TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0101.13
         (385 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16197 similar to PIR|H96696|H96696 protein F1N21.16 [imported]...    27  4.4
AU240095                                                               27  4.4
BP052000                                                               27  5.7
BP066335                                                               27  7.5
TC14600 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protei...    26  9.8
TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (...    26  9.8
AV423314                                                               26  9.8

>TC16197 similar to PIR|H96696|H96696 protein F1N21.16 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (35%)
          Length = 582

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 5/48 (10%)
 Frame = -3

Query: 144 SPAIIN-----QTLERSVVEFVEEELSLDTVAEELTAGRVKKWPAKKL 186
           SP + N     +TL +S  E VEEELSLD +    ++G+  KW + ++
Sbjct: 283 SPKLFNLLHVIKTLAKSEGE-VEEELSLDKMEITRSSGKDSKWSSPEV 143


>AU240095 
          Length = 300

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 20/67 (29%), Positives = 25/67 (36%), Gaps = 6/67 (8%)
 Frame = +2

Query: 307 DICSCLYVCLRNSQCHC*T*GHFQGTSRDHQDCCC*ETKG--GCSHPNS----QGGSWSR 360
           D C C   C   S C C   G    +  DH  C C E  G   C+ P +     G   + 
Sbjct: 62  DSCGCAMPCPGGSTCRC--TGSETSSGGDHSTCSCGEHCGCNPCACPKTVAAGTGCKCAS 235

Query: 361 G*ACS*C 367
           G  C+ C
Sbjct: 236 GCRCTSC 256


>BP052000 
          Length = 525

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 29  TASEKKMFSG--KRIPSDVPNVPLDNVSIHAPENAFKWKYVYQRR 71
           T+SEK + S   +R+P  +P +  D V     E +F+W+  YQRR
Sbjct: 196 TSSEKLVASVLFERLPVVIPKI--DPVVYAFQEFSFRWRQQYQRR 324


>BP066335 
          Length = 445

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 15/32 (46%), Positives = 16/32 (49%), Gaps = 2/32 (6%)
 Frame = -3

Query: 311 CLYVCLRNSQCHC*T*GHFQGT--SRDHQDCC 340
           CL      SQCHC    HFQGT  S D+   C
Sbjct: 341 CLSSFAHKSQCHC---HHFQGTLISDDYSVSC 255


>TC14600 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein B13-1-9,
           partial (76%)
          Length = 1052

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 11/40 (27%), Positives = 22/40 (54%)
 Frame = +1

Query: 217 SAMLAKLIYRIGTEIAYDFGNFVFSQTLKHAETCAVKLPI 256
           SA +  +  ++   I +  G+F+F+  LK    C +K+P+
Sbjct: 631 SAHVYDIYVKLHFRIRFRLGDFIFNNDLKPKVKCDLKVPL 750


>TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (15%)
          Length = 1392

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (54%)
 Frame = -1

Query: 260 TDCYHSETSS*YPHC**CSCAQRPSHH 286
           TD YH  + S +PH     C+  PSH+
Sbjct: 735 TDLYHKSSLSSHPH-----CSNHPSHY 670


>AV423314 
          Length = 498

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 19/58 (32%), Positives = 32/58 (54%)
 Frame = -3

Query: 111 LVKEFIVNLSEDVNNSTSPEFRKVFVRGKCVNFSPAIINQTLERSVVEFVEEELSLDT 168
           LVK  I+ L+    + TSP    +  +  C+ FSP   + +L++S + +V  +LSL T
Sbjct: 334 LVK*MIIKLT----SKTSPRILCLPYQYTCI-FSPHTRSPSLQKSSILYVVNKLSLQT 176


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.339    0.147    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,339,548
Number of Sequences: 28460
Number of extensions: 119822
Number of successful extensions: 769
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of query: 385
length of database: 4,897,600
effective HSP length: 92
effective length of query: 293
effective length of database: 2,279,280
effective search space: 667829040
effective search space used: 667829040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 56 (26.2 bits)