BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0100a.5
(201 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8876 homologue to UP|Q7XUF0 (Q7XUF0) OJ991113_30.19 protein, p... 46 5e-06
AV407623 30 0.22
TC8544 30 0.37
BU494312 27 2.4
TC14232 similar to UP|Q08375 (Q08375) Acetyl-CoA acyltransferase... 27 2.4
CN825070 26 4.1
CB826858 26 4.1
BP058658 26 5.4
TC9438 weakly similar to UP|Q8LBI4 (Q8LBI4) Nicotiana lesion-ind... 26 5.4
TC9972 homologue to PIR|T06431|T06431 ribosomal protein L27-5 - ... 25 7.0
TC9818 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, ... 25 9.2
>TC8876 homologue to UP|Q7XUF0 (Q7XUF0) OJ991113_30.19 protein, partial
(48%)
Length = 524
Score = 45.8 bits (107), Expect = 5e-06
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +1
Query: 123 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLLYRKPPTVRTGRLQSFLLMLN 182
LL GFY A ++ G G DV+ A + V E + Y +P ++ + +LN
Sbjct: 7 LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTKFYYSRP------KVTFPIALLN 168
Query: 183 YWKAGICLGLFVDAFKLGS 201
+K G GLF+DAFKL S
Sbjct: 169 NFKMGFTYGLFIDAFKLAS 225
>AV407623
Length = 425
Score = 30.4 bits (67), Expect = 0.22
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
Frame = +3
Query: 14 SSKKP-YTAFSASRVHGCCCEPILSGLTSNAGGKSSHFP 51
SS KP +A S+S + CCC + T+N+ +SH P
Sbjct: 3 SSLKPCLSASSSSSISSCCCSSPMPNKTNNSHPSTSHSP 119
>TC8544
Length = 1278
Score = 29.6 bits (65), Expect = 0.37
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = +1
Query: 17 KPYTAFSASRVHGCCC 32
+PY+AFSAS GCCC
Sbjct: 586 EPYSAFSASLFCGCCC 633
>BU494312
Length = 434
Score = 26.9 bits (58), Expect = 2.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 6 RLSITEHESSKKPYTAFSASRVHGCCCEPILSGLTSNAGGKSSHFPQ 52
R + HE S+ +T+ S+S C C S T+NA + FPQ
Sbjct: 379 RALYSNHERSETAFTSSSSSLCSRCSCS---SHSTANACTEHKSFPQ 248
>TC14232 similar to UP|Q08375 (Q08375) Acetyl-CoA acyltransferase , partial
(96%)
Length = 1703
Score = 26.9 bits (58), Expect = 2.4
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 116 VPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLLYRKPPTVRTGRL 174
+P+K+ + LGF N + L TG+ +++ + + M LY+ PP + T +L
Sbjct: 665 LPLKMLRIALGFQGKNKIRLQLSLTGEL------LLLLLLVNLKMKLYQLPPRL*TQKL 823
>CN825070
Length = 634
Score = 26.2 bits (56), Expect = 4.1
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Frame = +1
Query: 154 AIEGIGMLL--YRKPPTVRTGRLQSFLLMLNYWKAGICLGLFVDAFKL 199
+++G+ L+ R+ TVR R L+L W+ I LGL ++ L
Sbjct: 370 SVKGVSFLIGSCRRGNTVRERRRS*LGLLLRLWRLVILLGLCIETLSL 513
>CB826858
Length = 521
Score = 26.2 bits (56), Expect = 4.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 30 CCCEPILSGLTSNAGGKSSHFPQSGFLGRKAVWKI 64
C C P++ + N G K+S + + +KAV I
Sbjct: 243 CLCNPLILTMAKNLGDKNSSLDMAVLVQQKAVENI 347
>BP058658
Length = 512
Score = 25.8 bits (55), Expect = 5.4
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -1
Query: 76 NGEQQS-LNDTSSSFGGTRLGRILSAGGRQLLDKLNSARKNVPMKIFL--LLLG 126
+G Q+S LN SS+FG +AGG +L+ + S R+ ++L +L+G
Sbjct: 389 DGRQRSKLNGASSAFGAASTASCTNAGGNRLV-RWGSEREKEEKSVWLFRILIG 231
>TC9438 weakly similar to UP|Q8LBI4 (Q8LBI4) Nicotiana lesion-inducing
like, partial (95%)
Length = 788
Score = 25.8 bits (55), Expect = 5.4
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 103 RQLLDKLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLL 162
++L+ KLN+ RKN+ + L++ +ATI+ G +L VV + G +LL
Sbjct: 162 KELIPKLNALRKNLSSNLGLVIPDINIRQVVATIIFLKGVGGIL---FVVGSTLGSYLLL 332
>TC9972 homologue to PIR|T06431|T06431 ribosomal protein L27-5 - garden pea
{Pisum sativum;}, complete
Length = 636
Score = 25.4 bits (54), Expect = 7.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 124 LLGFYTANALATILGQTGDWDVLVAGVVVAAIEG 157
LLG A+ LA +L +GD V + V + IEG
Sbjct: 227 LLGVVLADHLARVLLDSGDETVAIGAVAGSFIEG 126
>TC9818 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, partial
(62%)
Length = 1162
Score = 25.0 bits (53), Expect = 9.2
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 123 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLLYRKPP--TVRTGRLQSFLLM 180
+LLG+ + A + + + G +L G + + I G+G+L + P V GRL + +
Sbjct: 653 ILLGYISNFAFSKLSLKVGWRMMLGVGALPSVILGVGVLAMPESPRWLVMRGRLGDAIKV 832
Query: 181 LN 182
LN
Sbjct: 833 LN 838
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,914,661
Number of Sequences: 28460
Number of extensions: 51702
Number of successful extensions: 288
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of query: 201
length of database: 4,897,600
effective HSP length: 86
effective length of query: 115
effective length of database: 2,450,040
effective search space: 281754600
effective search space used: 281754600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0100a.5