TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0100a.4
         (445 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV419345                                                              264  2e-71
AV413463                                                              118  2e-27
TC14898                                                                32  0.16
BP049442                                                               30  0.80
TC17684                                                                27  6.8

>AV419345 
          Length = 416

 Score =  264 bits (675), Expect = 2e-71
 Identities = 125/138 (90%), Positives = 130/138 (93%)
 Frame = +3

Query: 224 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDSAGKAIGVTSEGETAKCKKVVC 283
           YIYPLYGLGELPQ FARLSAVYGGTYMLNKPECKVEFD  GK +GVTSEGETAKCKKVVC
Sbjct: 3   YIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 182

Query: 284 DPSYLPDKVRNVGKVARAICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHN 343
           DPSYLP KVR VGKVARAICIMSHPIP+TNDS S QVILPQKQLGRKSDMYLFCCSY+HN
Sbjct: 183 DPSYLPSKVRKVGKVARAICIMSHPIPNTNDSPSVQVILPQKQLGRKSDMYLFCCSYSHN 362

Query: 344 VAPKGKYIAFVTTEAETD 361
           VAPKGK+IAFV+TEAETD
Sbjct: 363 VAPKGKFIAFVSTEAETD 416


>AV413463 
          Length = 309

 Score =  118 bits (296), Expect = 2e-27
 Identities = 62/103 (60%), Positives = 76/103 (73%)
 Frame = +2

Query: 161 DLNQVTARQLISKYGLEDDTIDFIGHALALHLDDSYLDTPAKDFVERIKVYAESLARFQG 220
           DL  +    L S +GL+ DTI F+GHALAL+ D+SYL  PA + V ++++YA SLAR  G
Sbjct: 2   DLTTLPMSGLYSHFGLQPDTIAFVGHALALYRDESYLSRPAVETVVKVQLYATSLAR-HG 178

Query: 221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDSA 263
            SPY+YPLYGLGELPQAFARLSAV+GGTYML  P  +V  D A
Sbjct: 179 RSPYLYPLYGLGELPQAFARLSAVHGGTYMLATPVDEVLTDPA 307


>TC14898 
          Length = 582

 Score = 32.3 bits (72), Expect = 0.16
 Identities = 16/18 (88%), Positives = 17/18 (93%)
 Frame = -1

Query: 428 KVLDLSVDLSAASATAEE 445
           +VLDLSVDLSAASAT EE
Sbjct: 345 QVLDLSVDLSAASATTEE 292


>BP049442 
          Length = 494

 Score = 30.0 bits (66), Expect = 0.80
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 5   YDVIVLGTGLKECILSGLLSVDGLKVLHM-DRNDYYGGASTSLNL 48
           +DV V+GTGL   +  GLL  D   V+H+ +R   +GG    L L
Sbjct: 334 FDVSVVGTGLAVIL*LGLLGEDQRLVVHLHERGGSFGGDGEVLEL 200


>TC17684 
          Length = 721

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 13/41 (31%), Positives = 24/41 (57%)
 Frame = +1

Query: 6   DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSL 46
           D +V+G+G    +++G+L+  G KVL  ++  Y    + SL
Sbjct: 475 DAVVVGSGSGGGLIAGILAKAGYKVLVKEKGGYTARNNLSL 597


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,672,770
Number of Sequences: 28460
Number of extensions: 84570
Number of successful extensions: 303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of query: 445
length of database: 4,897,600
effective HSP length: 93
effective length of query: 352
effective length of database: 2,250,820
effective search space: 792288640
effective search space used: 792288640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)