BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098b.3
(287 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP033896 64 2e-11
TC19596 39 0.001
BP069214 38 0.002
TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported]... 27 0.031
AV407204 34 0.033
BP041664 33 0.056
AV421977 27 0.084
BP037648 32 0.12
AV409508 32 0.16
TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase... 32 0.16
BI420177 32 0.16
BP054137 31 0.21
AV412490 31 0.21
NP459593 Pge1 protein [Lotus japonicus] 31 0.21
CB827058 31 0.28
CN825698 30 0.36
BP057299 30 0.36
TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-... 30 0.36
BP028457 29 0.81
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 28 1.4
>BP033896
Length = 551
Score = 64.3 bits (155), Expect = 2e-11
Identities = 34/51 (66%), Positives = 40/51 (77%)
Frame = -3
Query: 237 GLTDREGKPEQEFIGRNKFVKEKVQEKSEDRIEVDISYSTIVIRLNLGQKP 287
GL EGKPE++FI N F+KEKVQEK +D I +D SYST V+RLNLGQKP
Sbjct: 252 GLM*CEGKPERKFIK*NIFMKEKVQEKFKDCIMIDKSYSTNVLRLNLGQKP 100
>TC19596
Length = 499
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/64 (32%), Positives = 31/64 (47%)
Frame = +1
Query: 30 MSVDDIIRYSFSEWVASFSSFFGGSCSLYVELLAKKHGLLLDINLGYRWVICESDSTTVI 89
M + I+R + W++ F + G +L E+ A KHGL L N R CE D ++
Sbjct: 46 MGMGGIVRDAHGAWISGFYAGSLGGDALRAEIAALKHGLTLLWNAHVRRATCEVDCLDIV 225
Query: 90 HLLE 93
LE
Sbjct: 226 EALE 237
>BP069214
Length = 545
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/47 (44%), Positives = 28/47 (58%)
Frame = -2
Query: 59 VELLAKKHGLLLDINLGYRWVICESDSTTVIHLLEALAMPHPLYDVL 105
+ELLA HGL L + G+R VIC+SDST + L+ + P Y L
Sbjct: 397 MELLAMWHGLDLVWDRGFRQVICQSDSTEALALVLGVPPPRHRYAAL 257
>TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(10%)
Length = 498
Score = 26.9 bits (58), Expect(2) = 0.031
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = +2
Query: 132 SHPPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFITEVTHTN 188
SHPPPPPP+ +I GS +++ T +T+ + P++P+ + T T+
Sbjct: 281 SHPPPPPPTNSIPG------PNGSPSSTA*TPKVTSPN-----PVLPMALFTSTSTS 418
Score = 26.2 bits (56), Expect = 6.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 125 SSSSLSLSHPPPPPP 139
S+S+ +L+ PPPPPP
Sbjct: 224 STSTAALASPPPPPP 268
Score = 25.8 bits (55), Expect(2) = 0.031
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +2
Query: 108 PTINDMASQVDKALLSSSSSSLSLSHPPPPPP 139
PT++ S S+S++ S PPPPPP
Sbjct: 176 PTLHFSPSNPSSHSHHSTSTAALASPPPPPPP 271
>AV407204
Length = 432
Score = 33.9 bits (76), Expect = 0.033
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 42 EWVASFSSFF--GGSCSLYVELLAKKHGLLLDINLGYRWVICESDSTTVIHLLEALAMP 98
+WV F S + SCS E LA + GL L + G R ++C SD L++A+A P
Sbjct: 431 KWVNGFISQYLEAASCSFLAEALALRDGLRLAWDNGTRKLVCNSDCK---ELIDAIADP 264
>BP041664
Length = 487
Score = 33.1 bits (74), Expect = 0.056
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 124 SSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVV 164
S SS+ S PPPPPPS T +V I T S S +
Sbjct: 196 SMSSTPSTPEPPPPPPSMTTTPSIV*MIPVCRFTVSRSMTI 318
>AV421977
Length = 535
Score = 26.9 bits (58), Expect(2) = 0.084
Identities = 19/65 (29%), Positives = 26/65 (39%), Gaps = 5/65 (7%)
Frame = +1
Query: 83 SDSTTVIHLLEALAMPH-----PLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPP 137
S STT L P+ P + +P M+S + L+ S S PPPP
Sbjct: 28 SSSTTTTTTTTTLTNPNLTSVFPQHQHNKQP*PPQMSSHTPQTLIPVDSDESSPDSPPPP 207
Query: 138 PPSFT 142
P + T
Sbjct: 208 PATQT 222
Score = 24.3 bits (51), Expect(2) = 0.084
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 134 PPPPPPSFTIATIVVVAIATGSITASNSTVVIT 166
PPPPPPS T + A + T ++++ T
Sbjct: 245 PPPPPPSSTSPSTKTPAASPPPPTKASASTTAT 343
>BP037648
Length = 477
Score = 32.0 bits (71), Expect = 0.12
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 108 PTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITN 167
P+ + M S + L+ SS+ S HPPPPP + +I ++T ++ + T + T
Sbjct: 7 PSTSSMQSPNPISTLAPSSNLSSFRHPPPPPLATSILNPPPTRLSTRRRSSLSETTMRTT 186
Query: 168 T 168
T
Sbjct: 187 T 189
>AV409508
Length = 426
Score = 31.6 bits (70), Expect = 0.16
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 127 SSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHH 173
S+ L PPPPPP ++ + I I+ SN+ + H HHH
Sbjct: 60 SASLLPKPPPPPPLSHTHSLSLNQILDTQISLSNNQIPHLLLHHHHH 200
>TC16883 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase-like
protein, partial (24%)
Length = 602
Score = 31.6 bits (70), Expect = 0.16
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = +1
Query: 111 NDMASQVDKALLSSSSSSLSLSHPPPPPP 139
N +S +L SSSSSS L HP PPPP
Sbjct: 283 NSHSSPPFSSLSSSSSSSSPLPHPLPPPP 369
>BI420177
Length = 444
Score = 31.6 bits (70), Expect = 0.16
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = -3
Query: 126 SSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTV 163
S S + PPP PPS + +VVV A+ S ++S+S++
Sbjct: 160 SVSAPTATPPPSPPSAAVDVVVVVGGASSSSSSSSSSL 47
>BP054137
Length = 474
Score = 31.2 bits (69), Expect = 0.21
Identities = 27/72 (37%), Positives = 32/72 (43%), Gaps = 23/72 (31%)
Frame = +3
Query: 124 SSSSSLSLSHPPPPPPS---------FTIATIV--VVAIATGSITASN--STVVITNT-- 168
S S L L P PPPP+ T ATIV V+ IAT +I S ST V+ +
Sbjct: 219 SPSPLLPLLSPSPPPPTPSSSQQPPRSTTATIVDIVIVIATTTIALSPPFSTTVVASAAV 398
Query: 169 --------HCHH 172
HCHH
Sbjct: 399 AATTTTLHHCHH 434
Score = 26.6 bits (57), Expect = 5.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 135 PPPPPSFTIATIVVVAIATGSIT 157
PPPPP ATIV I +IT
Sbjct: 400 PPPPPRSITATIVDTTIVIATIT 468
>AV412490
Length = 375
Score = 31.2 bits (69), Expect = 0.21
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 133 HPPPPPPSFTIATIVVVAIATGSITASNSTV--VITNTHCHHHPPLM 177
HPPPPPPS I T +I + T + + T + HHP M
Sbjct: 204 HPPPPPPSCKITTSK*QSITSSKNTPIPFAITGIPTANYSSHHPSSM 344
>NP459593 Pge1 protein [Lotus japonicus]
Length = 633
Score = 31.2 bits (69), Expect = 0.21
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 35 IIRYSFSEWVASFSSFFGGSCSLYVELLAKKHGLLLDINLGYRWVICESDSTTVIHLLEA 94
++R S W+++ + + E+LA K G+ +++G+ +V C SD + + L A
Sbjct: 16 VVRDSRGAWLSATLVCYNYGSAFLTEILAVKLGIRHALDIGHIYVFCLSDCSQALQALHA 195
>CB827058
Length = 555
Score = 30.8 bits (68), Expect = 0.28
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 135 PPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFIT---EVTHTNIAP 191
PPPP S + + V + S ++S+S+ +++ +H P++P + + + T P
Sbjct: 145 PPPPLSRRVKSREVTSRYMSSSSSSSSSSSVSSPPRRYHSPIVPRTVNSSKQKSSTIAVP 324
Query: 192 RKHVTSGADKERLVRGTEAGVPKVSLDDVV 221
V ER + G P+ S VV
Sbjct: 325 TPQVKRSQSAERQRQRPRQGTPRPSGAGVV 414
>CN825698
Length = 704
Score = 30.4 bits (67), Expect = 0.36
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 98 PHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPP 139
P P+ +V+N P +DK+ S SS+ + PPPPPP
Sbjct: 49 PIPMAEVINAPP-----DSLDKSPPPSPSSASAPPPPPPPPP 159
>BP057299
Length = 551
Score = 30.4 bits (67), Expect = 0.36
Identities = 16/56 (28%), Positives = 27/56 (47%)
Frame = -2
Query: 104 VLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITAS 159
+ NK ++ + ++ L S SSS PPPPP + + + + A A + AS
Sbjct: 403 IFNKARVSCLGHRLPPKLRSPLSSSPEFDPPPPPPAAVSPPS*ALAAAAAAATAAS 236
>TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-associated
channel homolog (AT3g46740/T6H20_230), partial (10%)
Length = 469
Score = 30.4 bits (67), Expect = 0.36
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +1
Query: 94 ALAMPHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPP 139
A P + + L PT N +A L SS SL SH PPPPP
Sbjct: 55 ARCYPSTVTNPLPLPTKNSLA-------LHSSKPSLPPSHSPPPPP 171
>BP028457
Length = 371
Score = 29.3 bits (64), Expect = 0.81
Identities = 23/80 (28%), Positives = 33/80 (40%)
Frame = +2
Query: 124 SSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFITE 183
SS++ S PPP T A T +TAS+S+ T+T P +PL+
Sbjct: 128 SSATQPSFHRGTPPPTVATPPGKASPATPTTKLTASSSSTSTTST-SPXPTPFLPLWAXS 304
Query: 184 VTHTNIAPRKHVTSGADKER 203
+T T+ T A R
Sbjct: 305 LTSTSSPSATSPTLSAQSRR 364
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 28.5 bits (62), Expect = 1.4
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 121 LLSSSSSSLSLSHPPPPPPS 140
LL +SSS S S+ PPPPPS
Sbjct: 31 LLLHTSSSSSSSYSPPPPPS 90
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,232,808
Number of Sequences: 28460
Number of extensions: 125722
Number of successful extensions: 3481
Number of sequences better than 10.0: 234
Number of HSP's better than 10.0 without gapping: 2344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3019
length of query: 287
length of database: 4,897,600
effective HSP length: 89
effective length of query: 198
effective length of database: 2,364,660
effective search space: 468202680
effective search space used: 468202680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0098b.3