576
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 35.8 bits (81), Expect = 0.019
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = -3
Query: 422 TPKSVCQKESSPFPTSTSSQSNNESMKSEHHHWSDDATFTSDKCENDQSNLDCAVNDSSA 481
T S SS P+S+SS S++ S S S ++ TS SNL C++N SSA
Sbjct: 308 TSSSSSSSSSSSSPSSSSSSSSSSSSTS-----SSTSSSTSSYS*TSASNLFCSLNGSSA 144
Query: 482 TRQSSSTSF---YHDSANHSSSGVNGSGGS 508
+ TSF DS +S G + S S
Sbjct: 143 D*EDLGTSFRFLVMDSLTMASFGDSWSEAS 54
Score = 27.3 bits (59), Expect = 6.9
Identities = 21/80 (26%), Positives = 36/80 (44%), Gaps = 1/80 (1%)
Frame = -3
Query: 439 SSQSNNESMKSEHHHWSDDATFTSDK-CENDQSNLDCAVNDSSATRQSSSTSFYHDSANH 497
+S S ++S W D A+ C + + SS++ S+STS S++
Sbjct: 458 TSSSATLRIRSATSRWLDAASARRLMICSFPMGSRSFWIGSSSSSSASASTSSSSSSSSS 279
Query: 498 SSSGVNGSGGSGSDGNVTST 517
SSS + S S S + +S+
Sbjct: 278 SSSPSSSSSSSSSSSSTSSS 219
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 34.7 bits (78), Expect = 0.043
Identities = 32/110 (29%), Positives = 48/110 (43%)
Frame = +2
Query: 397 ATGVSFDNVSTGDGDVFPSMLYTQLTPKSVCQKESSPFPTSTSSQSNNESMKSEHHHWSD 456
AT + F + + D F L L P K SSP PTSTS+ S + S S
Sbjct: 509 ATMMDFFSSTEFHSDPFRGELMEVLEPFI---KSSSPTPTSTSTFSPSSS--------SS 655
Query: 457 DATFTSDKCENDQSNLDCAVNDSSATRQSSSTSFYHDSANHSSSGVNGSG 506
++ +S + S+L C+ +S S T F+ D + S + V +G
Sbjct: 656 SSSSSSPSPSSSNSSLPCSSPPNSFYSSPSVTPFFSDGCSTSMTHVFANG 805
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 33.9 bits (76), Expect = 0.074
Identities = 22/71 (30%), Positives = 35/71 (48%)
Frame = -3
Query: 419 TQLTPKSVCQKESSPFPTSTSSQSNNESMKSEHHHWSDDATFTSDKCENDQSNLDCAVND 478
T TP S SS FP S+S+ +++ S S +S ++ + D + C V
Sbjct: 544 TTTTPSSSSSSSSSSFPCSSSTTTSSSSSSSSP--FSSSSSSSCACSTRDLPRVGCGVCS 371
Query: 479 SSATRQSSSTS 489
SS++ SSS+S
Sbjct: 370 SSSSSSSSSSS 338
>TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partial (6%)
Length = 520
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/65 (24%), Positives = 32/65 (48%), Gaps = 2/65 (3%)
Frame = +3
Query: 63 HDIDLILTEVDLPSISGFSLLTLI--TDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADF 120
H DLIL + +P + G+ I ++ HIP++ ++++ +C+ G +
Sbjct: 15 HPYDLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVGMDAY 194
Query: 121 LIKPV 125
L KP+
Sbjct: 195 LTKPI 209
>BP073830
Length = 528
Score = 32.0 bits (71), Expect = 0.28
Identities = 13/45 (28%), Positives = 27/45 (59%)
Frame = -3
Query: 79 GFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIK 123
G+ LL I + ++IPV++ S + +S + KC+ +G +F ++
Sbjct: 475 GYDLLKEIKESSSLRYIPVVIRSFENVLSRINKCLEEGVEEFFLE 341
>BP044699
Length = 522
Score = 31.2 bits (69), Expect = 0.48
Identities = 28/89 (31%), Positives = 42/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 470 SNLDCAV-NDSSATRQSSSTSFYHDSANHSSSGVNGSGGSGSDGNVTSTGVDDELRGTDS 528
S+LD V D +A S Y +S++ SSG+ SGG G G+D
Sbjct: 127 SSLDVGVVTDGNAVLDMS----YLNSSD--SSGMVVSGGGGRQPATQLCGMD-------- 264
Query: 529 HRTSQREAALTKFRLKRKDRCYDKKVLQP 557
REA + ++R KRK+R ++K + P
Sbjct: 265 -----REARVLRYREKRKNRKFEKTIFHP 336
>TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), partial (37%)
Length = 1779
Score = 30.8 bits (68), Expect = 0.62
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +2
Query: 428 QKESSPFPTSTSSQSNN----ESMKSEHHHWSDDATFTSDKCENDQSNLDCAVNDSSATR 483
Q+ +P PT+ QSNN + E ++D D E +Q A +S +
Sbjct: 158 QQPPNPVPTTDLDQSNNTMAVDEEPEEQDQETEDQPQIDDAVEEEQDPEAPATTESEPQQ 337
Query: 484 QSSSTSFYHDSANHSSSGVNGSGGSGSDGNVTSTGVDDE 522
Q + D+ N SS+ + S S N ++ ++E
Sbjct: 338 QQETLEDNADAPNESSAAA-AAAASESVANGSNNNEEEE 451
>CB828471
Length = 525
Score = 30.4 bits (67), Expect = 0.81
Identities = 22/94 (23%), Positives = 45/94 (47%)
Frame = +1
Query: 128 NELRNLWQHVWRRQTITKPPQKLTLAHNNKLDAAIENKPASNDSTGSVASTQKNNETSEA 187
NE++N+W +++ + QK T N LDA+ NK A + + +E +
Sbjct: 184 NEIKNVWHTHLKKRLQPQTKQKQT---NLDLDASKSNKDAKKE--------HQEDEGPRS 330
Query: 188 QSTCTSPILGAESGSMENMQDATQLKSSSNLSDI 221
C+S + S +M ++ +++ + S+N D+
Sbjct: 331 PQQCSS----SNSDNMSSLTNSSSIAPSTNHDDM 420
>BP055416
Length = 500
Score = 30.4 bits (67), Expect = 0.81
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 66 DLILTEVDLPSISGFSLLTLITDHDFCK--HIPVIMMSSNDSVSMVFKCMLKGAADFLIK 123
DL+L + +P + G+ I + HIP++ ++++ KC+ G +L K
Sbjct: 391 DLVLMDCQMPKMDGYEATKEIRKSEVGTGLHIPIVALTAHAMSCDEAKCLGVGMDAYLTK 212
Query: 124 PVRRNELRNLWQHVWRRQT 142
P+ + + V RR T
Sbjct: 211 PIDFKLMESTILSVTRRTT 155
>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(57%)
Length = 1185
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/115 (21%), Positives = 49/115 (41%), Gaps = 1/115 (0%)
Frame = +1
Query: 441 QSNNESMKSEHHHWSDDATFTSDKCENDQSN-LDCAVNDSSATRQSSSTSFYHDSANHSS 499
QS ++ EHH+ +ND +N +D + A ++ + ++ S+
Sbjct: 601 QSQSKITTIEHHY------------DNDANNQIDFPTSKPFAHNYNAKSHYHAVSSPSME 744
Query: 500 SGVNGSGGSGSDGNVTSTGVDDELRGTDSHRTSQREAALTKFRLKRKDRCYDKKV 554
GV G + S+ + G + REA + ++R KRK+R ++K +
Sbjct: 745 VGVVPDGNAMSEISYCCYGTPAPAVEAVQFSAADREARVLRYREKRKNRRFEKTI 909
>TC9564
Length = 646
Score = 30.0 bits (66), Expect = 1.1
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
Frame = -3
Query: 314 PASEERLMLNHTNASAFSQYSSSKLFSENSP-HESHELCENTNISHRYGGKNQNHNPENT 372
P+ + +L+L +++ S S + S NS H S N+ GG
Sbjct: 497 PSKKYQLLLTSNSSTIHSLNSIT*SPSANSCIHFSRSSSLNSTFPSEVGGF--------- 345
Query: 373 NSMVIGQSGQVKTKFPNSQLGFFPATGVSFDNVSTGDGDVFPSMLYTQLTPKSVCQKESS 432
S+ I SGQ T +S G T S + VFPSM L+P V ++S
Sbjct: 344 -SLTISASGQKMTSAFSSDEGNSGVTNKSSKKRNESSSRVFPSM----LSPTPVMSCDAS 180
Query: 433 PFP 435
P P
Sbjct: 179 PLP 171
>BP044601
Length = 505
Score = 29.6 bits (65), Expect = 1.4
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = -2
Query: 493 DSANHSSSGVNGSGGSGSDGNV-----TSTGVDDELRGTDSHRTSQREAALTKFRLKRKD 547
D + G +G+ G GSDG T G+D LR S L K KRK+
Sbjct: 192 DGKTPITPGFSGAEGGGSDGGAGGGVNTKLGLDQFLRRYTSEDNHSFSKILEKVNRKRKE 13
Query: 548 R 548
R
Sbjct: 12 R 10
>TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1
(AT3g17100/K14A17_22_), partial (43%)
Length = 1108
Score = 29.3 bits (64), Expect = 1.8
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 5/144 (3%)
Frame = +3
Query: 418 YTQLTPKSVCQKESSPFPTSTSSQSNNESMKSEHHHWSDDATFTSDKCE--NDQSNLDCA 475
Y Q+ + SPF S S SN+ S + T K N Q+ D +
Sbjct: 258 YPQIETNPIFISAFSPFMAS-SLISNSPSTGGDRSRDPHRTTMKRKKKSRLNHQNQQDQS 434
Query: 476 VNDSSATRQSSSTSFYHDSANHSSSGVNGSGGSGSDGNVTSTGVDDELRGTDSHRTSQRE 535
+ + R + Y + VNG GGSG G D L RT
Sbjct: 435 -SQPAKWRSQAQQQLYSSKLRQALVRVNGGGGSGK-GKAVRDAADRALAVAARGRTRWSM 608
Query: 536 AALT---KFRLKRKDRCYDKKVLQ 556
A LT K + +++ + K++LQ
Sbjct: 609 AILTNRIKIKFRKQQQQQRKRLLQ 680
>TC16950 similar to UP|RGP1_HUMAN (P46060) Ran GTPase-activating protein 1,
partial (3%)
Length = 643
Score = 28.9 bits (63), Expect = 2.4
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = -3
Query: 471 NLDCAVNDSSATRQSSSTSFYHDSANHSSSGVNGSGG 507
N ++DSS + SSS+S + S++ SSSG + GG
Sbjct: 416 NYCSGLSDSSLSGSSSSSSSFFSSSSSSSSGGSAIGG 306
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.126 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,581,857
Number of Sequences: 28460
Number of extensions: 126885
Number of successful extensions: 810
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of query: 574
length of database: 4,897,600
effective HSP length: 95
effective length of query: 479
effective length of database: 2,193,900
effective search space: 1050878100
effective search space used: 1050878100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0105.6