TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0103.7
         (411 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ...    57  4e-09
AV773507                                                               36  0.013
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti...    28  2.1
TC12773                                                                27  6.2
TC17283 similar to UP|O65760 (O65760) Extensin (Fragment), parti...    27  6.2
TC12862 similar to UP|Q9FFY6 (Q9FFY6) Similarity to nascent poly...    27  6.2

>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
           [imported] - Agrobacterium                tumefaciens
           (strain C58, Dupont) {Agrobacterium tumefaciens;},
           partial (6%)
          Length = 561

 Score = 57.4 bits (137), Expect = 4e-09
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
 Frame = -2

Query: 231 KKKEEKRKPYF*PQDQGRNQFGRTWNPTGGFG-FQGRPGGFNNTPF-CGRCRRNGHRAQE 288
           + K  ++KP+  PQ++G +        +  FG F  RP   + +   C RC + GH A  
Sbjct: 455 RNKSFQKKPFQRPQNRGTSS-----GYSHSFGNFVPRPTQSDTSEIVCHRCSKKGHFANR 291

Query: 289 C--IVVLGGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVG-HPANKGKVFAMTM 345
           C  +V    Q   +TG SG       V   +N  A   P      G  P    +V+ ++ 
Sbjct: 290 CPDLVCWNCQ---KTGHSGKDCTNPKVEAATNAIAARRPAPAANKGKRPVASARVYTVSG 120

Query: 346 EEASESPELIKGMCYVNGFPLKVLYDSGATHSFI 379
            E+  +  LI+ +  VN  PL +L+DSGATHSFI
Sbjct: 119 AESHRADGLIRSVGSVNCKPLTILFDSGATHSFI 18


>AV773507 
          Length = 496

 Score = 35.8 bits (81), Expect = 0.013
 Identities = 24/72 (33%), Positives = 32/72 (44%)
 Frame = +2

Query: 245 DQGRNQFGRTWNPTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGS 304
           DQG    G +    G +G   R G  +    C  C R GHRA++C +  GG    + GGS
Sbjct: 269 DQGYRGGGYSSGGRGSYGAGDRVGQDD----CFECGRPGHRARDCPLAGGGGGRGRGGGS 436

Query: 305 GNPNPTTTVGGG 316
            +  P     GG
Sbjct: 437 LSSRPRYGGSGG 472


>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
          Length = 555

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 12/69 (17%)
 Frame = +2

Query: 233 KEEKRKPYF*PQDQGRNQFGRTWNP------TGGFGFQGRP------GGFNNTPFCGRCR 280
           KEEKRK     + + R+   R+ +P      +  F ++  P       GF+    C  C+
Sbjct: 188 KEEKRKMSSDSRSRSRS---RSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCK 358

Query: 281 RNGHRAQEC 289
           R GH A+EC
Sbjct: 359 RPGHFAREC 385


>TC12773 
          Length = 420

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 276 CGRCRRNGHRAQECIV 291
           C +C+R GH A++C+V
Sbjct: 347 CWKCQRPGHMAEDCLV 394


>TC17283 similar to UP|O65760 (O65760) Extensin (Fragment), partial (16%)
          Length = 513

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 288 ECIVVLGGQSGVQTGGSGNPNPTTTVGGGSN 318
           EC VV GG  G    GSG   P     GG N
Sbjct: 125 ECFVVGGGGGGEGMAGSGGALPLLGNAGGRN 33


>TC12862 similar to UP|Q9FFY6 (Q9FFY6) Similarity to nascent polypeptide
           associated complex alpha chain, partial (20%)
          Length = 381

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 259 GGFGFQGRPGGFNNTPFCGRCRRNGHRAQE--CIVVLGGQSGVQTGGSG 305
           GGFGFQGR GG  +         N   A E  C++ +G   G   G  G
Sbjct: 297 GGFGFQGREGGGES---------NEVLADEPLCVLRVGDGGGTALGEDG 178


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,919,507
Number of Sequences: 28460
Number of extensions: 100439
Number of successful extensions: 529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of query: 411
length of database: 4,897,600
effective HSP length: 92
effective length of query: 319
effective length of database: 2,279,280
effective search space: 727090320
effective search space used: 727090320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)