TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0095c.6
         (384 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14921 similar to UP|Q8L949 (Q8L949) Plastid protein, partial (...    94  3e-20
TC11015 similar to PIR|T52623|T52623 DAG protein homolog [import...    87  5e-18
BP066300                                                               77  6e-15
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)         72  1e-13
TC15623 similar to UP|P93486 (P93486) Glycine-rich RNA-binding p...    72  2e-13
TC10261 homologue to UP|DAG_ANTMA (Q38732) DAG protein, chloropl...    68  3e-12
TC16543                                                                68  3e-12
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p...    64  3e-11
BI419822                                                               63  7e-11
TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, ...    62  2e-10
TC10758                                                                57  5e-09
TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), par...    55  2e-08
TC12531 similar to UP|Q9ASQ8 (Q9ASQ8) At1g22910/F19G10_13, parti...    55  3e-08
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ...    54  3e-08
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    52  1e-07
TC19017 similar to UP|Q8S2X6 (Q8S2X6) Glycine-rich RNA binding p...    52  2e-07
BP043331                                                               51  4e-07
BP047377                                                               51  4e-07
TC10587 weakly similar to GB|AAC50895.1|1518802|HSU63289 CUG-BP/...    50  5e-07
TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprote...    50  5e-07

>TC14921 similar to UP|Q8L949 (Q8L949) Plastid protein, partial (73%)
          Length = 1030

 Score = 94.4 bits (233), Expect = 3e-20
 Identities = 50/117 (42%), Positives = 67/117 (56%)
 Frame = +3

Query: 161 SSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEK 220
           SSG    S    T    LFP  +  HWL+ MDKPG E  TK  ++D Y Q L KV+G+E+
Sbjct: 288 SSGSNSFSDRPPTEMAPLFPGCDYNHWLIVMDKPGGEGATKQDMIDCYVQTLAKVLGSEE 467

Query: 221 DAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSV 277
           +A+  IY+VS +  FGF CE+DE+ +    G+ GV  V PD   + E K+Y   L V
Sbjct: 468 EAKKKIYNVSCERYFGFGCEIDEETSNKFEGMNGVLFVLPDSYVDPEYKDYGAELFV 638



 Score = 82.8 bits (203), Expect = 9e-17
 Identities = 59/164 (35%), Positives = 82/164 (49%), Gaps = 13/164 (7%)
 Frame = +3

Query: 8   ISSVNPNRS-----QVHQLPTN--------ITLPNKSYHSNLPSSSSSSISCNRFFTIIA 54
           I S +P RS     QV   PT         +     S +S L SS S+S S         
Sbjct: 159 ILSQSPRRSVYALSQVFFTPTTRFGGIRCRVNRAGDSAYSPLNSSGSNSFSDR------- 317

Query: 55  AAAATTYPSFTPSTTHNRHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLY 114
               T      P   +N HW+++MDKP     +K  +ID YV+TL  V+GSE+EA+  +Y
Sbjct: 318 --PPTEMAPLFPGCDYN-HWLIVMDKPGGEGATKQDMIDCYVQTLAKVLGSEEEAKKKIY 488

Query: 115 DASWDTHFGFCCDIDEEISSQLASLPGVLSVRPDPDFNSLKKDY 158
           + S + +FGF C+IDEE S++   + GVL V PD   +   KDY
Sbjct: 489 NVSCERYFGFGCEIDEETSNKFEGMNGVLFVLPDSYVDPEYKDY 620


>TC11015 similar to PIR|T52623|T52623 DAG protein homolog [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (65%)
          Length = 924

 Score = 87.0 bits (214), Expect = 5e-18
 Identities = 47/132 (35%), Positives = 73/132 (54%), Gaps = 1/132 (0%)
 Frame = +1

Query: 147 PDPDFNSLKKDYSLSSGQ-AGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIV 205
           P   F  ++ +  L++G  + +S         LFP  +  HWL+ MDKPG E  TK Q++
Sbjct: 163 PASRFTDVRFNSELTTGSPSSISEKPAAEMPPLFPGCDYNHWLIIMDKPGGEGATKKQMI 342

Query: 206 DYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFE 265
           D Y + L KV+G+E++A+  IY +S +   GF CE+DE+ +  L G  G+  V PD   +
Sbjct: 343 DCYIKTLAKVVGSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVD 522

Query: 266 SENKNYEDSLSV 277
            E ++Y   L V
Sbjct: 523 PEYQDYGGELFV 558



 Score = 83.6 bits (205), Expect = 5e-17
 Identities = 48/127 (37%), Positives = 70/127 (54%)
 Frame = +1

Query: 32  YHSNLPSSSSSSISCNRFFTIIAAAAATTYPSFTPSTTHNRHWMVLMDKPPLGVISKSQV 91
           ++S L + S SSIS            A   P   P   +N HW+++MDKP     +K Q+
Sbjct: 190 FNSELTTGSPSSIS---------EKPAAEMPPLFPGCDYN-HWLIIMDKPGGEGATKKQM 339

Query: 92  IDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEISSQLASLPGVLSVRPDPDF 151
           ID Y+KTL  V+GSE+EA+  +Y  S + + GF C+IDEE S +L    G++ V PD   
Sbjct: 340 IDCYIKTLAKVVGSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYV 519

Query: 152 NSLKKDY 158
           +   +DY
Sbjct: 520 DPEYQDY 540


>BP066300 
          Length = 420

 Score = 76.6 bits (187), Expect = 6e-15
 Identities = 34/73 (46%), Positives = 56/73 (76%)
 Frame = -3

Query: 297 TGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEMNGK 356
           +GLSF T+E++LR  F+ FG+LV V +++DK++ R +G+AF+ Y TEE +  A++ M+GK
Sbjct: 418 SGLSFRTTEESLRNCFKNFGQLVDVXLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGK 239

Query: 357 IINGWMIVVDVAK 369
            ++G +I V+VAK
Sbjct: 238 FLDGRVIFVEVAK 200


>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
          Length = 1751

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 38/86 (44%), Positives = 54/86 (62%)
 Frame = +2

Query: 73  HWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEI 132
           HW+V+M+KP  G  ++  +ID Y+KTL  V+GSE+EA+M +Y  S   +F F   + EE+
Sbjct: 323 HWLVVMEKPE-GDPTRDDIIDGYIKTLAQVVGSEQEARMKIYSVSTKHYFAFGALVSEEL 499

Query: 133 SSQLASLPGVLSVRPDPDFNSLKKDY 158
           S +L  LP V  V PD   N  +KDY
Sbjct: 500 SYKLKELPKVRWVLPDSYLNVREKDY 577



 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 34/98 (34%), Positives = 54/98 (54%)
 Frame = +2

Query: 174 RTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKT 233
           +  +L    + +HWLV M+KP  +  T+  I+D Y + L +V+G+E++A+M IY VS K 
Sbjct: 287 KETILLDGCDFEHWLVVMEKPEGDP-TRDDIIDGYIKTLAQVVGSEQEARMKIYSVSTKH 463

Query: 234 NFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNY 271
            F F   + E+ +  L  +P V  V PD       K+Y
Sbjct: 464 YFAFGALVSEELSYKLKELPKVRWVLPDSYLNVREKDY 577


>TC15623 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
           PsGRBP, partial (88%)
          Length = 683

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = +1

Query: 278 PNSSEASQEASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAF 337
           P +S  +    + + KLF+ GLS+   +K+L  AF  FG + + +VI+D+ + RS+G+ F
Sbjct: 142 PVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGF 321

Query: 338 IEYTTEEAAGAALKEMNGKIINGWMIVVDVAKTNP--PRFNRGH 379
           + + +EE+A +AL  M+G+ +NG  I V  A   P  PR   G+
Sbjct: 322 VSFDSEESASSALSSMDGQDLNGRNIRVSYANDRPAGPRGGGGY 453


>TC10261 homologue to UP|DAG_ANTMA (Q38732) DAG protein, chloroplast
           precursor, partial (41%)
          Length = 510

 Score = 67.8 bits (164), Expect = 3e-12
 Identities = 35/83 (42%), Positives = 51/83 (61%)
 Frame = +2

Query: 66  PSTTHNRHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFC 125
           P   +N HW+++M+ P     S+ Q+I+ Y+ TL TV+GS +EA+  +Y  S  T+ GF 
Sbjct: 257 PGCDYN-HWLIVMEFPKDPAPSREQMIETYLFTLSTVLGSMEEAKKNMYAFSTTTYTGFQ 433

Query: 126 CDIDEEISSQLASLPGVLSVRPD 148
           C +DE  S +   LPGVL V PD
Sbjct: 434 CTVDEATSEKFKGLPGVLWVLPD 502



 Score = 62.0 bits (149), Expect = 2e-10
 Identities = 35/109 (32%), Positives = 59/109 (54%)
 Frame = +2

Query: 153 SLKKDYSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQIL 212
           +L +DYS     A  SS  + R  ++ P  +  HWL+ M+ P     ++ Q+++ Y   L
Sbjct: 191 ALDEDYS-----AKRSSSSEQRETIMLPGCDYNHWLIVMEFPKDPAPSREQMIETYLFTL 355

Query: 213 TKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPD 261
           + V+G+ ++A+  +Y  S  T  GF C +DE  ++   G+PGV  V PD
Sbjct: 356 STVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPD 502


>TC16543 
          Length = 575

 Score = 67.8 bits (164), Expect = 3e-12
 Identities = 34/86 (39%), Positives = 52/86 (59%)
 Frame = +1

Query: 73  HWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEI 132
           HW+++M+ P     S+ ++++ YVKTL  ++GSE+EA   +Y  S  T+ GF   I EE+
Sbjct: 313 HWLIVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHTYTGFGALISEEL 492

Query: 133 SSQLASLPGVLSVRPDPDFNSLKKDY 158
           S ++   PGVL V PD   +   KDY
Sbjct: 493 SYKVKEXPGVLWVLPDSYLDVPNKDY 570



 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 30/98 (30%), Positives = 54/98 (54%)
 Frame = +1

Query: 174 RTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKT 233
           +  +L    + +HWL+ M+ P     ++ ++V+ Y + LT+++G+E++A   IY VS  T
Sbjct: 277 KETILLDGCDYEHWLIVMEFPENPKPSEQEMVNAYVKTLTQIVGSEEEAMKKIYSVSTHT 456

Query: 234 NFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNY 271
             GF   + E+ +  +   PGV  V PD   +  NK+Y
Sbjct: 457 YTGFGALISEELSYKVKEXPGVLWVLPDSYLDVPNKDY 570


>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
           partial (93%)
          Length = 725

 Score = 64.3 bits (155), Expect = 3e-11
 Identities = 30/77 (38%), Positives = 51/77 (65%)
 Frame = +1

Query: 293 KLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKE 352
           + FV GL++ T   TL  AF  +GE++  KV+ D+ + RS+G+ F+ +T+EEA  +A++ 
Sbjct: 85  RCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEG 264

Query: 353 MNGKIINGWMIVVDVAK 369
           MNG  ++G  I V+ A+
Sbjct: 265 MNGNELDGRNITVNEAQ 315


>BI419822 
          Length = 380

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 35/91 (38%), Positives = 57/91 (62%)
 Frame = +2

Query: 280 SSEASQEASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIE 339
           SS AS E   R    FV GL++ T  + L  AF  +GE+V+ KVI D+ + RS+G+ F+ 
Sbjct: 50  SSMASAEIEFRC---FVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVT 220

Query: 340 YTTEEAAGAALKEMNGKIINGWMIVVDVAKT 370
           + +E+A   A++ MNG+ ++G  I V+ A++
Sbjct: 221 FASEQAMKDAIEAMNGQNLDGRNITVNEAQS 313


>TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
           (58%)
          Length = 881

 Score = 62.0 bits (149), Expect = 2e-10
 Identities = 30/76 (39%), Positives = 49/76 (64%)
 Frame = +2

Query: 294 LFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEM 353
           LF    ++ TS++ L+ AFE FG+L + KV++DK S RS+G+ F+ +  ++A   A+  M
Sbjct: 62  LFYWWPAWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAM 241

Query: 354 NGKIINGWMIVVDVAK 369
           NG  ++G  I VD A+
Sbjct: 242 NGMDLDGRTITVDKAQ 289


>TC10758 
          Length = 532

 Score = 57.0 bits (136), Expect = 5e-09
 Identities = 35/87 (40%), Positives = 54/87 (61%)
 Frame = +1

Query: 281 SEASQEASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEY 340
           S A ++ ++R  KLFV GL+  T+ +TLR+ F  +G+L +  VI DK + RSKGY F+ +
Sbjct: 280 SVADRDTAVR--KLFVRGLACETTTETLRSVFSAYGDLDEAIVIFDKSTGRSKGYGFVVF 453

Query: 341 TTEEAAGAALKEMNGKIINGWMIVVDV 367
              + A  ALK+ + K I+G M V  +
Sbjct: 454 KHIDGAILALKDPSKK-IDGRMTVTQL 531


>TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), partial (37%)
          Length = 1779

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 27/68 (39%), Positives = 41/68 (59%)
 Frame = +2

Query: 292 KKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALK 351
           +K+FV GL + T+ +TL + F  +GE+   K + DK++ +SKGYAFI +   +    ALK
Sbjct: 608 RKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYAFILFKHRDGCRRALK 787

Query: 352 EMNGKIIN 359
               KI N
Sbjct: 788 NPQKKIGN 811



 Score = 38.9 bits (89), Expect = 0.001
 Identities = 25/77 (32%), Positives = 40/77 (51%)
 Frame = +2

Query: 278 PNSSEASQEASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAF 337
           PN+   S+      +K+FV+ +S       L   F+ FGE+    + +DK + R KG+A 
Sbjct: 863 PNAPPVSEYTQ---RKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFAL 1033

Query: 338 IEYTTEEAAGAALKEMN 354
             Y + E+A  AL+E N
Sbjct: 1034FVYRSVESAKKALEEPN 1084


>TC12531 similar to UP|Q9ASQ8 (Q9ASQ8) At1g22910/F19G10_13, partial (39%)
          Length = 688

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 34/105 (32%), Positives = 58/105 (54%), Gaps = 6/105 (5%)
 Frame = -1

Query: 283 ASQEASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTT 342
           A Q       K+FV GL++ T ++T++  FE FG++++  VI DK + RSKGY F+ +  
Sbjct: 388 AGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFRE 209

Query: 343 EEAAGAALKE----MNGKIINGWMIVVDVAKTNP--PRFNRGHAR 381
            EAA  A  +    ++G+  N  +  + V ++ P  P+ + G  R
Sbjct: 208 PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKQHGGAGR 74


>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
           (31%)
          Length = 727

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 28/68 (41%), Positives = 41/68 (60%)
 Frame = +1

Query: 292 KKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALK 351
           +K+FV GL + T+  TL  AF+ +G +   K + DK++ +SKGY FI + +   A  ALK
Sbjct: 466 RKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 645

Query: 352 EMNGKIIN 359
           E   KI N
Sbjct: 646 EPQKKIGN 669


>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
           (85%)
          Length = 1917

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 26/72 (36%), Positives = 41/72 (56%)
 Frame = +2

Query: 294 LFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEM 353
           +F+  L      K L   F  FG ++  KV  D  S +SKGY F+++ TEEAA  A++++
Sbjct: 98  IFIKNLDKAIDHKALHDTFSTFGNILSCKVATDS-SGQSKGYGFVQFETEEAAQNAIEKL 274

Query: 354 NGKIINGWMIVV 365
           NG ++N   + V
Sbjct: 275 NGMLLNDKQVYV 310


>TC19017 similar to UP|Q8S2X6 (Q8S2X6) Glycine-rich RNA binding protein
           (Fragment), partial (26%)
          Length = 320

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 25/67 (37%), Positives = 46/67 (68%), Gaps = 4/67 (5%)
 Frame = +2

Query: 293 KLFVTGLSFYTSEKTLRAAFEGF----GELVQVKVIIDKISKRSKGYAFIEYTTEEAAGA 348
           +LFV  LS+ T+++++R AFE      G ++  KVI+D+ + RS+G+ F+ +++ + A A
Sbjct: 107 RLFVGNLSWNTTDESMRMAFEDGAGVPGSVLDSKVILDRETGRSRGFGFVTFSSPDLASA 286

Query: 349 ALKEMNG 355
           A+ +MNG
Sbjct: 287 AIAKMNG 307


>BP043331 
          Length = 420

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 28/100 (28%), Positives = 52/100 (52%)
 Frame = +3

Query: 284 SQEASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTE 343
           ++ AS  T  LFV G+S  T+++ L  AF   G++    V   K+  + + +  + +TT 
Sbjct: 99  NKAASAPTSMLFVGGISPTTTDRHLDDAFSIHGDVYLATVKHTKVDGKPRQFGLVAFTTV 278

Query: 344 EAAGAALKEMNGKIINGWMIVVDVAKTNPPRFNRGHARPP 383
           E A  AL+ +NG+++ G  + ++  K +    +  H  PP
Sbjct: 279 ECATRALQALNGQVLQGRRLRINYTKNSHSYMDGHHYDPP 398


>BP047377 
          Length = 564

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
 Frame = +3

Query: 274 SLSVPNSSEASQEASLRTKK--LFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKR 331
           S + P+SS     AS +++   +FV  + +  +E+ L    +  G +V  +++ID+ + +
Sbjct: 69  SRASPSSSAVDFMASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGK 248

Query: 332 SKGYAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKTN 371
            KGY F EY  EE A +A + + G  ING  + VD A+ +
Sbjct: 249 PKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 368


>TC10587 weakly similar to GB|AAC50895.1|1518802|HSU63289 CUG-BP/hNab50
           {Homo sapiens;} , partial (19%)
          Length = 482

 Score = 50.4 bits (119), Expect = 5e-07
 Identities = 26/80 (32%), Positives = 43/80 (53%)
 Frame = +1

Query: 294 LFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEM 353
           LF+  +     ++ L  AF+ FG ++  KV +DK +  SK + F+ Y + EAA +A+  M
Sbjct: 19  LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 198

Query: 354 NGKIINGWMIVVDVAKTNPP 373
           NG  + G  + V   + N P
Sbjct: 199 NGYQLGGKKLKVQHKRDNKP 258


>TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
           chloroplast precursor (CP29A), partial (63%)
          Length = 1602

 Score = 50.4 bits (119), Expect = 5e-07
 Identities = 25/88 (28%), Positives = 47/88 (53%)
 Frame = +3

Query: 287 ASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAA 346
           +S    ++ V  L++      L + F   G +V  KVI D+ S RS+G+ F+ +++ +  
Sbjct: 723 SSYSENRVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSSPDEV 902

Query: 347 GAALKEMNGKIINGWMIVVDVAKTNPPR 374
            +A++ ++G  +NG  I V  A + P R
Sbjct: 903 NSAIRSLDGADLNGRAIKVSQADSKPKR 986


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,022,557
Number of Sequences: 28460
Number of extensions: 102703
Number of successful extensions: 854
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of query: 384
length of database: 4,897,600
effective HSP length: 92
effective length of query: 292
effective length of database: 2,279,280
effective search space: 665549760
effective search space used: 665549760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)