TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0103.3
         (186 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV408058                                                               30  0.33
BP040731                                                               30  0.33
TC8455 homologue to UP|Q9FUB9 (Q9FUB9) Beta-carotene hydroxylase...    28  0.74
AV765447                                                               28  0.74
TC13682 weakly similar to UP|AAS45124 (AAS45124) WAK-like kinase...    28  1.3
AV768875                                                               27  2.8
TC16158                                                                25  6.2
TC8698 similar to UP|Q8W228 (Q8W228) Cytochrome P450, partial (15%)    25  6.2
AW719918                                                               25  6.2
AV417335                                                               25  6.2
TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete          25  8.2

>AV408058 
          Length = 386

 Score = 29.6 bits (65), Expect = 0.33
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 120 LVSELKLEGKRAGMRSEDVIGSETQLRKEV 149
           L ++LK   KRA   ++DVIG E Q RK++
Sbjct: 150 LATKLKNRRKRADAENKDVIGLELQFRKKI 239


>BP040731 
          Length = 492

 Score = 29.6 bits (65), Expect = 0.33
 Identities = 15/37 (40%), Positives = 23/37 (61%)
 Frame = -2

Query: 120 LVSELKLEGKRAGMRSEDVIGSETQLRKEVAKWINMF 156
           L  +LK   KRA + ++DVIG + Q RK++ K +  F
Sbjct: 353 LAVKLKNRRKRADVENKDVIGLKLQFRKKLVKAMKNF 243


>TC8455 homologue to UP|Q9FUB9 (Q9FUB9) Beta-carotene hydroxylase, partial
           (49%)
          Length = 566

 Score = 28.5 bits (62), Expect = 0.74
 Identities = 17/45 (37%), Positives = 24/45 (52%)
 Frame = +1

Query: 65  SLVVPVNFSNSHFLNNKSDQLNIGEWFLESWLVLDFEKECLGNKI 109
           +L +P+ FS   F           +WFL+S LVL  E +CLG+ I
Sbjct: 133 TLFLPLLFSPMVFFTR--------DWFLDSVLVLV*ESQCLGSPI 243


>AV765447 
          Length = 545

 Score = 28.5 bits (62), Expect = 0.74
 Identities = 11/38 (28%), Positives = 22/38 (56%)
 Frame = -2

Query: 149 VAKWINMFYSFELCKCKNIVICQNLMIILIANAECYKS 186
           ++ WI  F+SFE  +C+N V    L +   +++  ++S
Sbjct: 271 ISSWIECFWSFETRRCENCVPSMRLKVAPGSSSRLFQS 158


>TC13682 weakly similar to UP|AAS45124 (AAS45124) WAK-like kinase, partial
          (14%)
          Length = 406

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 28 ILYGDSTTYRKISMEDGAIVRARWWIDPPCKCHG 61
          I  G  +  ++IS++   +V   WW+D  C C G
Sbjct: 56 IAVGSKSEVKEISLQF-QVVELGWWLDGACNCSG 154


>AV768875 
          Length = 232

 Score = 26.6 bits (57), Expect = 2.8
 Identities = 13/41 (31%), Positives = 17/41 (40%), Gaps = 4/41 (9%)
 Frame = -3

Query: 34  TTYRKISMEDGAIVRARW----WIDPPCKCHGGIDSLVVPV 70
           T  R I ++    V  RW    W  PP  C G   S + P+
Sbjct: 188 TMPRSIKLQSSRTVAKRWARLGWNSPPLTCEGNKISFMSPI 66


>TC16158 
          Length = 708

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 149 VAKWINMFYSFELCKC 164
           +A W + +Y FELC C
Sbjct: 417 LAYWFDGYYCFELCSC 464


>TC8698 similar to UP|Q8W228 (Q8W228) Cytochrome P450, partial (15%)
          Length = 465

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
 Frame = -3

Query: 1   MVDGAIFQ-NEMVDVAI--KKNGLWWMGPTI 28
           +V+GA+++  + V+VA   ++ G WW+ PTI
Sbjct: 241 LVNGAVWEFTQQVEVAYNWQRFGTWWIFPTI 149


>AW719918 
          Length = 506

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 48  RARWWIDPPCKCHGG 62
           RARWW   P K  GG
Sbjct: 190 RARWWPSVPSKAEGG 146


>AV417335 
          Length = 428

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 16/51 (31%), Positives = 23/51 (44%), Gaps = 2/51 (3%)
 Frame = +3

Query: 15 AIKKNGLWWMGPTILYGDST--TYRKISMEDGAIVRARWWIDPPCKCHGGI 63
          A+  N   W  P + + D     + KI +  G IV   +    PCK HGG+
Sbjct: 30 ALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQ-RVPCKKHGGV 179


>TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete
          Length = 3001

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 13/44 (29%), Positives = 19/44 (42%), Gaps = 5/44 (11%)
 Frame = +3

Query: 42  EDGAIVRARWWIDPPCKCHGGIDS-----LVVPVNFSNSHFLNN 80
           E   +V  RWWI P     G  +S     LV+ V +   +  N+
Sbjct: 324 ESSFVVGKRWWIGPAAAVAGSCNSSVKERLVIAVGYLKDYTRNS 455


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,871,152
Number of Sequences: 28460
Number of extensions: 57360
Number of successful extensions: 311
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of query: 186
length of database: 4,897,600
effective HSP length: 85
effective length of query: 101
effective length of database: 2,478,500
effective search space: 250328500
effective search space used: 250328500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)