TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0096b.1
         (137 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9310 similar to UP|RS24_ARATH (Q9SS17) 40S ribosomal protein S...   271  4e-74
TC16865 similar to UP|RS24_ARATH (Q9SS17) 40S ribosomal protein ...   268  2e-73
AW164061                                                              202  2e-53
BP034952                                                               68  6e-13
CN825005                                                               43  2e-05
BP064337                                                               27  1.2
TC12672 weakly similar to UP|Q9LV59 (Q9LV59) Genomic DNA, chromo...    27  1.6
TC15444                                                                26  2.1
TC19271 similar to UP|Q8S531 (Q8S531) Cytosolic aldehyde dehydro...    26  2.8
AW720070                                                               25  3.6
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...    25  4.7
TC15643 similar to UP|O64720 (O64720) At2g02560 protein, partial...    25  6.2
TC8122 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partia...    24  8.1
TC20230 homologue to UP|CYC_BRAOL (P00050) Cytochrome c, complete      24  8.1
TC19312 similar to UP|Q9XIS4 (Q9XIS4) Branching enzyme 3  , part...    24  8.1
BP064293                                                               24  8.1

>TC9310 similar to UP|RS24_ARATH (Q9SS17) 40S ribosomal protein S24,
           complete
          Length = 706

 Score =  271 bits (692), Expect = 4e-74
 Identities = 137/137 (100%), Positives = 137/137 (100%)
 Frame = +1

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF
Sbjct: 85  MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 264

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR
Sbjct: 265 KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 444

Query: 121 GVKKTKAADAAKAGKKK 137
           GVKKTKAADAAKAGKKK
Sbjct: 445 GVKKTKAADAAKAGKKK 495


>TC16865 similar to UP|RS24_ARATH (Q9SS17) 40S ribosomal protein S24,
           complete
          Length = 634

 Score =  268 bits (685), Expect = 2e-73
 Identities = 135/137 (98%), Positives = 136/137 (98%)
 Frame = +2

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF
Sbjct: 68  MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 247

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR
Sbjct: 248 KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 427

Query: 121 GVKKTKAADAAKAGKKK 137
           GVKKTKA+DAAK GKKK
Sbjct: 428 GVKKTKASDAAKGGKKK 478


>AW164061 
          Length = 340

 Score =  202 bits (513), Expect = 2e-53
 Identities = 100/103 (97%), Positives = 101/103 (97%)
 Frame = +1

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSK ELKEKLARLYDVKDPNTVFVF
Sbjct: 31  MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKTELKEKLARLYDVKDPNTVFVF 210

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVE 103
           KFRTHFGGGKSTGFGLIY SLENA+KYEPKYRLIRNGLDTKVE
Sbjct: 211 KFRTHFGGGKSTGFGLIYHSLENAQKYEPKYRLIRNGLDTKVE 339


>BP034952 
          Length = 450

 Score = 67.8 bits (164), Expect = 6e-13
 Identities = 41/73 (56%), Positives = 43/73 (58%), Gaps = 28/73 (38%)
 Frame = -3

Query: 93  LIRNGLDTKVEKSRKQLKERKNRAKKIRGVKK---------------------------- 124
           L +NGLDTKVEKSRKQLKERKNRAKKIRGVKK                            
Sbjct: 334 LFQNGLDTKVEKSRKQLKERKNRAKKIRGVKKVIKAYNS*WFLTLYLGFVELNWDVLFLQ 155

Query: 125 TKAADAAKAGKKK 137
           TKA+DAAK GKKK
Sbjct: 154 TKASDAAKGGKKK 116


>CN825005 
          Length = 665

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = +2

Query: 76  LIYDSLENAKKYEPKYRLIRN 96
           LIYDSLENAKKYEPKYR I N
Sbjct: 599 LIYDSLENAKKYEPKYRFIMN 661


>BP064337 
          Length = 485

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 46  ARLYDVKDPNTVFVFKFRTHFG 67
           AR+Y V    TVF FK + +FG
Sbjct: 160 ARMYQVNGDETVFFFKAKDYFG 95


>TC12672 weakly similar to UP|Q9LV59 (Q9LV59) Genomic DNA, chromosome 3, P1
           clone: MOB24, partial (14%)
          Length = 548

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 13/40 (32%), Positives = 24/40 (59%), Gaps = 1/40 (2%)
 Frame = +3

Query: 74  FGLIYDSLENAKKYE-PKYRLIRNGLDTKVEKSRKQLKER 112
           FG IY+ +EN K+ +  +   +R   + ++E  +KQ+ ER
Sbjct: 3   FGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILER 122


>TC15444 
          Length = 641

 Score = 26.2 bits (56), Expect = 2.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 20  SRKQFIVDVLHPGRANVSK 38
           +R   +VDVLH GRAN SK
Sbjct: 86  NRVLHVVDVLHRGRANKSK 142


>TC19271 similar to UP|Q8S531 (Q8S531) Cytosolic aldehyde dehydrogenase
           RF2C, partial (25%)
          Length = 485

 Score = 25.8 bits (55), Expect = 2.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 55  NTVFVFKFRTHFGGGKSTGFGLIYDSLENAKKY 87
           N  F F     FGG K +GFG  Y  LE   KY
Sbjct: 229 NCFFAFDIDCPFGGYKMSGFGRDY-GLEALHKY 324


>AW720070 
          Length = 484

 Score = 25.4 bits (54), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 105 SRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
           + K+ K++K + KK + VKK  +    K  KKK
Sbjct: 104 AEKKRKKKKKKRKKKKQVKKESSQQQEKKKKKK 202


>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           ; Reverse transcriptase ; Endonuclease] , partial (9%)
          Length = 747

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 14/43 (32%), Positives = 23/43 (52%)
 Frame = +2

Query: 11  RKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKD 53
           ++F  N  +    ++ D+L  G       ELK +LAR +D+KD
Sbjct: 65  KRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKD 193


>TC15643 similar to UP|O64720 (O64720) At2g02560 protein, partial (17%)
          Length = 966

 Score = 24.6 bits (52), Expect = 6.2
 Identities = 16/70 (22%), Positives = 28/70 (39%)
 Frame = +3

Query: 41  LKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDT 100
           LK  L   YDVK P  + + K   +           + D L+    ++PK   ++  +D 
Sbjct: 342 LKSGLDDHYDVKMPCHLILSKLADNCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDR 521

Query: 101 KVEKSRKQLK 110
             +  R  L+
Sbjct: 522 NEDMIRSALR 551


>TC8122 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partial (74%)
          Length = 1505

 Score = 24.3 bits (51), Expect = 8.1
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = +2

Query: 57  VFVFKFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLI 94
           +++F   T  GGG STG    +   EN K+ E + R I
Sbjct: 140 LYIFFAGTMAGGGGSTGRLPTWKERENNKRRERRRRAI 253


>TC20230 homologue to UP|CYC_BRAOL (P00050) Cytochrome c, complete
          Length = 598

 Score = 24.3 bits (51), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = +3

Query: 77  IYDSLENAKKYEPKYRLIRNGLDTKVEKS 105
           +YD L N KKY P  +++  GL    E++
Sbjct: 267 LYDYLLNPKKYIPGTKMVFPGLKKPQERA 353


>TC19312 similar to UP|Q9XIS4 (Q9XIS4) Branching enzyme 3  , partial (4%)
          Length = 523

 Score = 24.3 bits (51), Expect = 8.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 34  ANVSKAELKEKLARLYDVKDPNTVF 58
           ANVS  +LK   +R ++ +DP+ +F
Sbjct: 213 ANVSMVQLKLLTSRSFEAEDPSGMF 139


>BP064293 
          Length = 505

 Score = 24.3 bits (51), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -1

Query: 77  IYDSLENAKKYEPKYRLIRNGLDTKVEKS 105
           +YD L N KKY P  +++  GL    E++
Sbjct: 316 LYDYLLNPKKYIPGTKMVFPGLKKPQERA 230


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,492,015
Number of Sequences: 28460
Number of extensions: 14672
Number of successful extensions: 89
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of query: 137
length of database: 4,897,600
effective HSP length: 81
effective length of query: 56
effective length of database: 2,592,340
effective search space: 145171040
effective search space used: 145171040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)