TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0100a.14
         (90 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12769 similar to UP|Q8MRP6 (Q8MRP6) GH07623p, partial (3%)           25  3.1
TC13525 similar to UP|LB30_ARATH (O81323) LOB domain protein 30,...    24  4.0
AW164165                                                               24  5.3
TC19693 similar to UP|O23238 (O23238) Ribosomal protein (AT4G364...    23  6.9
CN825081                                                               23  9.0
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta...    23  9.0
TC10373 similar to AAR04550 (AAR04550) Dual-specificity phosphat...    23  9.0
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)         23  9.0
AU088786                                                               23  9.0

>TC12769 similar to UP|Q8MRP6 (Q8MRP6) GH07623p, partial (3%)
          Length = 469

 Score = 24.6 bits (52), Expect = 3.1
 Identities = 11/15 (73%), Positives = 12/15 (79%)
 Frame = -1

Query: 9   RLKEEITRLGSVQTD 23
           RL EE+TRLGSV  D
Sbjct: 157 RLIEEVTRLGSVNLD 113


>TC13525 similar to UP|LB30_ARATH (O81323) LOB domain protein 30, partial
          (12%)
          Length = 485

 Score = 24.3 bits (51), Expect = 4.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 57 KIVAYDGEL-LLQGVHDNVEITLNPSPAAPAAAV 89
          ++V+  GEL  LQG    +E+   P P+ P A +
Sbjct: 2  QVVSLQGELSYLQGQGATIELHQRPPPSPPQATI 103


>AW164165 
          Length = 343

 Score = 23.9 bits (50), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 51  RAAKKRKIVAYDGELLLQGVHDN 73
           RA+  R+  A +GE  LQ +H N
Sbjct: 178 RASSDRESAAIEGEETLQDIHSN 246


>TC19693 similar to UP|O23238 (O23238) Ribosomal protein
           (AT4G36420/C7A10_940), partial (34%)
          Length = 433

 Score = 23.5 bits (49), Expect = 6.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 32  TLFHDDRCANIFEAL 46
           TLFHDD C   F+ L
Sbjct: 198 TLFHDDICTKSFQFL 154


>CN825081 
          Length = 618

 Score = 23.1 bits (48), Expect = 9.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 58 IVAYDGELLLQGVHDNVEITLNPSPAAP 85
          ++ ++G  LLQ +H+++ I L+    AP
Sbjct: 57 LLPHNGRFLLQSIHEDLVIHLSNRWCAP 140


>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
           chloroplast precursor  , partial (54%)
          Length = 627

 Score = 23.1 bits (48), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 71  HDNVEITLNPSPAAPAAA 88
           H    ++ +P PAAPAAA
Sbjct: 186 HSTSNLSQSPPPAAPAAA 239


>TC10373 similar to AAR04550 (AAR04550) Dual-specificity phosphatase-like
          protein, partial (67%)
          Length = 1018

 Score = 23.1 bits (48), Expect = 9.0
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 35 HDDRCANIFEALVG-TLRAAKKRKIVAY 61
          HDDR  NIF  LV   LRA+   KI+ +
Sbjct: 88 HDDREVNIFLVLVC*ILRASSS*KILGW 5


>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
          Length = 1036

 Score = 23.1 bits (48), Expect = 9.0
 Identities = 10/13 (76%), Positives = 11/13 (83%)
 Frame = +3

Query: 78  LNPSPAAPAAAVN 90
           LNPS AAPAAA +
Sbjct: 153 LNPSTAAPAAAAS 191


>AU088786 
          Length = 411

 Score = 23.1 bits (48), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 65  LLLQGVHDNVEITL 78
           +LLQGVH N+ I L
Sbjct: 176 MLLQGVHPNIPIVL 217


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,113,960
Number of Sequences: 28460
Number of extensions: 10327
Number of successful extensions: 45
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 90
length of database: 4,897,600
effective HSP length: 66
effective length of query: 24
effective length of database: 3,019,240
effective search space: 72461760
effective search space used: 72461760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)