BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0096b.4
(1566 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427422 257 1e-68
BP055130 145 6e-35
BP054462 137 2e-32
BF177840 102 6e-22
BP046863 95 1e-19
BG662087 93 4e-19
AU089582 81 2e-18
AV410603 83 3e-16
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 55 2e-11
AV426985 63 3e-10
BP042094 55 9e-08
BP055633 53 3e-07
TC11563 44 3e-04
TC18698 42 6e-04
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 42 6e-04
NP459451 NDX3 protein [Lotus japonicus] 42 6e-04
AV410570 39 0.005
BE122516 37 0.024
BP033405 36 0.054
TC17628 homologue to UP|SUS2_PEA (O24301) Sucrose synthase 2 (S... 34 0.16
>AV427422
Length = 417
Score = 257 bits (656), Expect = 1e-68
Identities = 112/138 (81%), Positives = 130/138 (94%)
Frame = +1
Query: 1178 TGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRD 1237
TGLPKSKG+EA+LVVVDRLSK++HF+PLKHPYTAK +A++F +E+VRLHGVP SIVSDRD
Sbjct: 4 TGLPKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRD 183
Query: 1238 PIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIP 1297
P+F+SNFW+ELFK+QGTKLKMSTAYHPESDGQ+EVVNRCLETYLRCFIADQPK+W W+P
Sbjct: 184 PLFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVP 363
Query: 1298 WAEYWYNTCFHASTGVTP 1315
WAEYWYNT +H STG TP
Sbjct: 364 WAEYWYNTSYHVSTGQTP 417
>BP055130
Length = 567
Score = 145 bits (365), Expect = 6e-35
Identities = 64/112 (57%), Positives = 83/112 (73%)
Frame = +2
Query: 1185 GFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNF 1244
GF I+VVVDRLSKY HF P + YT+ VAE F IV+LHG+P +IVSDRD F S F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358
Query: 1245 WRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWI 1296
W+ FKL GT L MS++YHP++DGQ+E +N+CLE YLRCF+ + P+ WV ++
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
Score = 30.0 bits (66), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 1279 TYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTG 1312
TY+ F+ + + +PWAEY YN+ F S G
Sbjct: 465 TYVASFMRLRVYGFPTCLPWAEYCYNSSFQTSIG 566
>BP054462
Length = 422
Score = 137 bits (344), Expect = 2e-32
Identities = 63/140 (45%), Positives = 100/140 (71%)
Frame = +1
Query: 1304 NTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQD 1363
N+ ++ S ++PF+ +YGR PP + + +++ AV + RDE L LR L ++QD
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1364 RMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAY 1423
M+ +A++KR D + IG+ VF+KL+ +R++S+ ++ KL+ +YYGPYP+VA++GAVAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1424 QLKLPPGSKVHPVFHVSLLK 1443
+L+LP S+VHPVFHVSLLK
Sbjct: 361 RLELPAHSRVHPVFHVSLLK 420
>BF177840
Length = 410
Score = 102 bits (253), Expect = 6e-22
Identities = 49/97 (50%), Positives = 64/97 (65%)
Frame = +2
Query: 1230 SSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQP 1289
+SIVSDRD F+S+FWR L+ GTKL ST HP++DGQ+EVVN+ L T LR +
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 1290 KTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPT 1326
K W W+P E+ YN H++T +PFE+VYG P T
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLT 301
>BP046863
Length = 580
Score = 94.7 bits (234), Expect = 1e-19
Identities = 55/140 (39%), Positives = 83/140 (59%)
Frame = +1
Query: 1305 TCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDR 1364
TC +TG+ RPP + + VEAV + ERD L +LR L +AQD+
Sbjct: 196 TCCRVTTGL--------RPP----HFCSIKLSVEAVNMLIEERDALLLELRGNLLKAQDQ 339
Query: 1365 MKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQ 1424
M+ A++ R + +G WVF+KL+ ++ +++ R KL+ ++YGP+ V+ RV VAY
Sbjct: 340 MRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQRKNQKLSPRFYGPFKVLERVVQVAY* 519
Query: 1425 LKLPPGSKVHPVFHVSLLKK 1444
L L S+VHPVFH+SLL+K
Sbjct: 520 LDLXSESRVHPVFHLSLLEK 579
>BG662087
Length = 373
Score = 92.8 bits (229), Expect = 4e-19
Identities = 45/111 (40%), Positives = 68/111 (60%)
Frame = +1
Query: 667 WRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTA 726
WRM VDY LNKA D +P+P I++L+D S +D SGYHQ+++ D KTA
Sbjct: 22 WRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDKTA 201
Query: 727 FRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYS 777
F T +Y + +PFGL NA +T+Q LM+ +F + + + V+ D+++V S
Sbjct: 202 FMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKS 354
>AU089582
Length = 383
Score = 81.3 bits (199), Expect(2) = 2e-18
Identities = 40/77 (51%), Positives = 51/77 (65%)
Frame = +2
Query: 1211 AKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQS 1270
A A+++ EIV LHGVP SI+SDR F S+FWR GT+LKMSTA+HP++DGQS
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1271 EVVNRCLETYLRCFIAD 1287
E + LE LR + D
Sbjct: 191 ERTIQILEDMLRACVXD 241
Score = 29.6 bits (65), Expect(2) = 2e-18
Identities = 12/42 (28%), Positives = 22/42 (51%)
Frame = +3
Query: 1291 TWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQ 1332
+W ++ E+ YN + +S + PFE +YGR + W +
Sbjct: 252 SWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPIGWFE 377
>AV410603
Length = 162
Score = 83.2 bits (204), Expect = 3e-16
Identities = 35/54 (64%), Positives = 45/54 (82%)
Frame = +1
Query: 679 ATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEG 732
+T+ D FP+P ++ELLDEL G+++FSKLDL+SGYHQ+ VK ED HKT FRTH G
Sbjct: 1 STVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 54.7 bits (130), Expect(2) = 2e-11
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Frame = +3
Query: 1403 KLAAKYYGPYPVVARVGAVAYQLKLPPG-SKVHPVFHVSLLKK 1444
KL+ ++ GP+ V+ RVG+V+Y+L LPP S VHPVFHVS+L+K
Sbjct: 48 KLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRK 176
Score = 32.3 bits (72), Expect(2) = 2e-11
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 1482 QSIKQILIQWKGQQPEEATWEDVDMIKSQFP 1512
+ + + + W+G EEATWE D+++ ++P
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYP 388
>AV426985
Length = 422
Score = 63.2 bits (152), Expect = 3e-10
Identities = 35/140 (25%), Positives = 67/140 (47%)
Frame = +1
Query: 332 HLSYNELMERRQKGLCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEE 391
++S E+ RR+K LC+ C F H+CP+K L +L + DE + + N I ++
Sbjct: 13 YISPAEMQLRREKNLCYWCDEKFSFNHKCPNKYLMMLQLTDENDSDDTSNQQVTTTISDD 192
Query: 392 ESSEGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGK 451
E S++ + G TI+ G I + + +L+D G++ F+ + L
Sbjct: 193 SPVEDHHFSLNAMR----GFTGVGTIRFTGQIGNISVQVLVDGGSSDCFLQPHIAKFLQL 360
Query: 452 TVVDTPSLRITLGDGSQART 471
+ P+ ++ +G+G + T
Sbjct: 361 PIESKPNFKVLVGNGQKMET 420
>BP042094
Length = 409
Score = 55.1 bits (131), Expect = 9e-08
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -1
Query: 1500 TWEDVDMIKSQFPSFCLEDKARAYGEGIDRTQGP-QQASDAPLIADGAVGPKIWKIYSRR 1558
+W D +K QFPSF LEDKA A G DR GP + ++ + P W +YSRR
Sbjct: 406 SWVDEPALKCQFPSFSLEDKAAAIGGXSDRIPGPVDYENQGEVLGQSSKRPTTWLVYSRR 227
Query: 1559 SKVG 1562
K+G
Sbjct: 226 RKIG 215
>BP055633
Length = 528
Score = 53.1 bits (126), Expect = 3e-07
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Frame = -2
Query: 157 TWERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYF 216
TW +FK A+LE++ + + L L+Q G+VEE++ FE + + E+ ++ F
Sbjct: 521 TWTKFKEAMLEQFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIF 342
Query: 217 LHGLKGEIRGRVR--------SMVTMADLSRMKILQIARA 248
++GLK EI ++ MV A + K L +++A
Sbjct: 341 VNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKA 222
>TC11563
Length = 470
Score = 43.5 bits (101), Expect = 3e-04
Identities = 20/43 (46%), Positives = 25/43 (57%)
Frame = +2
Query: 1484 IKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKARAYGEG 1526
+ Q+LIQW+G TWE + I+ FP F L DK YGEG
Sbjct: 8 VPQLLIQWEGAA--NCTWELLSYIQDSFPQFALADKVTFYGEG 130
>TC18698
Length = 808
Score = 42.4 bits (98), Expect = 6e-04
Identities = 21/54 (38%), Positives = 33/54 (60%)
Frame = -2
Query: 724 KTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYS 777
KT + + +Y + VMP GL N +T+Q LM+ IF + K V V+ +D++V S
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKS 640
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 42.4 bits (98), Expect = 6e-04
Identities = 21/82 (25%), Positives = 42/82 (50%)
Frame = +2
Query: 1240 FVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWA 1299
F S ++ G +++ S+ HP+++GQ+E N+ + ++ + + W+ +P
Sbjct: 23 FTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPIV 202
Query: 1300 EYWYNTCFHASTGVTPFEVVYG 1321
+ YNT +S TPF + YG
Sbjct: 203 LWSYNTMPQSSIKETPF*LTYG 268
>NP459451 NDX3 protein [Lotus japonicus]
Length = 665
Score = 42.4 bits (98), Expect = 6e-04
Identities = 32/82 (39%), Positives = 41/82 (49%), Gaps = 3/82 (3%)
Frame = +3
Query: 1464 ILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKARAY 1523
++ E VL + +L+ + + L GQ +EATWED IKSQFPSF LEDK
Sbjct: 396 LIQEEPSVLGKKGGKLKERMSETSLCPSSGQF-DEATWEDNITIKSQFPSFNLEDKVDLS 572
Query: 1524 GEGIDRT---QGPQQASDAPLI 1542
GI R Q + PLI
Sbjct: 573 AGGIVRPWDFQAGPNVTKEPLI 638
>AV410570
Length = 412
Score = 39.3 bits (90), Expect = 0.005
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 310 PRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCFKCGGAFHPMHQCPDKQL 365
P+ + QP+ R +P E+ RR+KGLCF C + H+CP+KQL
Sbjct: 50 PKPVPKLQPQAKRISPA----------EMQLRREKGLCFTCDEKYSWNHKCPNKQL 187
>BE122516
Length = 364
Score = 37.0 bits (84), Expect = 0.024
Identities = 33/125 (26%), Positives = 55/125 (43%), Gaps = 3/125 (2%)
Frame = +2
Query: 503 LGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAG---FSGY 559
+G+ WL T D +N KKT++F G E + V + +A
Sbjct: 14 VGMNWL-TANDATLNCRKKTVTF----------GTSEGDAKRVKRTDKVGKASECESDVL 160
Query: 560 LGKEKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVN 619
LG ++ +K + GV G+ ++ E V + LPP+R + +I G GP++
Sbjct: 161 LGA--LETDKSDTGVEGIP-----VVREFSDVFPEEVSELPPEREVEFSID*VPGTGPIS 319
Query: 620 VRPYR 624
+ PYR
Sbjct: 320 IAPYR 334
>BP033405
Length = 508
Score = 35.8 bits (81), Expect = 0.054
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -3
Query: 1540 PLIADGAVGPKIWKIYSRRSKVGMTHS 1566
PL+ D VGPK+WK+YSRR K G S
Sbjct: 323 PLVQDD-VGPKVWKVYSRREKGGKRES 246
>TC17628 homologue to UP|SUS2_PEA (O24301) Sucrose synthase 2 (Sucrose-UDP
glucosyltransferase 2) , partial (12%)
Length = 607
Score = 34.3 bits (77), Expect = 0.16
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 1538 DAPLIADGAVGPKIWKIYSRRSK 1560
+ PL G+ GPK+WK+YSR+ +
Sbjct: 310 EGPLALHGSAGPKVWKVYSRKGR 378
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,845,139
Number of Sequences: 28460
Number of extensions: 355753
Number of successful extensions: 1788
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of query: 1566
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1464
effective length of database: 1,994,680
effective search space: 2920211520
effective search space used: 2920211520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0096b.4