BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.9
(705 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP052828 120 1e-27
CN824962 29 2.2
BP067118 29 2.9
TC19588 29 2.9
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 28 3.8
TC15822 similar to GB|AAC06246.1|2981175|AF053700 deltex {Homo s... 28 5.0
TC16075 28 6.5
TC12330 similar to UP|DME_ARATH (Q8LK56) Transcriptional activat... 28 6.5
AV414855 27 8.5
TC17039 similar to UP|AAR92355 (AAR92355) At1g30300, partial (22%) 27 8.5
>BP052828
Length = 523
Score = 120 bits (300), Expect = 1e-27
Identities = 63/148 (42%), Positives = 94/148 (62%), Gaps = 3/148 (2%)
Frame = +2
Query: 541 PVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVAPWGVVEDV 600
P G +K + DLG+ +N+MP S++ L+ G L+ T +++QLA+RS P GVVEDV
Sbjct: 71 PCTIGDNKYENCMLDLGAGINVMPTSIYNILHPGPLQHTGLIVQLANRSNARPKGVVEDV 250
Query: 601 LVRVGEFEFPVDFVIIDMD---EDSKIPLILGRPFLATSQAKINVGNGTISLRVADEKIT 657
LV+V E FP DF I+DM+ + S+ P+ILGRPF+ T++ KI+V NGT+S+ D
Sbjct: 251 LVQVNELIFPADFYILDMEGETKSSRAPIILGRPFMKTAKTKIDVDNGTMSMEFGDIIAK 430
Query: 658 FTIFDLKPKPVEKNDVFLVEMMDEWSDE 685
F I D P+E + VF + ++ E D+
Sbjct: 431 FNIDDAMKHPLEDHSVFHIGVVSELVDD 514
>CN824962
Length = 673
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +1
Query: 327 RQYSNQRFQSQNSGPQQNQDQGSGNGKKSLEEL-------MENFINKADTSFKNHEAAIK 379
R+ SN + + ++ + Q GK++LE+ MEN + KA AA++
Sbjct: 418 RKLSNDLTELKMLRMEREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVR 597
Query: 380 SLETQVGQMAKQM 392
LET+ ++ +M
Sbjct: 598 RLETENAEIKAEM 636
>BP067118
Length = 554
Score = 28.9 bits (63), Expect = 2.9
Identities = 14/46 (30%), Positives = 23/46 (49%)
Frame = +3
Query: 411 NCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLFPPFPT 456
+CS + + K K+KEK E+++K + E + V PP T
Sbjct: 60 SCSIFCSLSFPSIFSGKPKRKEKSEKEKKKQEEEQEQSVPIPPIQT 197
>TC19588
Length = 489
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -1
Query: 425 ENKKKQKEKEEEKRKVELEN-----KFTKVLFPPFPTNIAKRRLEKQFSK 469
ENK K KE+ K E + TKV FP +PT +A+ L + S+
Sbjct: 459 ENKSKLNCKEQAKIGQSQEGNAHSQRLTKVEFPKYPTTLARFPLPYELSR 310
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 28.5 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = +2
Query: 32 MPRLRTLN------SDLHSST*SVNINMEDLPLKMPMLT*SGSSETAVLHVFPNAELVRL 85
+P+ RTLN L +ST + ++ L S S H+FP+A +
Sbjct: 50 LPKTRTLNLAPFFTRSLSTSTTTTTPSLSALSFLRRYRPLSAVSIPTCRHLFPSARSLST 229
Query: 86 QLFPFSLRDTAEEWLNSQPQGSI 108
+ SL D W N P+ +I
Sbjct: 230 RATTSSLNDPNPNWSNRPPKETI 298
>TC15822 similar to GB|AAC06246.1|2981175|AF053700 deltex {Homo sapiens;} ,
partial (3%)
Length = 1104
Score = 28.1 bits (61), Expect = 5.0
Identities = 21/73 (28%), Positives = 29/73 (38%)
Frame = +2
Query: 463 LEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRRLSEENEIIELTEECSA 522
LEK F+ S +K+ P E +K KE + K ++ + A
Sbjct: 503 LEKAFTTAASKLEKIGYAGPVDSETETASLESKVAKETIDLKE--------VKRVDHILA 658
Query: 523 ILQRKLPPKRKDP 535
LQRKLPP P
Sbjct: 659 SLQRKLPPAPPPP 697
>TC16075
Length = 601
Score = 27.7 bits (60), Expect = 6.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -1
Query: 258 ISNVDSIHCGTCGGPHASEECGTYFDEEVKVLGNSQNNPYSNTYNLG 304
IS + +I G CG H +E + VL Q N SNTY G
Sbjct: 493 ISQMSTIQYGNCG*AHIQKELTYPVSRSLLVLILPQPNIVSNTYR*G 353
>TC12330 similar to UP|DME_ARATH (Q8LK56) Transcriptional activator DEMETER
(DNA glycosylase-related protein DME), partial (5%)
Length = 480
Score = 27.7 bits (60), Expect = 6.5
Identities = 20/63 (31%), Positives = 30/63 (46%)
Frame = +3
Query: 402 SDTVINPKENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLFPPFPTNIAKR 461
SD + K N I N+E L +NK + +E E K V L + T + P N+++
Sbjct: 186 SDEIPTIKLNMXRICXXNLENLMQNKMELQEGEISKALVALHPEATFIPTPKL-KNVSRL 362
Query: 462 RLE 464
R E
Sbjct: 363 RTE 371
>AV414855
Length = 220
Score = 27.3 bits (59), Expect = 8.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 243 SQQMTTIQRQFQAAKISNVDSIHCGTCGG 271
S Q T +QFQ+ + + + CG GG
Sbjct: 140 SNQCKTWLQQFQSGSLRRISDVRCGAAGG 54
>TC17039 similar to UP|AAR92355 (AAR92355) At1g30300, partial (22%)
Length = 571
Score = 27.3 bits (59), Expect = 8.5
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = -3
Query: 406 INPKENCSAI-----TLRNIEPLGENKKKQKEKEE 435
++ K+ CS TL+NIE +NK KQK+++E
Sbjct: 443 LSDKQGCSVHNLFIQTLQNIEDKKQNKTKQKQQKE 339
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,083,898
Number of Sequences: 28460
Number of extensions: 123231
Number of successful extensions: 718
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of query: 705
length of database: 4,897,600
effective HSP length: 97
effective length of query: 608
effective length of database: 2,136,980
effective search space: 1299283840
effective search space used: 1299283840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0103.9