BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0104.7
(76 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11606 weakly similar to UP|Q9LW29 (Q9LW29) Transport inhibitor... 150 4e-38
TC19916 similar to PIR|T48087|T48087 transport inhibitor respons... 92 2e-20
TC17496 similar to PIR|T48087|T48087 transport inhibitor respons... 91 5e-20
TC12635 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor respon... 89 2e-19
BP036410 59 1e-10
AU088755 42 2e-05
TC15725 similar to UP|MDHG_ARATH (Q9ZP05) Malate dehydrogenase, ... 25 2.7
BP081713 25 3.5
TC15192 similar to UP|O80784 (O80784) Nodulin-like protein, part... 24 4.6
TC8958 24 4.6
TC15146 similar to UP|AAR01764 (AAR01764) Expressed protein, par... 24 4.6
TC9801 homologue to UP|Q8LAC6 (Q8LAC6) Glycine rich protein-like... 24 6.0
TC11642 similar to UP|Q9FHL3 (Q9FHL3) Genomic DNA, chromosome 5,... 24 6.0
TC14166 weakly similar to UP|Q9U929 (Q9U929) Splicing factor pTS... 23 7.8
BP049406 23 7.8
TC20212 23 7.8
TC19159 23 7.8
TC8151 similar to UP|Q9LU80 (Q9LU80) Gb|AAF35409.1, partial (49%) 23 7.8
TC13208 similar to GB|AAM65311.1|21593362|AY087775 microtubule-a... 23 7.8
>TC11606 weakly similar to UP|Q9LW29 (Q9LW29) Transport inhibitor
response-like protein, partial (18%)
Length = 892
Score = 150 bits (379), Expect = 4e-38
Identities = 74/76 (97%), Positives = 74/76 (97%)
Frame = +2
Query: 1 NILNQASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEI 60
NILNQASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEI
Sbjct: 512 NILNQASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEI 691
Query: 61 LTRRSSNIRSVTLKGK 76
LTRR NIRSVTLKGK
Sbjct: 692 LTRRFPNIRSVTLKGK 739
>TC19916 similar to PIR|T48087|T48087 transport inhibitor response protein
TIR1 [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (16%)
Length = 446
Score = 92.0 bits (227), Expect = 2e-20
Identities = 41/71 (57%), Positives = 53/71 (73%)
Frame = +1
Query: 6 ASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRS 65
A P+EVLE V + + KDRSS+SLVC+ WY ER RR+VF+GNCY+VSPE++ +R
Sbjct: 130 AFSLPEEVLEHVFSFIDNDKDRSSISLVCRSWYEIERCCRRNVFVGNCYAVSPEMVVKRF 309
Query: 66 SNIRSVTLKGK 76
+RSVTLKGK
Sbjct: 310 PRVRSVTLKGK 342
>TC17496 similar to PIR|T48087|T48087 transport inhibitor response protein
TIR1 [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (22%)
Length = 535
Score = 90.5 bits (223), Expect = 5e-20
Identities = 38/68 (55%), Positives = 50/68 (72%)
Frame = +3
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP+EVLE V ++ DR+++SLVCK WY ERW RR VF+GNCY+VSP I+ +R +
Sbjct: 165 FPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEV 344
Query: 69 RSVTLKGK 76
RS+ LKGK
Sbjct: 345 RSIALKGK 368
>TC12635 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor response-like
protein, partial (14%)
Length = 696
Score = 89.0 bits (219), Expect = 2e-19
Identities = 40/68 (58%), Positives = 53/68 (77%)
Frame = -1
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FPDEV+E V V S +DR+++SLVCK WY E+ +R+ VFIGNCYS+SPE L +R ++
Sbjct: 237 FPDEVIEHVFDYVVSHRDRNALSLVCKSWYRIEKSTRKRVFIGNCYSISPERLIQRFPSL 58
Query: 69 RSVTLKGK 76
RS+TLKGK
Sbjct: 57 RSLTLKGK 34
>BP036410
Length = 550
Score = 59.3 bits (142), Expect = 1e-10
Identities = 29/66 (43%), Positives = 41/66 (61%)
Frame = +3
Query: 11 DEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIRS 70
DEVL+ V+ + KDR +VS VCK WY + +R+ V I CY+ +P L RR ++ S
Sbjct: 207 DEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFPHLES 386
Query: 71 VTLKGK 76
+ LKGK
Sbjct: 387 LKLKGK 404
>AU088755
Length = 431
Score = 42.0 bits (97), Expect = 2e-05
Identities = 20/53 (37%), Positives = 30/53 (55%)
Frame = +2
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILT 62
P+ ++ +L +K DR+SVSLVCK YN + R S+ +G + E LT
Sbjct: 53 PEHLVWEILSRIKKTSDRNSVSLVCKRLYNLDNGQRNSLKVGCGMDPADEALT 211
>TC15725 similar to UP|MDHG_ARATH (Q9ZP05) Malate dehydrogenase, glyoxysomal
precursor (mbNAD-MDH) , partial (39%)
Length = 586
Score = 25.0 bits (53), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +1
Query: 31 SLVCKEWYNAERWSRRSVFIGN 52
SL+C + + RWSRR + G+
Sbjct: 265 SLLCNQGTSRSRWSRRDISTGS 330
>BP081713
Length = 425
Score = 24.6 bits (52), Expect = 3.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 1 NILNQASPFPDEVLERVLGMVKSRKDRSSV 30
NI +Q S FP +L RV KSR+ SV
Sbjct: 336 NINHQGSKFPSNLLLRVGHSAKSREPAISV 425
>TC15192 similar to UP|O80784 (O80784) Nodulin-like protein, partial (3%)
Length = 629
Score = 24.3 bits (51), Expect = 4.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 30 VSLVCKEWYNAERWSRRSVFI 50
+S CK W+N +RW F+
Sbjct: 423 LSKYCKTWHNNQRWRYLHFFL 361
>TC8958
Length = 593
Score = 24.3 bits (51), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (58%)
Frame = -1
Query: 24 RKDRSSVSLVCKEWYNAERWSR 45
R DRS + ++ YNAE W R
Sbjct: 485 RSDRSRIRILQPSIYNAEVWRR 420
>TC15146 similar to UP|AAR01764 (AAR01764) Expressed protein, partial (39%)
Length = 612
Score = 24.3 bits (51), Expect = 4.6
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = -3
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKE 36
FPD++ ER+ G R+ ++ V L E
Sbjct: 391 FPDKLNERIKGCTMGRR*KAEVELATSE 308
>TC9801 homologue to UP|Q8LAC6 (Q8LAC6) Glycine rich protein-like, complete
Length = 981
Score = 23.9 bits (50), Expect = 6.0
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +2
Query: 10 PDEVLERVLGMVKSRKDR 27
PDEV+++V KSR DR
Sbjct: 311 PDEVIDKVQEETKSRTDR 364
>TC11642 similar to UP|Q9FHL3 (Q9FHL3) Genomic DNA, chromosome 5, TAC
clone:K19M13, partial (48%)
Length = 1127
Score = 23.9 bits (50), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +2
Query: 43 WSRRSVFIGNCY 54
WS+RS F NCY
Sbjct: 164 WSQRSSFCSNCY 199
>TC14166 weakly similar to UP|Q9U929 (Q9U929) Splicing factor pTSR1, partial
(7%)
Length = 1473
Score = 23.5 bits (49), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 53 CYSVSPEILTRRSS--NIRSVTLKG 75
CY VSP+ TRR + N+R + G
Sbjct: 122 CYKVSPKTFTRRINT*NLREEHISG 196
>BP049406
Length = 566
Score = 23.5 bits (49), Expect = 7.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 36 EWYNAERWSRR 46
+WY A RWSRR
Sbjct: 115 KWYLATRWSRR 83
>TC20212
Length = 455
Score = 23.5 bits (49), Expect = 7.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 46 RSVFIGNCYSVSP 58
R VFI +C+S+SP
Sbjct: 11 RDVFIDHCFSISP 49
>TC19159
Length = 440
Score = 23.5 bits (49), Expect = 7.8
Identities = 11/29 (37%), Positives = 19/29 (64%), Gaps = 4/29 (13%)
Frame = +1
Query: 3 LNQASPFPDEVLERV----LGMVKSRKDR 27
+++ +PFPDE ER+ LG +S+ +R
Sbjct: 205 MSRRAPFPDEKKERLDTVPLGACRSKDER 291
>TC8151 similar to UP|Q9LU80 (Q9LU80) Gb|AAF35409.1, partial (49%)
Length = 1165
Score = 23.5 bits (49), Expect = 7.8
Identities = 8/29 (27%), Positives = 16/29 (54%)
Frame = +1
Query: 17 VLGMVKSRKDRSSVSLVCKEWYNAERWSR 45
+L + S +VS++C W+ + W+R
Sbjct: 118 LLPSLSSLSTHRNVSVLCWVWFGRQAWTR 204
>TC13208 similar to GB|AAM65311.1|21593362|AY087775 microtubule-associated
protein EB1-like protein {Arabidopsis thaliana;},
partial (47%)
Length = 558
Score = 23.5 bits (49), Expect = 7.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 7 SPFPDEVLERVLGMVKSRKDRSSVSL 32
SPFP R++ ++KSR DR +VSL
Sbjct: 437 SPFP-----RIIIVLKSRIDRIAVSL 375
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,386,468
Number of Sequences: 28460
Number of extensions: 16439
Number of successful extensions: 89
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of query: 76
length of database: 4,897,600
effective HSP length: 52
effective length of query: 24
effective length of database: 3,417,680
effective search space: 82024320
effective search space used: 82024320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)
Lotus: description of TM0104.7