BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.2
(681 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV410336 36 0.023
TC10531 similar to UP|Q96UV7 (Q96UV7) Endo-1,4-beta-xylanase , ... 35 0.052
TC14842 similar to UP|RK4_TOBAC (O80361) 50S ribosomal protein L... 35 0.052
AV410227 32 0.26
BP065644 32 0.34
TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%) 32 0.44
AV419448 32 0.44
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta... 31 0.58
TC9669 similar to UP|Q9LQA7 (Q9LQA7) F4N2.10, partial (16%) 31 0.58
TC19628 similar to PIR|T49142|T49142 CCR4-associated factor 1-li... 31 0.58
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 31 0.75
TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase... 31 0.75
AV409862 30 0.98
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras... 30 0.98
TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroq... 30 0.98
BI420016 30 1.3
TC12728 30 1.3
TC9129 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic pro... 30 1.3
BP043407 30 1.3
BP036801 30 1.7
>AV410336
Length = 358
Score = 35.8 bits (81), Expect = 0.023
Identities = 21/65 (32%), Positives = 30/65 (45%)
Frame = +1
Query: 464 PLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAH 523
P P P+PK +SS P+ T P+ H + SSP T+S + P PP
Sbjct: 67 PHAPPPPTPNPKSPSSSSPTPTSPSPHSGRN---------SSPATTTFTTSTSTPTPPPP 219
Query: 524 TSTPS 528
+S P+
Sbjct: 220 SSLPA 234
>TC10531 similar to UP|Q96UV7 (Q96UV7) Endo-1,4-beta-xylanase , partial
(6%)
Length = 387
Score = 34.7 bits (78), Expect = 0.052
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 478 NSSEPSGTIPAQHGLVDGSLSRPIVI-SSPRGPNLTSSANAPPPPAHTSTPS 528
+SS PS + PA GS S P+ S+P P+ SS PPPP +T S
Sbjct: 183 SSSPPSSS*PAS*SSWYGSSSNPVPTPSTPPKPSSPSSTTTPPPPRSATTSS 338
>TC14842 similar to UP|RK4_TOBAC (O80361) 50S ribosomal protein L4,
chloroplast precursor (R-protein L4), partial (51%)
Length = 618
Score = 34.7 bits (78), Expect = 0.052
Identities = 27/73 (36%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
Frame = +1
Query: 453 SLLKIQASGKRPLGEEDPR--PSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISS--PRG 508
SL+ IQ P + R PSP R ++S PS + P P V SS P
Sbjct: 163 SLILIQPPSPSPASSQPSRFSPSPARKSASPPSTSKPPHQ--------TPHVPSSTAPSS 318
Query: 509 PNLTSSANAPPPP 521
P +SA APPPP
Sbjct: 319 PTSKTSAAAPPPP 357
>AV410227
Length = 428
Score = 32.3 bits (72), Expect = 0.26
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = +1
Query: 470 PRPSPKRLNSS-----EPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAHT 524
PRP P +SS P T P S P SSP P++T A + PPP+
Sbjct: 145 PRPPPSTASSSATSPTSPLSTSPTTPTPTPPPSSPPSPASSPPPPSMTPPAPSTPPPSSA 324
Query: 525 STP 527
+P
Sbjct: 325 *SP 333
>BP065644
Length = 315
Score = 32.0 bits (71), Expect = 0.34
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 512 TSSANAPPPPAHTSTPSVGRISQLEKTLAELRQEAQLESSVKADQ 556
TSS +A PPP T P + S+ KTL+ L Q+E+SV A Q
Sbjct: 127 TSSLSAVPPPEPTYNPRIKDHSESSKTLSSL----QIETSVYACQ 249
>TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%)
Length = 759
Score = 31.6 bits (70), Expect = 0.44
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +2
Query: 447 VIGDKASLLKIQASGKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSP 506
V+ K LK + K P + P P KR ++P+ +P L +
Sbjct: 47 VVVAKQRQLKCTSQPKYP---KYPPPITKRQQQTKPAARLPPP------PLPTTTTAAPS 199
Query: 507 RGPNLTSSANAPPPPAHTSTP 527
P+ T + N+PPPP+ T P
Sbjct: 200 PSPSTTKTKNSPPPPSPTPKP 262
>AV419448
Length = 382
Score = 31.6 bits (70), Expect = 0.44
Identities = 27/75 (36%), Positives = 34/75 (45%)
Frame = +2
Query: 454 LLKIQASGKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTS 513
LL++ S P P PSP S+PS P H P SP + TS
Sbjct: 2 LLRLSTSPAAPSSSHPP-PSP-----SQPSLPSPPLH---------PPTPPSPTASSWTS 136
Query: 514 SANAPPPPAHTSTPS 528
A+APPP + T+TPS
Sbjct: 137 -ASAPPPSSPTATPS 178
>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
chloroplast precursor , partial (54%)
Length = 627
Score = 31.2 bits (69), Expect = 0.58
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = +3
Query: 498 SRPIVISSPRGPNLTSSANAPPPPAHTSTPS 528
S P SSPR P+ TS + APP P TS S
Sbjct: 114 SPPPETSSPRNPSSTSPSRAPPSPHSTSNLS 206
>TC9669 similar to UP|Q9LQA7 (Q9LQA7) F4N2.10, partial (16%)
Length = 472
Score = 31.2 bits (69), Expect = 0.58
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +3
Query: 468 EDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAHTSTP 527
+ P PSP S G+ P HG G + P S P+G N SS P P+ +TP
Sbjct: 240 KSPPPSPHH-GSGGGHGSTPPSHGGGGGYYNPPSSPSPPKGGNCGSS--PPHDPSTPTTP 410
Query: 528 S 528
S
Sbjct: 411 S 413
>TC19628 similar to PIR|T49142|T49142 CCR4-associated factor 1-like protein
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(30%)
Length = 537
Score = 31.2 bits (69), Expect = 0.58
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 470 PRPSPKRLNSSEPSGTIPAQHGLVDGSLS-RPIVISSPRGPNLTSSANAPPPPAHTSTPS 528
P P+P+ +S + G P + +GS + +SSP P+ +S++AP PP ST +
Sbjct: 176 PCPNPRDRSSPDQCGP-PTSNPNSNGSDP*LMLTLSSPWTPSSPASSSAPTPPTPPSTTA 352
Query: 529 VGRI 532
+ R+
Sbjct: 353 IRRL 364
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 30.8 bits (68), Expect = 0.75
Identities = 23/67 (34%), Positives = 29/67 (42%), Gaps = 6/67 (8%)
Frame = +3
Query: 470 PRPSPKRLN------SSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAH 523
P PSP + SS P+GT P+ S SRP S+P P S +AP +
Sbjct: 288 PSPSPPPTSASPPPPSSTPNGTPPSSSPATTPSPSRP---STPSSPTRASLPSAPGFSSS 458
Query: 524 TSTPSVG 530
TP G
Sbjct: 459 EETPRCG 479
>TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase-like
protein, partial (24%)
Length = 602
Score = 30.8 bits (68), Expect = 0.75
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 479 SSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSS--ANAPPPPAHTSTPS 528
SS S + P H L ++P ++P G N + + A PPPP+ +S+P+
Sbjct: 316 SSSSSSSSPLPHPLPPPPPTKPAPGAAPTGKNASPNPPAAVPPPPSPSSSPA 471
>AV409862
Length = 420
Score = 30.4 bits (67), Expect = 0.98
Identities = 25/84 (29%), Positives = 37/84 (43%), Gaps = 1/84 (1%)
Frame = +3
Query: 509 PNLTSSANAPPPPAHTSTPSVGRISQLEKTLAELRQEAQLES-SVKADQIASTEADLENL 567
P T+S + P PPA TSTPS + KT A S + +ST +L
Sbjct: 135 PTTTNSPSKPEPPA-TSTPSATSSTSASKTAASTPSTPSASSPPPTSPPPSSTTLFAPSL 311
Query: 568 RSDLAKKDDLLSSAKTQAHLDAKA 591
S LA + S+ ++A+ + A
Sbjct: 312 ASTLASRARARSNPSSRAYASSNA 383
>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
precursor , partial (81%)
Length = 1355
Score = 30.4 bits (67), Expect = 0.98
Identities = 22/64 (34%), Positives = 27/64 (41%)
Frame = +2
Query: 470 PRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAHTSTPSV 529
P PSPK + P +RP SSP SSA+AP PP +S+PS
Sbjct: 386 PSPSPKTTSRDSPP--------------TRPSTTSSPAW----SSASAPAPPPPSSSPSS 511
Query: 530 GRIS 533
S
Sbjct: 512 ASFS 523
Score = 27.3 bits (59), Expect = 8.3
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Frame = -2
Query: 496 SLSRPIVISSPR---------GPNLTSSANAPPPPAHTSTPSVGR 531
S S PI IS P + TSS APPPPA + GR
Sbjct: 910 SHSHPISISHPHLLP*TIPEASSDCTSSRTAPPPPASPARSRRGR 776
>TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroquinone
glucosyltransferase (Arbutin synthase) , partial (52%)
Length = 885
Score = 30.4 bits (67), Expect = 0.98
Identities = 26/73 (35%), Positives = 33/73 (44%), Gaps = 3/73 (4%)
Frame = +2
Query: 460 SGKRP-LGEEDPRP--SPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSAN 516
S K P L E P P +P R S+ PS P H S P P LTSS+
Sbjct: 275 SRKTP*LKYESPSPYSAPFR-PSATPSAPSPPPHSSSTSSALTPSTSPENSAPPLTSSSL 451
Query: 517 APPPPAHTSTPSV 529
PPP + +S+ S+
Sbjct: 452 PPPPRSLSSSTSL 490
>BI420016
Length = 559
Score = 30.0 bits (66), Expect = 1.3
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Frame = +2
Query: 466 GEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAHTS 525
G P+P P S S T+ + + P+ SSP P+ + + PP PA
Sbjct: 203 GNPSPKPVPASTPSPPSSPTLTPPPSPPSPTPNAPLSPSSP--PSPPTPPSPPPSPAPNP 376
Query: 526 TP----SVGRISQLEKTLAELRQEAQLESSVKADQIAST 560
TP S S L T A L + L S ++T
Sbjct: 377 TPSATGSTTPSSPLTPTSASLSSPSSLFSPASTSPASTT 493
>TC12728
Length = 266
Score = 30.0 bits (66), Expect = 1.3
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 3/53 (5%)
Frame = +3
Query: 501 IVISSPRG---PNLTSSANAPPPPAHTSTPSVGRISQLEKTLAELRQEAQLES 550
+ +S+P+ P +SS++ PPP + PSV IS KTL EL + ES
Sbjct: 21 LTMSNPKSEAKPEPSSSSSESPPPFDPTQPSVP-ISYPIKTLQELESRSYFES 176
>TC9129 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic protein 13
(Fragment), partial (22%)
Length = 604
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 505 SPRGPNLTSSANAPPPPAHTSTPSVGRISQLEKT 538
+P P ++++ APPPP T+T G+ S + T
Sbjct: 425 TPTTPPSSATSTAPPPPTTTTTKPTGKRSDINAT 526
>BP043407
Length = 472
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 642 LVGPDDPPGFVVERFLTEEH 661
LVGP+DPPGF E FL ++
Sbjct: 178 LVGPNDPPGFNAEYFLAADN 119
>BP036801
Length = 540
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/58 (29%), Positives = 25/58 (42%)
Frame = +2
Query: 473 SPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAHTSTPSVG 530
SP L++ PS HG S P ++++AP PPAH +T + G
Sbjct: 290 SPPTLSALSPS---KPTHGAPPAPSPPTAPSSKPAASTTATTSSAPSPPAHNTTSATG 454
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,203,965
Number of Sequences: 28460
Number of extensions: 195869
Number of successful extensions: 2047
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1988
length of query: 681
length of database: 4,897,600
effective HSP length: 96
effective length of query: 585
effective length of database: 2,165,440
effective search space: 1266782400
effective search space used: 1266782400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0103.2