BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098c.1
(78 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9804 similar to UP|Q84RC5 (Q84RC5) Alpha-L-arabinofuranosidase... 151 2e-38
TC15100 weakly similar to UP|BAC99303 (BAC99303) Alpha-L-arabino... 89 1e-19
TC8818 weakly similar to PIR|T48456|T48456 rna binding protein-l... 27 0.90
BP043309 26 1.5
TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , part... 26 1.5
CB827458 25 3.4
TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 prote... 25 3.4
TC16916 24 4.5
TC18354 similar to UP|Q9LI82 (Q9LI82) ABC transporter-like prote... 23 7.6
TC14082 similar to UP|Q7X9A0 (Q7X9A0) RuBisCO activase alpha for... 23 10.0
AV775659 23 10.0
>TC9804 similar to UP|Q84RC5 (Q84RC5) Alpha-L-arabinofuranosidase, partial
(16%)
Length = 658
Score = 151 bits (382), Expect = 2e-38
Identities = 77/78 (98%), Positives = 77/78 (98%)
Frame = +3
Query: 1 VVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAS 60
VVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQ TPIEGAS
Sbjct: 216 VVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQPTPIEGAS 395
Query: 61 TDMKVELPPHSVTSFDLL 78
TDMKVELPPHSVTSFDLL
Sbjct: 396 TDMKVELPPHSVTSFDLL 449
>TC15100 weakly similar to UP|BAC99303 (BAC99303)
Alpha-L-arabinofuranosidase, partial (15%)
Length = 586
Score = 89.0 bits (219), Expect = 1e-19
Identities = 43/79 (54%), Positives = 61/79 (76%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 VVNFGSGSESFRISINGLK-SKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGA 59
VVNFG+ + + +IS+NGL + ++ SGS +TVLT+ANVMDENSFS+P K+VP Q+ ++
Sbjct: 73 VVNFGANTVNLKISLNGLDPNSLQPSGSTRTVLTSANVMDENSFSQPKKVVPIQSLLQNV 252
Query: 60 STDMKVELPPHSVTSFDLL 78
+M V +PPHS +SFDLL
Sbjct: 253 GKEMNVVVPPHSFSSFDLL 309
>TC8818 weakly similar to PIR|T48456|T48456 rna binding protein-like -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(90%)
Length = 1079
Score = 26.6 bits (57), Expect = 0.90
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +3
Query: 15 INGLKSKVKQSGSRKTVLTAANVMDENSF----SEPNKIVPQQTPIEGASTDMKVELPPH 70
+ G K+K S K V TAA D F P + +P QTP+E T + V PH
Sbjct: 66 MGGKKAKKAMQKSLKRV-TAAKPSDGPDFLPLEGGPARKLPVQTPLENKGTVLYVGRIPH 242
>BP043309
Length = 527
Score = 25.8 bits (55), Expect = 1.5
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -3
Query: 2 VNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAS 60
+N SG ++ KSK + KT L ++ +PN + +QT I G S
Sbjct: 510 LNSLSGLIPTQLYSTNCKSKSSTEKTNKTPLPKFHLFSPQKLYDPNNLTSEQTGIVGMS 334
>TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , partial (42%)
Length = 519
Score = 25.8 bits (55), Expect = 1.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2
Query: 2 VNFGSGSESFRISING 17
VNFGSGSE RI I+G
Sbjct: 422 VNFGSGSEVMRI*ISG 375
>CB827458
Length = 566
Score = 24.6 bits (52), Expect = 3.4
Identities = 15/51 (29%), Positives = 24/51 (46%), Gaps = 4/51 (7%)
Frame = +3
Query: 28 RKTVLTAANVMDENSFSEPNKIVPQQTPIEGAST----DMKVELPPHSVTS 74
RKT++ + D+NS P+ + Q+ ST D + LPP +S
Sbjct: 393 RKTLMRSLQEEDDNSGGAPDMVAKVQSQSSLTSTSQFGDNEASLPPSGSSS 545
>TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 protein,
partial (12%)
Length = 431
Score = 24.6 bits (52), Expect = 3.4
Identities = 13/41 (31%), Positives = 16/41 (38%)
Frame = +3
Query: 30 TVLTAANVMDENSFSEPNKIVPQQTPIEGASTDMKVELPPH 70
T A E S S+P P P +ST + PPH
Sbjct: 27 TAAATARSTSEPSQSQPPLQPPSSLPQTSSSTTPPISAPPH 149
>TC16916
Length = 614
Score = 24.3 bits (51), Expect = 4.5
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = +3
Query: 6 SGSESFRISINGLKSKVKQSGSRKTVLT 33
SG++ + + G K KVK S +RK VLT
Sbjct: 87 SGAKEMLVYL-GAKPKVKTSAARKVVLT 167
>TC18354 similar to UP|Q9LI82 (Q9LI82) ABC transporter-like protein, partial
(15%)
Length = 574
Score = 23.5 bits (49), Expect = 7.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 30 TVLTAANVMDENSFSEPNKIVPQQTPIEGASTDMKVELPPHSVTSF 75
T L N+ N+ + P+K + I G S ++ PHS TSF
Sbjct: 320 TTLYPTNIT-ANAATSPHKSSSSKHLIAGKSLTLQCNPFPHSYTSF 186
>TC14082 similar to UP|Q7X9A0 (Q7X9A0) RuBisCO activase alpha form precursor,
partial (90%)
Length = 1667
Score = 23.1 bits (48), Expect = 10.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 37 VMDENSFSEPNKIVPQQTPIE 57
V EN ++ N I+P++ P+E
Sbjct: 1083 VSAENPLADTNTIIPRRCPVE 1021
>AV775659
Length = 439
Score = 23.1 bits (48), Expect = 10.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 5 GSGSESFRISINGLKSKVKQSGSRKT 30
G+GS S + ++G KSKV + S KT
Sbjct: 322 GNGSYSSILEVHGPKSKVLVAFSAKT 399
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.308 0.126 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 972,457
Number of Sequences: 28460
Number of extensions: 7638
Number of successful extensions: 46
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 78
length of database: 4,897,600
effective HSP length: 54
effective length of query: 24
effective length of database: 3,360,760
effective search space: 80658240
effective search space used: 80658240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)
Lotus: description of TM0098c.1