TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0095c.5
         (423 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV423990                                                               42  1e-04
TC9751 weakly similar to UP|O23743 (O23743) SFR1 protein precurs...    29  1.3
BP033938                                                               29  1.7
TC16505 similar to GB|AAN64529.1|24797034|BT001138 At5g58299/At5...    29  1.7
BP064595                                                               29  1.7
AV422876                                                               28  2.2
AV765128                                                               28  2.9
TC14350 similar to UP|PSAL_SPIOL (Q41385) Photosystem I reaction...    28  3.7
TC12065                                                                28  3.7
BP064446                                                               27  6.4
BP055392                                                               27  6.4
BP054795                                                               27  6.4
AV780335                                                               27  6.4
AW164114                                                               27  6.4

>AV423990 
          Length = 220

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 10  LRPLFHLLFPLSIHWIAEEMTVSVLVDVTTSALCPGGSTCPKVIYINGLQQTIVG 64
           L  L HL   + +      + +  + D+T +ALCPG   C   IY+ G QQ ++G
Sbjct: 55  LTGLSHLFVTMFLTGFGGVIAIPAITDITMAALCPGQDECSLAIYLTGFQQAMIG 219


>TC9751 weakly similar to UP|O23743 (O23743) SFR1 protein precursor ,
           partial (5%)
          Length = 550

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 25/43 (57%)
 Frame = -3

Query: 20  LSIHWIAEEMTVSVLVDVTTSALCPGGSTCPKVIYINGLQQTI 62
           L +HW+  E +  + +   T+A CPGG +C  VI +  ++ T+
Sbjct: 305 LELHWLF*EESELLALCF*TNATCPGGGSC--VISLMSIKTTV 183


>BP033938 
          Length = 479

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (57%)
 Frame = +2

Query: 246 VFGFNKNQFSELLMMVGIGSIFSQMVLLPILNPKVG 281
           VFGF K   S LL+  G+G++  ++ L   LNP  G
Sbjct: 302 VFGFTKKADSTLLLRPGVGTVSWRLGLSNDLNPVKG 409


>TC16505 similar to GB|AAN64529.1|24797034|BT001138 At5g58299/At5g58299
           {Arabidopsis thaliana;}, partial (16%)
          Length = 649

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -3

Query: 318 IYVLVKPSGKAQTFIAGAQSISDLLSPIAMSPLTS-----WFLSSNAPFDCKGFSIICA 371
           IY L+K  G         QS S LL P ++S L S     W  ++ APF  +GF I  A
Sbjct: 326 IYSLLKMVGSLSQMAGSLQSFS-LLHPCSVSYLASSLHRPWQFATFAPFLLQGFGISLA 153


>BP064595 
          Length = 474

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 1/80 (1%)
 Frame = +2

Query: 306 PWVPYFSASFGIIYVLVKPSGKAQTFIAGAQSISDLLSPIAMSPLTSWFLSSNAPFDCKG 365
           P  P FS+   I   LV  S       +   S   LLSP+++S LTS+ L+S+ P     
Sbjct: 224 PLYPLFSSP--IPTPLVLSSSTPSLTPSPFSSPPPLLSPLSISLLTSYPLASSPPLTLPP 397

Query: 366 FS-IICASVSMVAETENEKL 384
           FS  + +S+  +  ++NE L
Sbjct: 398 FSPPLASSICSLFCSDNENL 457


>AV422876 
          Length = 417

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
 Frame = +1

Query: 189 YMQFFLVETV------TPAPKKNQVSGFCTKVVDVLHKRYKSMRNAAEILDNLIIAVQYY 242
           Y++  L+ T+      T +  K     F T  V VL +  ++    +E   NL+    + 
Sbjct: 145 YLEDILLRTIPFPSWFTSSGYKKLYEAFSTSAVKVLDEAEQAGLKRSEACHNLVFMAGFN 324

Query: 243 LKAVFGFNKNQFSELLMMVGIG 264
               +G  KNQF  ++  VG+G
Sbjct: 325 ---AYGGLKNQFPVVIKWVGLG 381


>AV765128 
          Length = 506

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 300 YGLAWAPWVPYFSASFGIIYVLVKPSGKAQTFIAGAQSISDLLSPIAMSP 349
           +GL  A WV + +++      L  P+G A TF + + SIS LL   ++SP
Sbjct: 352 FGLNNANWVTFSASN------LNPPNGLAFTFASSSSSISILLISASISP 483


>TC14350 similar to UP|PSAL_SPIOL (Q41385) Photosystem I reaction center
           subunit XI, chloroplast precursor (PSI-L) (PSI subunit
           V), partial (94%)
          Length = 1035

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 323 KPSGKAQTFIAGAQSISDLLSPIAMSPLTSWFLSS 357
           KP+ +    I G   I  L +P+  SPL +W+LS+
Sbjct: 194 KPTYQVIQPINGDPFIGSLETPVTSSPLVAWYLSN 298


>TC12065 
          Length = 358

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 368 IICASVSMVAETENEKLKENLQDEKNKNIELEKQ 401
           I C    +  ET NEK+K+   ++ N+N++ E +
Sbjct: 142 ITCEDQKLSLETRNEKVKKGKMEKWNENLKQESE 41


>BP064446 
          Length = 392

 Score = 26.9 bits (58), Expect = 6.4
 Identities = 14/23 (60%), Positives = 16/23 (68%)
 Frame = -2

Query: 66  FKMVVLPLLGQLSDEHGRKPLLL 88
           F MV+ PL G LSD  GRK LL+
Sbjct: 214 FLMVLQPLAGWLSDIIGRKTLLV 146


>BP055392 
          Length = 521

 Score = 26.9 bits (58), Expect = 6.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 3   WWSGLIELRPLFHLLFPLS----IHWIAEEMTVSVLVDVT 38
           W S ++ELR L  +LF ++    +HW+   +T +   DVT
Sbjct: 153 WLSEMVELRRLLLMLFIITTTCFLHWMPNGVTATDPNDVT 272


>BP054795 
          Length = 516

 Score = 26.9 bits (58), Expect = 6.4
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 10  LRPLFHLLFPLSIHWIAEEMTVSVLVDVTTSALCPGGSTCPK-VIYINGLQQTIVGIFKM 68
           L  L ++ + LSIHW    +    L+   TS+ CP GS CP   IY  G Q  +  + K+
Sbjct: 265 LSSLPYMSYTLSIHWSFVALPTLKLL-AQTSSNCP-GSCCPF*QIYFLGNQFCVPNLPKI 92

Query: 69  VVLPLLGQ 76
                LGQ
Sbjct: 91  *FAYELGQ 68


>AV780335 
          Length = 398

 Score = 26.9 bits (58), Expect = 6.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 100 VLAWDQSEEFVYAYYVLRTFSYIISQGSIFCISVAY 135
           +L W  S   V+AY+VL  F + +S  + FCI +++
Sbjct: 107 LLIWPLS---VHAYHVLSIFWWSLSDATSFCICMSF 9


>AW164114 
          Length = 297

 Score = 26.9 bits (58), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
 Frame = -1

Query: 291 LASIAYAWLYGLA-WAPWVPYFSASFGIIYVL 321
           LA+ A  W++  A WAPW  +  A++ +  VL
Sbjct: 216 LAAWAVCWVFSFAAWAPWAVFSLAAWAVWAVL 121


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,759,662
Number of Sequences: 28460
Number of extensions: 106157
Number of successful extensions: 757
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of query: 423
length of database: 4,897,600
effective HSP length: 93
effective length of query: 330
effective length of database: 2,250,820
effective search space: 742770600
effective search space used: 742770600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)