BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.10
(418 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV779145 36 0.010
TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%) 30 0.076
AV410336 32 0.15
TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroq... 32 0.25
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta... 32 0.25
TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , part... 32 0.25
TC15206 similar to UP|Q9SQK9 (Q9SQK9) Jasmonic acid 1 (Fragment)... 31 0.33
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras... 31 0.43
TC11881 similar to PIR|T48303|T48303 meiosis specific-like prote... 30 0.57
BP036801 30 0.57
AV410227 30 0.74
TC19708 similar to UP|O23522 (O23522) Triacylglycerol lipase hom... 30 0.97
AV778530 30 0.97
AI967491 29 1.3
BP036228 29 1.7
TC16667 similar to UP|O64594 (O64594) F17O7.4 (AT1G70420/F17O7_4... 28 2.2
TC18697 28 2.2
TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22... 28 2.2
TC12805 28 2.2
TC15585 similar to UP|Q9MAX8 (Q9MAX8) Epsilon1-COP, partial (59%) 28 2.8
>AV779145
Length = 417
Score = 36.2 bits (82), Expect = 0.010
Identities = 26/71 (36%), Positives = 30/71 (41%), Gaps = 1/71 (1%)
Frame = +2
Query: 263 PRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPL-GPNLTSSANAPPPPVHTSTLS 321
P PSP + P GT P SL+ P S PL P S AN+PP P S S
Sbjct: 95 PPPSPTTQPTPSPHGTPPHATAPGTASLAAPAATSPPLTSPLSPSPANSPPTPSPPSLSS 274
Query: 322 SGSVSRGFSCS 332
S S C+
Sbjct: 275 PPSPSPTTRCA 307
>TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)
Length = 592
Score = 30.4 bits (67), Expect(2) = 0.076
Identities = 29/108 (26%), Positives = 43/108 (38%), Gaps = 20/108 (18%)
Frame = +3
Query: 228 KKNNVSFPPRINLKGDKASLLRIQA-----------GRK-------RPLGEEDPRPSPKR 269
+K+N PP + +K SL + Q +K +P P P P R
Sbjct: 12 QKHNKHSPPHQSQNQNKTSLFQFQVFTFSSLSFRIRSQKLIK*WLWKPSTHPPPPPHPSR 191
Query: 270 LNSGEPSGTIPA--QHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPV 315
+ +PS T + Q+G L S+ L + S A APPPP+
Sbjct: 192 STTTQPSVTRRSRGQNGNAPSDLVHAPRKSTSLSASSCSLAAAPPPPL 335
Score = 21.6 bits (44), Expect(2) = 0.076
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 313 PPVHTSTLSSGSVSRGFSCSL 333
PP+ +T SGS + CS+
Sbjct: 341 PPLQPATAPSGSSRLSYKCSV 403
>AV410336
Length = 358
Score = 32.3 bits (72), Expect = 0.15
Identities = 20/70 (28%), Positives = 31/70 (43%)
Frame = +1
Query: 257 PLGEEDPRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVH 316
P P P+PK +S P+ T P+ H + SSP T+S + P PP
Sbjct: 67 PHAPPPPTPNPKSPSSSSPTPTSPSPHSGRN---------SSPATTTFTTSTSTPTPPPP 219
Query: 317 TSTLSSGSVS 326
+S ++ S +
Sbjct: 220 SSLPAASSTA 249
>TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroquinone
glucosyltransferase (Arbutin synthase) , partial (52%)
Length = 885
Score = 31.6 bits (70), Expect = 0.25
Identities = 36/122 (29%), Positives = 48/122 (38%), Gaps = 18/122 (14%)
Frame = +2
Query: 229 KNNVSFPPRIN---LKGDKASLLRIQ------------AGRKRP-LGEEDPRP--SPKRL 270
K+ S PP+++ LK ++ RI RK P L E P P +P R
Sbjct: 158 KSPSSSPPKLHRQKLKSPSSNRFRIPFHTFSFLPSTSPTSRKTP*LKYESPSPYSAPFR- 334
Query: 271 NSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVHTSTLSSGSVSRGFS 330
S PS P H S P+ P LTSS+ PPP +S+ S R +
Sbjct: 335 PSATPSAPSPPPHSSSTSSALTPSTSPENSAPPLTSSSLPPPPRSLSSSTSLAWTGRFIA 514
Query: 331 CS 332
S
Sbjct: 515 SS 520
>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
chloroplast precursor , partial (54%)
Length = 627
Score = 31.6 bits (70), Expect = 0.25
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = +3
Query: 291 SRPTVISSPLGPNLTSSANAPPPPVHTSTLS 321
S P SSP P+ TS + APP P TS LS
Sbjct: 114 SPPPETSSPRNPSSTSPSRAPPSPHSTSNLS 206
>TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , partial (42%)
Length = 519
Score = 31.6 bits (70), Expect = 0.25
Identities = 24/72 (33%), Positives = 31/72 (42%), Gaps = 6/72 (8%)
Frame = +2
Query: 257 PLGEEDPRPSPKRLNSGEPSGTIPAQHGLVDGSL--SRPTVISSPLGPNLTSSAN----A 310
P P SP R+ S S + L S S P+ SSP P+ T + +
Sbjct: 155 PTSGSPPSDSPHRVGSSSES----TSNSLASPSTTPSTPSSSSSPTSPSTTKQISTPSPS 322
Query: 311 PPPPVHTSTLSS 322
PPPPV T+ SS
Sbjct: 323 PPPPVATAASSS 358
>TC15206 similar to UP|Q9SQK9 (Q9SQK9) Jasmonic acid 1 (Fragment), partial
(32%)
Length = 554
Score = 31.2 bits (69), Expect = 0.33
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 290 LSRPTVISSPLGPNLTSSANAPPPPVHTSTLSSGSVSRGFSCSLTLTSAQMARMDEVVKQ 349
+SR I SPL + +S PP S +GSV+ S + Q +MD +VK+
Sbjct: 87 ISRTPAIDSPLSTHHHNSRTLFPP----SARPAGSVAHQLFQSSSRPDLQCQKMDHMVKE 254
Query: 350 RGLDNI 355
L N+
Sbjct: 255 ESLSNM 272
>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
precursor , partial (81%)
Length = 1355
Score = 30.8 bits (68), Expect = 0.43
Identities = 23/64 (35%), Positives = 29/64 (44%)
Frame = +2
Query: 263 PRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVHTSTLSS 322
P PSPK + P +RP+ SSP SSA+AP PP +S+ SS
Sbjct: 386 PSPSPKTTSRDSPP--------------TRPSTTSSPAW----SSASAPAPPPPSSSPSS 511
Query: 323 GSVS 326
S S
Sbjct: 512 ASFS 523
>TC11881 similar to PIR|T48303|T48303 meiosis specific-like protein -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(34%)
Length = 631
Score = 30.4 bits (67), Expect = 0.57
Identities = 29/81 (35%), Positives = 39/81 (47%), Gaps = 6/81 (7%)
Frame = +3
Query: 266 SPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPN----LTS--SANAPPPPVHTST 319
+P + PS + PA SL+ T SS + P +TS SAN P PP +S+
Sbjct: 324 TPSSPVTASPSMSPPAPPPTSSMSLNS-TASSSRINPPSARLVTSPPSANPPSPPASSSS 500
Query: 320 LSSGSVSRGFSCSLTLTSAQM 340
S+ S SRGF +S QM
Sbjct: 501 -STSSASRGFMSPSVTSSTQM 560
>BP036801
Length = 540
Score = 30.4 bits (67), Expect = 0.57
Identities = 25/72 (34%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Frame = +2
Query: 266 SPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISS-PLGPNLTSSANAPPPPVHTSTLSSGS 324
SP L++ PS HG S PT SS P ++++AP PP H +T ++GS
Sbjct: 290 SPPTLSALSPS---KPTHGAPPAP-SPPTAPSSKPAASTTATTSSAPSPPAHNTTSATGS 457
Query: 325 VSRGFSCSLTLT 336
S S L T
Sbjct: 458 NSPRISPPLAGT 493
>AV410227
Length = 428
Score = 30.0 bits (66), Expect = 0.74
Identities = 19/57 (33%), Positives = 24/57 (41%), Gaps = 5/57 (8%)
Frame = +1
Query: 263 PRPSPKRLNSG-----EPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPP 314
PRP P +S P T P S P+ SSP P++T A + PPP
Sbjct: 145 PRPPPSTASSSATSPTSPLSTSPTTPTPTPPPSSPPSPASSPPPPSMTPPAPSTPPP 315
>TC19708 similar to UP|O23522 (O23522) Triacylglycerol lipase homolog
(Triacylglycerol lipase like protein), partial (20%)
Length = 588
Score = 29.6 bits (65), Expect = 0.97
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -2
Query: 291 SRPTVISSPLGPNLTSSANAPPPPVHTSTLSSGSVSRGFSCSLTLTSAQ 339
S PT +P G +S N PPP SS S R F +L +TS +
Sbjct: 269 SAPTCEYAPSGVFSSSMLNTPPPTFDFLIFSSTSSLRKFPGTLVITSCE 123
>AV778530
Length = 596
Score = 29.6 bits (65), Expect = 0.97
Identities = 28/74 (37%), Positives = 36/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 348 KQRGLDNISEGAVARVLHAFHCYRRSAQDADKLRSEVVRLRALNSQLAEDREVLAAQLIA 407
K +GL + S G +AR+ H + A D+ LRSE RL L SQL L +
Sbjct: 110 KVQGLSSTS-GDIARL----HIILKQADDS--LRSESTRLSPLFSQLHPSHHTLGFLYVL 268
Query: 408 K---DNSFSKELAE 418
+ NS SKE AE
Sbjct: 269 EAFTSNSISKEQAE 310
>AI967491
Length = 385
Score = 29.3 bits (64), Expect = 1.3
Identities = 26/80 (32%), Positives = 33/80 (40%), Gaps = 3/80 (3%)
Frame = +1
Query: 246 SLLRIQAGRKRPLGEEDPRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISS---PLGP 302
S +IQ K + PS R NS S P +H GS PT S P
Sbjct: 70 STTQIQKSSKPSKTQTSKSPSWSRTNSSPTSP--PTKHSPTTGS--NPTSYPSTGKPSSA 237
Query: 303 NLTSSANAPPPPVHTSTLSS 322
+S+ N+P PPV L+S
Sbjct: 238 TSSSATNSPAPPVTKRGLTS 297
>BP036228
Length = 626
Score = 28.9 bits (63), Expect = 1.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Frame = +3
Query: 291 SRPTVISSPLGPNLTS--------------SANAPPPPVHTSTLSSGSVSRGFSCSLTLT 336
S P+ S+P+ P+LT+ PPPPV +ST S+ + +CS +
Sbjct: 273 SPPSAPSTPMPPSLTNRRPRRNRNSSAARHQVKNPPPPVESSTSSTAASIAPSACSYQID 452
Query: 337 SAQM 340
+++
Sbjct: 453 PSRL 464
>TC16667 similar to UP|O64594 (O64594) F17O7.4 (AT1G70420/F17O7_4), partial
(23%)
Length = 953
Score = 28.5 bits (62), Expect = 2.2
Identities = 21/73 (28%), Positives = 34/73 (45%), Gaps = 2/73 (2%)
Frame = -1
Query: 252 AGRKRPLGEEDPRPSPKRLNSG--EPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSAN 309
+ ++R G P PS R ++ ++HG ++ P+ SSPL T S +
Sbjct: 623 SSQQRR*GSPSPPPSSSRTRKHPCRHCCSVASRHGTSTPWMT-PSSCSSPLSSVTTRSMS 447
Query: 310 APPPPVHTSTLSS 322
P PP+ T+ SS
Sbjct: 446 PPAPPLTTNRQSS 408
>TC18697
Length = 1057
Score = 28.5 bits (62), Expect = 2.2
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = +2
Query: 155 HVYPEVFTHRDGTARFPFYWTQGA 178
HV+ +V H DG A +W QG+
Sbjct: 911 HVFVDVLLHADGDANIFLFWVQGS 982
>TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22K18_140
{Arabidopsis thaliana;}, partial (29%)
Length = 621
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/67 (28%), Positives = 35/67 (51%)
Frame = -3
Query: 264 RPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVHTSTLSSG 323
RP+PK + + PSG++P ++D + P+ S+P G + + +P +S+ SS
Sbjct: 325 RPTPKAVAAAPPSGSMPPP--VLDRAAEFPSE-SNPGGATVNPISTSPSSSSSSSSSSSS 155
Query: 324 SVSRGFS 330
S +S
Sbjct: 154 SSRSSWS 134
>TC12805
Length = 702
Score = 28.5 bits (62), Expect = 2.2
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -2
Query: 263 PRPSPKRLNSGEPSGTI 279
PRPSPK L+SG P+G +
Sbjct: 266 PRPSPKELSSGIPNGIL 216
>TC15585 similar to UP|Q9MAX8 (Q9MAX8) Epsilon1-COP, partial (59%)
Length = 635
Score = 28.1 bits (61), Expect = 2.8
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 271 NSGEPSGTIPAQHGLVDGSLSRPTVISSPL----GPNLTSSANAPPPPVHTSTLSSGSVS 326
+S P TIP H S S T SPL P+L +S N P +TL SGS+
Sbjct: 286 SSSSPRSTIPPLHLSKL*SCSLST---SPLPTTRNPSLPASRNGSPIQRSATTLHSGSLL 456
Query: 327 RGFSCS 332
SC+
Sbjct: 457 VSSSCT 474
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,186,271
Number of Sequences: 28460
Number of extensions: 143811
Number of successful extensions: 1263
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of query: 418
length of database: 4,897,600
effective HSP length: 93
effective length of query: 325
effective length of database: 2,250,820
effective search space: 731516500
effective search space used: 731516500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0103.10