BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098a.6
(626 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase... 735 0.0
CN825301 330 3e-91
TC9804 similar to UP|Q84RC5 (Q84RC5) Alpha-L-arabinofuranosidase... 165 2e-41
AU089495 159 1e-39
TC15100 weakly similar to UP|BAC99303 (BAC99303) Alpha-L-arabino... 95 3e-20
TC14462 weakly similar to GB|BAA97483.1|8885553|AB025604 ripenin... 29 2.0
BG662093 28 3.4
AV773237 28 4.4
TC14368 similar to UP|Q9LLC2 (Q9LLC2) Xyloglucan endotransglycos... 28 5.8
TC16618 28 5.8
BP064999 28 5.8
TC17443 27 7.5
TC9160 similar to UP|Q8H0V0 (Q8H0V0) Isp4 like protein, partial ... 27 9.8
BP076801 27 9.8
TC8268 similar to UP|RS8_ORYSA (P49199) 40S ribosomal protein S8... 27 9.8
TC14457 similar to UP|Q8GTZ1 (Q8GTZ1) bZIP transcription factor,... 27 9.8
>TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase, partial
(73%)
Length = 1636
Score = 735 bits (1897), Expect = 0.0
Identities = 343/503 (68%), Positives = 417/503 (82%), Gaps = 6/503 (1%)
Frame = +3
Query: 9 DQTSTLTVDL-KSAGRPIPETLFGVFYEEINHAGTGGLWAELVNNRGFEAGGTQTPSNIA 67
D +TLTVD +++G+PI ETLFG+F+EEINHAG GGLWAELV+NRGFEAGG PSNI
Sbjct: 129 DLNATLTVDAHETSGKPISETLFGLFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNID 308
Query: 68 PWTIVGKESLVLLQTELSSCFERNKVALRMDVLCDQ-----CPSDGVGVSNPGYWGMNVV 122
PW+I+G ES + ++T+ +SCF+RNK+ALR++VLCD CP+DGVGV NPG+WGMN+
Sbjct: 309 PWSIIGNESFINVETDRTSCFDRNKIALRLEVLCDSKGDNICPADGVGVFNPGFWGMNIE 488
Query: 123 QKKEYKVVFFVKSTGSLDMTISFKKAEDGGILASQNVKASASEVANWKRMELKLVPTASN 182
Q K+YKVVF+V+STGSLD+T+S + G+LAS + SAS+ +NWK++E L A+N
Sbjct: 489 QGKKYKVVFYVRSTGSLDLTVSLTGSN--GVLASNVITGSASDFSNWKKVETLLEAKATN 662
Query: 183 PKATLHLTTTQKGVIWLDQVSAMPVDTFKGHGFRTDLVNMVLELKPAFIRFPGGCFIEGQ 242
+ L LTTT KGVIWLDQVSAMP+DT+KG GFR++LV M+ +LKP FIRFPGGCF+EG+
Sbjct: 663 HNSRLQLTTTAKGVIWLDQVSAMPLDTYKGRGFRSELVGMLADLKPRFIRFPGGCFVEGE 842
Query: 243 TLRNAFRWKDSVGPWEERPGHFGDVWGSWTDEGLGYFEGLQLAEDIGAKPIWVFNNGISH 302
LRNAFRWK+S+GPWEERPGHFGDVW WTD+GLGYFE LQLAED+GA PIWVFNNG+SH
Sbjct: 843 WLRNAFRWKESIGPWEERPGHFGDVWKYWTDDGLGYFEFLQLAEDLGALPIWVFNNGVSH 1022
Query: 303 TDQIDTSVITPFVQEALDGIEFARGPATSKWGSLRKSMGHPEPFDLKYVAIGNEDCGKKN 362
D++DTS + PFVQEALDGIEFARG TSKWGS+R SMGHPEPF+LKYVA+GNEDCGKKN
Sbjct: 1023NDEVDTSAVLPFVQEALDGIEFARGDPTSKWGSIRASMGHPEPFNLKYVAVGNEDCGKKN 1202
Query: 363 YLGNYLAFYNAIRKAYPDIQMISNCDASSKPLDHPADLYDYHTYPNNPSNMFNNAHVFDK 422
Y GNYL FY+AIR AYPDIQ+ISNCD SS+PLDHPAD+YDYH Y N ++MF+ + F+
Sbjct: 1203YRGNYLKFYSAIRSAYPDIQIISNCDGSSRPLDHPADIYDYHIY-TNANDMFSRSSTFNT 1379
Query: 423 TPRKGPKAFVSEYALVGDQQAKLGTLIGGVSEAGFLIGLEKNSDHVAMAAYAPLFVNADD 482
R GPKAFVSEYA+ G+ A G+L+ ++EAGFL+GLEKNSD V M +YAPLFVNA+D
Sbjct: 1380ALRSGPKAFVSEYAVTGN-DAGTGSLLAAIAEAGFLLGLEKNSDIVKMVSYAPLFVNAND 1556
Query: 483 RKWNPDAIVFNSNQVYGTPSYWV 505
R+WNPDAIVFNS Q YGTPSYWV
Sbjct: 1557RRWNPDAIVFNSFQSYGTPSYWV 1625
>CN825301
Length = 663
Score = 330 bits (847), Expect = 3e-91
Identities = 147/220 (66%), Positives = 178/220 (80%)
Frame = +2
Query: 166 VANWKRMELKLVPTASNPKATLHLTTTQKGVIWLDQVSAMPVDTFKGHGFRTDLVNMVLE 225
V W+++E L +N ++L +TT+ GV+WLDQVSAMP+DT+KGHGFR DL MV +
Sbjct: 2 VERWRKIETILEAKDTNHYSSLQITTSLSGVVWLDQVSAMPLDTYKGHGFRKDLFQMVAD 181
Query: 226 LKPAFIRFPGGCFIEGQTLRNAFRWKDSVGPWEERPGHFGDVWGSWTDEGLGYFEGLQLA 285
L P F RFPGGCF+EG LRNAFRWKD+VG WEERPGHFGD W WTD+GLGYFEGLQLA
Sbjct: 182 LNPRFFRFPGGCFVEGDYLRNAFRWKDTVGSWEERPGHFGDKWHYWTDDGLGYFEGLQLA 361
Query: 286 EDIGAKPIWVFNNGISHTDQIDTSVITPFVQEALDGIEFARGPATSKWGSLRKSMGHPEP 345
ED+GA P+WVFNNGISH ++++T+ I PFV EAL+GIEFARG TS WGS R +MGHP+P
Sbjct: 362 EDLGALPVWVFNNGISHNEEVNTTEILPFVLEALEGIEFARGSPTSYWGSRRAAMGHPKP 541
Query: 346 FDLKYVAIGNEDCGKKNYLGNYLAFYNAIRKAYPDIQMIS 385
FDL+ VA+GNEDC NY GNY+ FYNAI++AYPDIQ+IS
Sbjct: 542 FDLRIVAVGNEDCSHYNYQGNYMKFYNAIKRAYPDIQIIS 661
>TC9804 similar to UP|Q84RC5 (Q84RC5) Alpha-L-arabinofuranosidase, partial
(16%)
Length = 658
Score = 165 bits (418), Expect = 2e-41
Identities = 87/150 (58%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Frame = +3
Query: 479 NADDRKWNPDAIVFNSNQVYGTPSYWVTHMFKESNGATFLASTLQTPDPSSFDASTILWQ 538
N++DR W+PDAIVFNS+Q YGTPSYW+ MF ES+GAT L STLQT S AS I +
Sbjct: 3 NSNDRTWSPDAIVFNSHQHYGTPSYWLQRMFTESSGATLLKSTLQT-SSQSLVASAIEYA 179
Query: 539 NPQDKKTYLKIKVANLGNNQVKLGIVVHGLESS-KIIGT-KTVLTSKNALDENTFLEPRK 596
N +DKK Y+++KV N G+ I ++GL+S K G+ KTVLT+ N +DEN+F EP K
Sbjct: 180 NSEDKKNYIRVKVVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNK 359
Query: 597 IVPQQTPLEEASANMNVELPPLSVTSFDIL 626
IVPQ TP+E AS +M VELPP SVTSFD+L
Sbjct: 360 IVPQPTPIEGASTDMKVELPPHSVTSFDLL 449
>AU089495
Length = 453
Score = 159 bits (403), Expect = 1e-39
Identities = 72/73 (98%), Positives = 73/73 (99%)
Frame = +2
Query: 360 KKNYLGNYLAFYNAIRKAYPDIQMISNCDASSKPLDHPADLYDYHTYPNNPSNMFNNAHV 419
+KNYLGNYLAFYNAIRKAYPDIQMISNCDASSKPLDHPADLYDYHTYPNNPSNMFNNAHV
Sbjct: 8 EKNYLGNYLAFYNAIRKAYPDIQMISNCDASSKPLDHPADLYDYHTYPNNPSNMFNNAHV 187
Query: 420 FDKTPRKGPKAFV 432
FDKTPRKGPKAFV
Sbjct: 188 FDKTPRKGPKAFV 226
Score = 92.8 bits (229), Expect(2) = 1e-20
Identities = 47/59 (79%), Positives = 50/59 (84%)
Frame = +3
Query: 422 KTPRKGPKAFVSEYALVGDQQAKLGTLIGGVSEAGFLIGLEKNSDHVAMAAYAPLFVNA 480
+ P K + +SEYALVGDQQAKLGTLIGGVSEAGFLIGL KNSDHV MAAYAPLFV A
Sbjct: 195 RRPAKVQRLLLSEYALVGDQQAKLGTLIGGVSEAGFLIGLXKNSDHVXMAAYAPLFVIA 371
Score = 24.3 bits (51), Expect(2) = 1e-20
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 481 DDRKWNPDAIV 491
DDRK NPDAIV
Sbjct: 373 DDRKLNPDAIV 405
>TC15100 weakly similar to UP|BAC99303 (BAC99303)
Alpha-L-arabinofuranosidase, partial (15%)
Length = 586
Score = 95.1 bits (235), Expect = 3e-20
Identities = 49/102 (48%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Frame = +1
Query: 528 SSFDASTILWQNPQDKKTYLKIKVANLGNNQVKLGIVVHGLESSKII---GTKTVLTSKN 584
SS AS I WQ+ DKK Y++IKV N G N V L I ++GL+ + + T+TVLTS N
Sbjct: 4 SSLIASAINWQSSADKKNYIRIKVVNFGANTVNLKISLNGLDPNSLQPSGSTRTVLTSAN 183
Query: 585 ALDENTFLEPRKIVPQQTPLEEASANMNVELPPLSVTSFDIL 626
+DEN+F +P+K+VP Q+ L+ MNV +PP S +SFD+L
Sbjct: 184 VMDENSFSQPKKVVPIQSLLQNVGKEMNVVVPPHSFSSFDLL 309
>TC14462 weakly similar to GB|BAA97483.1|8885553|AB025604 ripening-related
protein-like; hydrolase-like {Arabidopsis thaliana;} ,
partial (80%)
Length = 1072
Score = 29.3 bits (64), Expect = 2.0
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Frame = +1
Query: 525 PDPSSFDASTILWQNPQDKKTYLKIKVANLGNNQVKLGI--VVHGLESSKIIGTKTVL-- 580
P+P++ T + PQ+ L +K+ANL N Q L V +++ K +G TVL
Sbjct: 709 PNPTAVLPKTPIICKPQEHAIELALKIANL-NPQRTLFFEDSVRNIQAGKRVGLHTVLVG 885
Query: 581 TSKNALDENTFLEP----RKIVPQ--------QTPLEEASANMNVELPPLSVTSFDIL 626
TS+ + LE R+ VP+ ++ + + + VE P + ++FDI+
Sbjct: 886 TSQRVKGADYALESIHNLREAVPELWEDHDIKKSEVAYPAGKIAVETPVTA*STFDII 1059
>BG662093
Length = 387
Score = 28.5 bits (62), Expect = 3.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 363 YLGNYLAFYNAIRKAYPDIQMISNCDASSKPLDHPADLYDYH 404
YL + +F++ + + +I +CD S + L H + L+ YH
Sbjct: 381 YLHSDSSFFSFLLHLIHTLNLIGSCDTSCQNLFHQSFLFSYH 256
>AV773237
Length = 488
Score = 28.1 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 392 KPLDHPADLYD--YHTYPNNPSNMFNNAHVFDKTPRK 426
+PL P Y+ +HTY NP +F+ H D R+
Sbjct: 210 RPLAEPLGQYELCFHTYRTNPQLLFHGYHQLDFQRRR 100
>TC14368 similar to UP|Q9LLC2 (Q9LLC2) Xyloglucan endotransglycosylase XET2
, partial (46%)
Length = 565
Score = 27.7 bits (60), Expect = 5.8
Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
Frame = +2
Query: 366 NYLAF-YNAIRKAYPDIQMISNCDASSKPLDHPADLYDYHTY 406
NY+ + Y A +K +P + + C S +HPA L YH Y
Sbjct: 329 NYMVYNYCADKKRFPQ-GLPTECTHS*DLFEHPASLNSYHVY 451
>TC16618
Length = 1228
Score = 27.7 bits (60), Expect = 5.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 575 GTKTVLTSKNALDENTFLEPRKIVPQQTPLEEASANMNVELPPLSVT 621
G+ +V + N L P K PL ASA +N +PPL +T
Sbjct: 417 GSSSVTSPSNHRRHPNLLSPAKFT---LPLPPASARLNSMIPPLDLT 548
>BP064999
Length = 547
Score = 27.7 bits (60), Expect = 5.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 504 WVTHMFKESNGATFLASTLQTPDPSSFDAS 533
++T + SN ++F AS+L P PSSF S
Sbjct: 504 YLTEAAQFSNQSSFSASSLNPPSPSSFSLS 415
>TC17443
Length = 531
Score = 27.3 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -1
Query: 226 LKPAFIRFPGGCFIEGQTL 244
L+P +R P GCFI +TL
Sbjct: 432 LRPLTLRLPNGCFISNKTL 376
>TC9160 similar to UP|Q8H0V0 (Q8H0V0) Isp4 like protein, partial (53%)
Length = 1554
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 16/32 (49%), Gaps = 4/32 (12%)
Frame = +2
Query: 46 WAELVN----NRGFEAGGTQTPSNIAPWTIVG 73
W L+N + GF TPSNIA W + G
Sbjct: 875 WIALINIPVISYGFAGMPPATPSNIASWLVTG 970
>BP076801
Length = 118
Score = 26.9 bits (58), Expect = 9.8
Identities = 10/24 (41%), Positives = 18/24 (74%)
Frame = +2
Query: 371 YNAIRKAYPDIQMISNCDASSKPL 394
+ A+R+A+ I+ ++NC A SKP+
Sbjct: 5 FTALRRAHDTIKTLTNCYAVSKPV 76
>TC8268 similar to UP|RS8_ORYSA (P49199) 40S ribosomal protein S8, partial
(95%)
Length = 765
Score = 26.9 bits (58), Expect = 9.8
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 3/69 (4%)
Frame = -2
Query: 554 LGNNQVKLGIVVHGLESSKIIGTKTVLTSKNALDENTFLEPRK---IVPQQTPLEEASAN 610
L NQ+ +G ++H +++S G ++F P + I PQ+TPL ++N
Sbjct: 356 LSTNQLIVGCIIHHIKNSSFAG-------------HSFTPPGEVSSIKPQRTPLHIPTSN 216
Query: 611 MNVELPPLS 619
N PP S
Sbjct: 215 PN---PPNS 198
>TC14457 similar to UP|Q8GTZ1 (Q8GTZ1) bZIP transcription factor, partial
(50%)
Length = 645
Score = 26.9 bits (58), Expect = 9.8
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +1
Query: 528 SSFDASTILWQNPQDKKTYLKIKVANLGNNQVKLGIVVHGLESS 571
++ +T ++ N + + L++++A L N L ++H +ESS
Sbjct: 145 TNIGVTTQMYLNVEAENAILRVQMAELSNRLQSLNEIIHYIESS 276
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,749,246
Number of Sequences: 28460
Number of extensions: 148950
Number of successful extensions: 704
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of query: 626
length of database: 4,897,600
effective HSP length: 96
effective length of query: 530
effective length of database: 2,165,440
effective search space: 1147683200
effective search space used: 1147683200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0098a.6