TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0102b.4
         (278 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP084223                                                               80  5e-16
TC14110 homologue to UP|Q9AT55 (Q9AT55) S-adenosyl-L-methionine ...    32  0.16
BP084148                                                               29  1.0
AV769881                                                               27  5.0
TC7975 homologue to UP|Q9AT56 (Q9AT56) S-adenosyl-L-methionine s...    27  5.0
BP038094                                                               26  6.5
TC14170 similar to UP|PSBS_LYCES (P54773) Photosystem II 22 kDa ...    26  8.5
AU089455                                                               26  8.5
TC9455 similar to UP|Q9LKX5 (Q9LKX5) Acyl-CoA oxidase ACX3  (At1...    26  8.5
BF177506                                                               26  8.5
CN825613                                                               26  8.5

>BP084223 
          Length = 347

 Score = 79.7 bits (195), Expect = 5e-16
 Identities = 39/79 (49%), Positives = 56/79 (70%)
 Frame = +3

Query: 110 INRVTWVRCTGIPLHMWTMDCFKHLLLQVGDVIKIDEDTSEFVVLEFSRLLVRTTTLNFI 169
           INR+ +   T        MDCFK+++ Q+GD+I +D  T++F VLEF RL +RTT L+FI
Sbjct: 126 INRINYPGLTN-------MDCFKYMVTQLGDIIMVDPRTTDFSVLEFVRLHIRTTALDFI 284

Query: 170 TLARKILIKGTTYTISIIE 188
           +LARK++I  TTYTI ++E
Sbjct: 285 SLARKVMINETTYTIRVME 341


>TC14110 homologue to UP|Q9AT55 (Q9AT55) S-adenosyl-L-methionine synthetase 
           (S-adenosylmethionine synthetase) (Methionine
           adenosyltransferase) (AdoMet synthetase) , complete
          Length = 1576

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 33/130 (25%), Positives = 57/130 (43%)
 Frame = -2

Query: 89  SKGWRSEFVDNLKPWSSSFAPINRVTWVRCTGIPLHMWTMDCFKHLLLQVGDVIKIDEDT 148
           S G  S    N+ PWS   API+   +V+C   P   W +      +L     +     T
Sbjct: 507 SSGVSSVAYPNICPWSP--APISSGRFVKCP*TP---WAISGLCCSMLTRTLQLSASRPT 343

Query: 149 SEFVVLEFSRLLVRTTTLNFITLARKILIKGTTYTISIIEEGEALLHPNCCCREESSVED 208
           S      F ++++  T  +  TLA  ++   T   + +++  +A L    C R+ SS   
Sbjct: 342 SSETKPMFLQVVL--TIFS*STLALVVISPKTITMLVLVQVSQATLLSGSCSRQASSTAS 169

Query: 209 DVFSGWSLNG 218
           +++S  SL+G
Sbjct: 168 EIWS-QSLSG 142


>BP084148 
          Length = 518

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 18/82 (21%), Positives = 37/82 (44%)
 Frame = -2

Query: 64  VRYLRDDRVLLTNHQESNLVELLQGSKGWRSEFVDNLKPWSSSFAPINRVTWVRCTGIPL 123
           +R L   + ++       L  L  GS G     + NL+    S+ P    + +RCT + +
Sbjct: 469 IRLLPSCQRMIRRRLRMRLTRLSHGSMGTNLLRLMNLRTR*RSWRPFAIPSLLRCTKVQV 290

Query: 124 HMWTMDCFKHLLLQVGDVIKID 145
            MW ++ +  ++L +   + +D
Sbjct: 289 LMWVVEPWMRMVLLLAVEVVLD 224


>AV769881 
          Length = 528

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 14/53 (26%), Positives = 25/53 (46%)
 Frame = -1

Query: 183 TISIIEEGEALLHPNCCCREESSVEDDVFSGWSLNGVTVTPELSESGGEDDDG 235
           +++I+ E    LH N CCR  +      F+ + + GV +  +     G + DG
Sbjct: 237 SLAILAELSGWLHSNACCRMVT------FTEFGIRGVRIREQRQVRVGLEQDG 97


>TC7975 homologue to UP|Q9AT56 (Q9AT56) S-adenosyl-L-methionine synthetase 
           (S-adenosylmethionine synthetase) (Methionine
           adenosyltransferase) (AdoMet synthetase) , complete
          Length = 1564

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
 Frame = -3

Query: 89  SKGWRSEFVDNLKPWSSSFAPINRVTWVRCT-----GIPLHMWTMDCFKHLLLQVGDVIK 143
           S G  S    N+ PWS +     R+    CT     G+   M+T    K L L       
Sbjct: 506 SSGVSSVA*PNM*PWSPAPMSSGRLVKWPCTP*AISGLCCSMFT----KTLHLSASRPTS 339

Query: 144 IDEDTSEFVVLEFSRLLVRTTTLNFITLARKILIKGTTYTISIIEEGEALLHPNCCCREE 203
            D +    +V   SR +   +TL  + ++ K     T   + +++  +A L    C R+ 
Sbjct: 338 SDTNP---IVRHVSRTIFS*STLALVVISPK-----TMTMLVLVQVSQATLLSGSCSRQA 183

Query: 204 SSVEDDVFSGWSLNG 218
           SS   +++S  SL+G
Sbjct: 182 SSTASEIWS-HSLSG 141


>BP038094 
          Length = 571

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (61%)
 Frame = +3

Query: 178 KGTTYTISIIEEGEALLHPNCCCREESSV 206
           +  T+ + I +E   LL P CC +EES+V
Sbjct: 405 RARTHNMRIPKELLCLLGPLCCLKEESTV 491


>TC14170 similar to UP|PSBS_LYCES (P54773) Photosystem II 22 kDa protein,
           chloroplast precursor (CP22), partial (81%)
          Length = 1201

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +3

Query: 134 LLLQVGDVIKIDEDTSEFVVLEFSRLLVRTTTLNFITL-ARKILIKGTTYTISIIEEGEA 192
           L+  V     +D      + L+  RL  + + L+F  L +   L    T+T   + + +A
Sbjct: 153 LMSSVSSSYSVDLKKDPLLHLQSQRLRPKFSQLSFNPLPSNSSLFSSRTFTTLALFKSKA 332

Query: 193 LLHPNCCCREESSVEDDVFSGWSLNGVTVTPEL 225
              P    +++  VED VF      G T   EL
Sbjct: 333 KAPPPKVVKQKPKVEDGVFGTSGGIGFTKQNEL 431


>AU089455 
          Length = 595

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 9   SKVDRGRMTALELWSGPEIPKEE 31
           S VD+GR  + EL + PE+ KEE
Sbjct: 214 SSVDKGRTDSKELITVPEMDKEE 282


>TC9455 similar to UP|Q9LKX5 (Q9LKX5) Acyl-CoA oxidase ACX3  (At1g06290) ,
           partial (50%)
          Length = 1361

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 193 LLHPNCCCREESSVE 207
           L++  CCCREE S E
Sbjct: 872 LVNTECCCREERSAE 916


>BF177506 
          Length = 447

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 224 ELSESGGEDDDGLWPVETKSQHDLQG----SPNHSLG 256
           E  E+GG+D +GL  ++   QH LQG    SP   LG
Sbjct: 76  E*EEAGGDDGEGLAYLQGGLQHLLQGFQDPSPYAELG 186


>CN825613 
          Length = 257

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 234 DGLWPVETKSQHDLQGSPNHSLGDNKNPRSNT 265
           D L+PV+   QH ++  PNH+   ++  R +T
Sbjct: 243 DQLYPVQMYIQHHVEIFPNHNDHQDQTTRDHT 148


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,506,702
Number of Sequences: 28460
Number of extensions: 81177
Number of successful extensions: 417
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of query: 278
length of database: 4,897,600
effective HSP length: 89
effective length of query: 189
effective length of database: 2,364,660
effective search space: 446920740
effective search space used: 446920740
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)