TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0104.2
         (456 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8310 UP|Q9SPM8 (Q9SPM8) Nod factor binding lectin-nucleotide p...   907  0.0
AV421159                                                              174  3e-44
TC17108 homologue to UP|Q84UD8 (Q84UD8) Apyrase-like protein, pa...   103  6e-23
TC14851 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, par...    27  7.0
TC11296 weakly similar to UP|Q9LMB9 (Q9LMB9) F14D16.24, partial ...    27  7.0
TC18603 similar to UP|Q9SJF1 (Q9SJF1) T27G7.9, partial (15%)           27  9.1
TC8323 weakly similar to UP|Q8R419 (Q8R419) Endoribonuclease Dic...    27  9.1

>TC8310 UP|Q9SPM8 (Q9SPM8) Nod factor binding lectin-nucleotide
           phosphohydrolase, complete
          Length = 1489

 Score =  907 bits (2345), Expect = 0.0
 Identities = 456/456 (100%), Positives = 456/456 (100%)
 Frame = +1

Query: 1   MDFLISLMTFVFMLMPAISSSQYLGNNILMNRKILLPKNQEPVTSYAVIFDAGSTGSRVH 60
           MDFLISLMTFVFMLMPAISSSQYLGNNILMNRKILLPKNQEPVTSYAVIFDAGSTGSRVH
Sbjct: 43  MDFLISLMTFVFMLMPAISSSQYLGNNILMNRKILLPKNQEPVTSYAVIFDAGSTGSRVH 222

Query: 61  VYNFDQNLDLLPVENELEFYDSVKPGLSSYAANPEEAAESLIPLLKEAENVVPVSQQPNT 120
           VYNFDQNLDLLPVENELEFYDSVKPGLSSYAANPEEAAESLIPLLKEAENVVPVSQQPNT
Sbjct: 223 VYNFDQNLDLLPVENELEFYDSVKPGLSSYAANPEEAAESLIPLLKEAENVVPVSQQPNT 402

Query: 121 PVKLGATAGLRLLEGNAAENILQAVRDMLSNRSALNVQSDAVSILDGTQEGSYLWVTINY 180
           PVKLGATAGLRLLEGNAAENILQAVRDMLSNRSALNVQSDAVSILDGTQEGSYLWVTINY
Sbjct: 403 PVKLGATAGLRLLEGNAAENILQAVRDMLSNRSALNVQSDAVSILDGTQEGSYLWVTINY 582

Query: 181 LLGKLGKRFTKTVGVVDLGGGSVQMTYAVSRNTAKNAPKVPEGEDPYIKKLVLQGKKYDL 240
           LLGKLGKRFTKTVGVVDLGGGSVQMTYAVSRNTAKNAPKVPEGEDPYIKKLVLQGKKYDL
Sbjct: 583 LLGKLGKRFTKTVGVVDLGGGSVQMTYAVSRNTAKNAPKVPEGEDPYIKKLVLQGKKYDL 762

Query: 241 YVHSYLRYGREAFRAEIFKVAGGSANPCILAGFDGAYTYSGAEYKVSAPASGSNLNQCRK 300
           YVHSYLRYGREAFRAEIFKVAGGSANPCILAGFDGAYTYSGAEYKVSAPASGSNLNQCRK
Sbjct: 763 YVHSYLRYGREAFRAEIFKVAGGSANPCILAGFDGAYTYSGAEYKVSAPASGSNLNQCRK 942

Query: 301 IALKALKVNAPCPYQNCTFGGIWNGGGGSGQKNLFLTSSFYYLSEDVGIFVNKPNAKIRP 360
           IALKALKVNAPCPYQNCTFGGIWNGGGGSGQKNLFLTSSFYYLSEDVGIFVNKPNAKIRP
Sbjct: 943 IALKALKVNAPCPYQNCTFGGIWNGGGGSGQKNLFLTSSFYYLSEDVGIFVNKPNAKIRP 1122

Query: 361 VDLKTAAKLACKTNLEDAKSKYPDLYEKDSVEYVCLDLVYVYTLLVDGFGLDPFQEVTVA 420
           VDLKTAAKLACKTNLEDAKSKYPDLYEKDSVEYVCLDLVYVYTLLVDGFGLDPFQEVTVA
Sbjct: 1123VDLKTAAKLACKTNLEDAKSKYPDLYEKDSVEYVCLDLVYVYTLLVDGFGLDPFQEVTVA 1302

Query: 421 NEIEYQDALVEAAWPLGTAIEAISSLPKFERLMYFI 456
           NEIEYQDALVEAAWPLGTAIEAISSLPKFERLMYFI
Sbjct: 1303NEIEYQDALVEAAWPLGTAIEAISSLPKFERLMYFI 1410


>AV421159 
          Length = 410

 Score =  174 bits (441), Expect = 3e-44
 Identities = 85/135 (62%), Positives = 109/135 (79%)
 Frame = +2

Query: 90  YAANPEEAAESLIPLLKEAENVVPVSQQPNTPVKLGATAGLRLLEGNAAENILQAVRDML 149
           YA NP++AAESL+ LL +AE+VVP   +  T V++GATAGLR LEG+A++ ILQAVRD+L
Sbjct: 5   YAQNPQQAAESLVSLLDKAESVVPRELRSKTQVRVGATAGLRALEGDASDRILQAVRDLL 184

Query: 150 SNRSALNVQSDAVSILDGTQEGSYLWVTINYLLGKLGKRFTKTVGVVDLGGGSVQMTYAV 209
             RS+L  ++DAV++LDG QEG++ WVTINYLLG LGK ++KTVGVVDLGGGSVQM YA+
Sbjct: 185 KKRSSLKSEADAVTVLDGVQEGAFQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMAYAI 364

Query: 210 SRNTAKNAPKVPEGE 224
           S   A  APKV +G+
Sbjct: 365 SETEAAQAPKVTDGQ 409


>TC17108 homologue to UP|Q84UD8 (Q84UD8) Apyrase-like protein, partial (16%)
          Length = 573

 Score =  103 bits (257), Expect = 6e-23
 Identities = 48/75 (64%), Positives = 62/75 (82%)
 Frame = +1

Query: 371 CKTNLEDAKSKYPDLYEKDSVEYVCLDLVYVYTLLVDGFGLDPFQEVTVANEIEYQDALV 430
           C+T L DAKS YP + E  ++ Y+C+DLVY YTLLVDGFG+ P+QEVT+  +++Y DALV
Sbjct: 16  CQTKLGDAKSTYPHI-EDGNLPYICMDLVYQYTLLVDGFGIYPWQEVTLVKKVKYDDALV 192

Query: 431 EAAWPLGTAIEAISS 445
           EAAWPLG+AIEA+SS
Sbjct: 193 EAAWPLGSAIEAVSS 237


>TC14851 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, partial (47%)
          Length = 708

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 385 LYEKDSVEYVCLDLVY 400
           LY+K   +YVC+D+VY
Sbjct: 404 LYDKSPCDYVCIDVVY 451


>TC11296 weakly similar to UP|Q9LMB9 (Q9LMB9) F14D16.24, partial (7%)
          Length = 493

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 12/37 (32%), Positives = 19/37 (50%)
 Frame = +1

Query: 347 VGIFVNKPNAKIRPVDLKTAAKLACKTNLEDAKSKYP 383
           VG+   +PNAK+RP   +   KL    +++D     P
Sbjct: 88  VGLLCVQPNAKLRPRMSEVVEKLTVNVDMKDVSISKP 198


>TC18603 similar to UP|Q9SJF1 (Q9SJF1) T27G7.9, partial (15%)
          Length = 714

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 14/44 (31%), Positives = 22/44 (49%)
 Frame = +3

Query: 264 SANPCILAGFDGAYTYSGAEYKVSAPASGSNLNQCRKIALKALK 307
           SA PC+L  +  +Y+YS   YK            C +++ KAL+
Sbjct: 579 SAKPCLLDPYTHSYSYSEVNYK-----------*CLRVSCKALR 677


>TC8323 weakly similar to UP|Q8R419 (Q8R419) Endoribonuclease Dicer
           (Fragment), partial (8%)
          Length = 639

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 18/41 (43%), Positives = 20/41 (47%)
 Frame = +3

Query: 360 PVDLKTAAKLACKTNLEDAKSKYPDLYEKDSVEYVCLDLVY 400
           P D KTA KLA K   E  KS     Y +  V + CL  VY
Sbjct: 375 PADRKTAQKLASK---EILKSLKQ*TYLRTQVMFTCLVCVY 488


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,785,497
Number of Sequences: 28460
Number of extensions: 83411
Number of successful extensions: 423
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of query: 456
length of database: 4,897,600
effective HSP length: 93
effective length of query: 363
effective length of database: 2,250,820
effective search space: 817047660
effective search space used: 817047660
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)