BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0102a.7
(1496 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 180 2e-45
AU089582 111 2e-39
AV427422 145 4e-35
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 101 3e-27
BP055130 104 5e-24
BF177840 99 4e-21
BG662087 92 5e-19
BE122516 91 1e-18
BP054462 87 2e-17
AV410603 75 1e-13
BP085845 61 1e-09
BP046863 60 3e-09
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 51 1e-06
AU251673 47 2e-05
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 45 1e-04
BI418821 43 4e-04
TC18698 39 0.008
TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 39 0.008
TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, par... 37 0.030
TC12574 36 0.039
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 180 bits (456), Expect = 2e-45
Identities = 94/192 (48%), Positives = 117/192 (59%), Gaps = 10/192 (5%)
Frame = -2
Query: 230 KTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTASGSF 289
K K IEAIDN R + + NQGSGGP R+ GR D+ + FQKKP+ RPQ RGT+SG
Sbjct: 560 KAKSIEAIDNLRSR--PAFRPNQGSGGPNRSAPGRFDRNKSFQKKPFQRPQNRGTSSGYS 387
Query: 290 YPTGENAIAPRPLGVSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPKV 349
+ G PRP + C +C++KGH+A+ CP+ L+CWNC K GH +DC PKV
Sbjct: 386 HSFGN--FVPRPTQSDTSEIVCHRCSKKGHFANRCPD--LVCWNCQKTGHSGKDCTNPKV 219
Query: 350 EDAANVVGARRPT----------AGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDS 399
E A N + ARRP A RVY++SG E+ DGLIRS + L LFDS
Sbjct: 218 EAATNAIAARRPAPAANKGKRPVASARVYTVSGAESHRADGLIRSVGSVNCKPLTILFDS 39
Query: 400 GATHSFIDIACA 411
GATHSFID+ACA
Sbjct: 38 GATHSFIDLACA 3
>AU089582
Length = 383
Score = 111 bits (278), Expect(2) = 2e-39
Identities = 50/73 (68%), Positives = 63/73 (85%)
Frame = +2
Query: 1192 AKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTI 1251
AK+Y+ EIV LHGVP SI+SDR +FTSHFW++ ALGT+L++S+A+HPQTDGQ+ERTI
Sbjct: 23 AKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSERTI 202
Query: 1252 QSLEDLLRACVLD 1264
Q LED+LRACV D
Sbjct: 203 QILEDMLRACVXD 241
Score = 70.1 bits (170), Expect(2) = 2e-39
Identities = 29/44 (65%), Positives = 37/44 (83%)
Frame = +3
Query: 1268 SWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDG 1311
SWD+ L L+EF YNNS+ +SI MAP+EALYGRRCR+P+ WF+ G
Sbjct: 252 SWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPIGWFEVG 383
>AV427422
Length = 417
Score = 145 bits (367), Expect = 4e-35
Identities = 65/132 (49%), Positives = 93/132 (70%)
Frame = +1
Query: 1161 KRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSH 1220
K ++++ V+VDRL+K +HF+P+K + + +A ++V E+VRLHGVP SIVSDRDP F S+
Sbjct: 22 KGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMSN 201
Query: 1221 FWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEFTY 1280
FWK L + GTKL++S+AYHP++DGQTE + LE LR + D +SW +P E+ Y
Sbjct: 202 FWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYWY 381
Query: 1281 NNSFHASIGMAP 1292
N S+H S G P
Sbjct: 382 NTSYHVSTGQTP 417
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 101 bits (251), Expect(2) = 3e-27
Identities = 46/80 (57%), Positives = 63/80 (78%)
Frame = +3
Query: 1364 RVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYI 1423
RV+P GV R K KL+P+FIGP++++ERVG V+YR+ALPP LS +H V HVS LRKY+
Sbjct: 3 RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182
Query: 1424 PDPSHIIKEDDIQLRDNLSF 1443
DPSH+I+ +D+QL +LS+
Sbjct: 183 YDPSHVIRHEDVQLDVHLSY 242
Score = 39.3 bits (90), Expect(2) = 3e-27
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +2
Query: 1460 NKQVPLVKVIWNQVTGD-ATWELEEKMKEQYPELF 1493
+K V VKV+W +G+ ATWE E+ M+E+YP LF
Sbjct: 293 SKDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLF 397
>BP055130
Length = 567
Score = 104 bits (260), Expect(2) = 5e-24
Identities = 52/107 (48%), Positives = 69/107 (63%)
Frame = +2
Query: 1163 FDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFW 1222
F I V+VDRL+K HF P + + +A+ +V+ IV+LHG+P +IVSDRD FTS FW
Sbjct: 182 FTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAFW 361
Query: 1223 KALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESW 1269
K + GT L +SS+YHPQTDGQTE + LE LR V ++ W
Sbjct: 362 KHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLW 502
Score = 25.0 bits (53), Expect(2) = 5e-24
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 1273 LPLIEFTYNNSFHASIG 1289
LP E+ YN+SF SIG
Sbjct: 516 LPWAEYCYNSSFQTSIG 566
>BF177840
Length = 410
Score = 99.4 bits (246), Expect = 4e-21
Identities = 54/130 (41%), Positives = 77/130 (58%)
Frame = +2
Query: 1207 SSIVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQ 1266
+SIVSDRD KF SHFW+ L +GTKL S+ HPQTDGQTE ++L LLR+ + +
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 1267 ESWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTE 1326
+ W+ LP IEF YN H++ +P+E +YG TPL L+ + + E
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDLLPMPNTYLLKHKDGKAKAE 370
Query: 1327 KVKQIQEKMR 1336
VK++ EK++
Sbjct: 371 FVKRLHEKIK 400
>BG662087
Length = 373
Score = 92.4 bits (228), Expect = 5e-19
Identities = 47/119 (39%), Positives = 69/119 (57%)
Frame = +1
Query: 615 GRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQK 674
G+ R+ VDY LNK K+ YPLP ID L+D + S +D SGYHQI++ D K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 675 TAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEH 733
TAF T +Y Y +PFG+ NA A + M+R+F + R + V++D++++ S H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>BE122516
Length = 364
Score = 91.3 bits (225), Expect = 1e-18
Identities = 53/117 (45%), Positives = 74/117 (62%), Gaps = 5/117 (4%)
Frame = +2
Query: 469 IGMDWLSHHHVLLDCANKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKEN- 527
+GM+WL+ + L+C K V F G +E ++ K + + G S S ++ A E
Sbjct: 14 VGMNWLTANDATLNCRKKTVTF---GTSEG-DAKRVKRTDKVGKASECESDVLLGALETD 181
Query: 528 ----GIQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAEL 580
G++GI VV+EF DVFPE+V +PP R++EF+ID VPGTGPISIAPYRM+ EL
Sbjct: 182 KSDTGVEGIPVVREFSDVFPEEVSELPPEREVEFSID*VPGTGPISIAPYRMSLVEL 352
>BP054462
Length = 422
Score = 87.0 bits (214), Expect = 2e-17
Identities = 47/141 (33%), Positives = 82/141 (57%), Gaps = 1/141 (0%)
Frame = +1
Query: 1281 NNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQS 1340
N++++ S M+P++ALYGR L + +L E + ++ + SQ
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1341 RQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIK-SRKLTPKFIGPYQIIERVGKVAY 1399
++YA+ +RR+++++ GD VFL++ P A K + KL+P++ GPY I+ ++G VAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1400 RIALPPFLSKIHDVLHVSQLR 1420
R+ LP S++H V HVS L+
Sbjct: 361 RLELPAH-SRVHPVFHVSLLK 420
>AV410603
Length = 162
Score = 74.7 bits (182), Expect = 1e-13
Identities = 31/53 (58%), Positives = 43/53 (80%)
Frame = +1
Query: 630 TIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYG 682
T+K+ +P+P +D+L+D+L+G+ FSK+DLRSGYHQI VK ED KT FRT +G
Sbjct: 4 TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>BP085845
Length = 464
Score = 60.8 bits (146), Expect = 1e-09
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Frame = -2
Query: 1376 KSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDI 1435
K RK K IGP++I+E V +AY + +L H VLHV+ L + + D S I + +
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNLYDQSQNICHEGV 242
Query: 1436 QLRDNLSFEVAPMRIEERRIKQLRNKQVPLVKVIWNQVTG-DATWE 1480
L ++ S P+ + + +++ +R K + VKVIW ++G + +WE
Sbjct: 241 XLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104
>BP046863
Length = 580
Score = 60.1 bits (144), Expect = 3e-09
Identities = 32/103 (31%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +1
Query: 1320 LVQQTTEKVKQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAI-KSR 1378
L+++ + +++ + +Q + ++ A+ RR ++++ G+ VFL++ P A K++
Sbjct: 274 LIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQRKNQ 453
Query: 1379 KLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRK 1421
KL+P+F GP++++ERV +VAY + L S++H V H+S L K
Sbjct: 454 KLSPRFYGPFKVLERVVQVAY*LDLXS-ESRVHPVFHLSLLEK 579
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 51.2 bits (121), Expect = 1e-06
Identities = 26/90 (28%), Positives = 49/90 (53%)
Frame = +2
Query: 1216 KFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPL 1275
+FTS + + +G ++R SS HPQT+GQTE + + ++ + +++ W + LP+
Sbjct: 20 QFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPI 199
Query: 1276 IEFTYNNSFHASIGMAPYEALYGRRCRTPL 1305
+ ++YN +SI P+ YG P+
Sbjct: 200 VLWSYNTMPQSSIKETPF*LTYGADTMLPV 289
>AU251673
Length = 413
Score = 47.4 bits (111), Expect = 2e-05
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +2
Query: 109 VDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPKSARAAKEAQFLRLR 168
V+ A++ L G A W+ TW F F++++ P+S R F RL
Sbjct: 23 VELASFQLEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVRDFERLE 202
Query: 169 QG-GMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAV 216
Q GMTV+EY+ L+++ Y + E +RF+ GL L ++V
Sbjct: 203 QAEGMTVSEYSAHFTHLSRYVPY---PLLEEERVKRFVRGLKEYLFKSV 340
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +2
Query: 264 RGDKGRYFQKKPYVRPQGRGTASGSFYPTGENAIAPRPLGVSLDGVT-CFKCNQKGHYAS 322
R D+ Y + PY R RG + + +N P V C C GH AS
Sbjct: 269 RSDRFSY-RDAPYRRDSRRGFSRDNLC---KNCKRPGHFARECPNVAICHNCGLPGHIAS 436
Query: 323 HCPEGPLMCWNCNKPGHLARDC 344
C L CWNC +PGH+A C
Sbjct: 437 ECTTKSL-CWNCKEPGHMASSC 499
>BI418821
Length = 614
Score = 42.7 bits (99), Expect = 4e-04
Identities = 25/77 (32%), Positives = 28/77 (35%), Gaps = 13/77 (16%)
Frame = +2
Query: 281 GRGTASGSFYPTGENAIAPRPL------GVSLDGVTCFKCNQKGHYASHCPE-------G 327
G G G Y G+ R G G C+ C GH A C G
Sbjct: 368 GGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGG 547
Query: 328 PLMCWNCNKPGHLARDC 344
C+NC GHLARDC
Sbjct: 548 GAGCYNCGDTGHLARDC 598
>TC18698
Length = 808
Score = 38.5 bits (88), Expect = 0.008
Identities = 17/55 (30%), Positives = 32/55 (57%)
Frame = -2
Query: 673 QKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYS 727
+KT + +Y Y VMP G+ N + M++IFH + + V V+++D+++ S
Sbjct: 804 KKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKS 640
>TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (9%)
Length = 450
Score = 38.5 bits (88), Expect = 0.008
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 309 VTCFKCNQKGHYASHCPEGPLM-CWNCNKPGHLARDC 344
V C C Q GH + C GPLM C NC GHLA +C
Sbjct: 3 VVCRNCQQLGHMSRDCM-GPLMICHNCGGRGHLAYEC 110
>TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (62%)
Length = 684
Score = 36.6 bits (83), Expect = 0.030
Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Frame = +2
Query: 311 CFKCNQKGHYASHCPEGPL--MCWNCNKPGHLARDCR 345
CF C GH+A C G C+ C GH+ R+C+
Sbjct: 371 CFNCGLDGHWARDCKAGDWKNKCYRCGDRGHVERNCK 481
Score = 30.0 bits (66), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 325 PEGPLMCWNCNKPGHLARDCR 345
P G C+NC GH ARDC+
Sbjct: 353 PPGSGRCFNCGLDGHWARDCK 415
>TC12574
Length = 325
Score = 36.2 bits (82), Expect = 0.039
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 700 FMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEE 732
F + +N IF F + F++VFI+DIL Y+ + EE
Sbjct: 2 FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 100
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,360,185
Number of Sequences: 28460
Number of extensions: 327686
Number of successful extensions: 1595
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of query: 1496
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1394
effective length of database: 1,994,680
effective search space: 2780583920
effective search space used: 2780583920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0102a.7