Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0093b.4
         (565 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12008 similar to GB|BAB13743.1|10281006|AB046955 pseudo-respon...    77  1e-14
TC8495 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-resp...    71  4e-13
AV415674                                                               69  2e-12
CB827384                                                               60  1e-09
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p...    59  3e-09
TC14920 similar to UP|BAC92733 (BAC92733) Hd1-like protein, part...    55  3e-08
AV422058                                                               55  3e-08
BP031533                                                               49  2e-06
BP053381                                                               47  8e-06
TC13544 similar to UP|Q9LU42 (Q9LU42) Emb|CAB45082.1, partial (11%)    41  5e-04
BP033992                                                               40  0.001
TC18159 homologue to UP|COLA_ARATH (O82256) Zinc finger protein ...    38  0.004
BP032958                                                               33  0.12
TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partia...    32  0.21
BP073830                                                               31  0.61
TC16879 similar to UP|Q9LRH6 (Q9LRH6) ZIM, partial (17%)               30  0.80
TC16030 similar to UP|Q9DWH4 (Q9DWH4) Pr4.1, partial (9%)              29  2.3
TC10506 similar to UP|Q9X5B4 (Q9X5B4) Lactoferrin-binding protei...    28  3.0
BP055416                                                               28  4.0
BP038960                                                               28  4.0

>TC12008 similar to GB|BAB13743.1|10281006|AB046955 pseudo-response
           regulator 5 {Arabidopsis thaliana;} , partial (7%)
          Length = 496

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
 Frame = +3

Query: 452 NICLQPGQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDR---CFDKKIRYV 508
           N+    G      S  + GS  +  V+ +KA +R+AAL KF+QKRK+R   CF KK+RY 
Sbjct: 3   NVGSHNGLTGNSXSGDASGSGSANRVDQNKASQRQAALTKFRQKRKEREERCFHKKVRYQ 182

Query: 509 NRKRLAERRPRVRGQFVRKLS 529
           +RKRLAE+RPR RGQFVR+ S
Sbjct: 183 SRKRLAEQRPRFRGQFVRQSS 245


>TC8495 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-response
           regulator 3), partial (9%)
          Length = 783

 Score = 71.2 bits (173), Expect = 4e-13
 Identities = 31/43 (72%), Positives = 40/43 (92%)
 Frame = +1

Query: 485 REAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
           REAAL KF+ KRK+RCF+KK+RY +RK+LAE+RPR+RGQFVR+
Sbjct: 76  REAALAKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRR 204


>AV415674 
          Length = 319

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 30/43 (69%), Positives = 39/43 (89%)
 Frame = +2

Query: 485 REAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
           REAAL KF+ KRK+RCF+ K+RY +RK+LAE+RPR+RGQFVR+
Sbjct: 131 REAALAKFRLKRKERCFENKVRYHSRKKLAEQRPRIRGQFVRR 259


>CB827384 
          Length = 548

 Score = 59.7 bits (143), Expect = 1e-09
 Identities = 34/129 (26%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
 Frame = +2

Query: 31  DRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQY---------- 80
           D  ++ +L  DD     + +  LL   S +VT V S  + +  L  +G+           
Sbjct: 113 DSDELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVK 292

Query: 81  IDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKP 140
           +++I+ +  +P   G +LLK +      R IPV++MS+++ +  + +CL  GA D+L+KP
Sbjct: 293 VNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDRCLEEGAEDFLLKP 472

Query: 141 LRTNELLNL 149
           ++ +++  L
Sbjct: 473 VKLSDVRRL 499


>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
           (57%)
          Length = 1185

 Score = 58.5 bits (140), Expect = 3e-09
 Identities = 46/144 (31%), Positives = 73/144 (49%)
 Frame = +1

Query: 392 YYYNSGVVNHVMLPSSAQLYQKNMQDIHSHANSSMIAQYNHLAQCSPHANGMTSFPYYPM 451
           ++Y++   N +  P+S           H HA SS   +   +    P  N M+   Y   
Sbjct: 631 HHYDNDANNQIDFPTSKPFAHNYNAKSHYHAVSSPSMEVGVV----PDGNAMSEISY--- 789

Query: 452 NICLQPGQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIRYVNRK 511
             C       TP   P++ +     V  S ADR EA ++++++KRK+R F+K IRY +RK
Sbjct: 790 --CCY----GTPA--PAVEA-----VQFSAADR-EARVLRYREKRKNRRFEKTIRYASRK 927

Query: 512 RLAERRPRVRGQFVRKLSGVDVYL 535
             AE RPR++G+F ++ S V+V L
Sbjct: 928 AYAETRPRIKGRFAKR-SDVNVNL 996


>TC14920 similar to UP|BAC92733 (BAC92733) Hd1-like protein, partial (15%)
          Length = 645

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 23/47 (48%), Positives = 37/47 (77%)
 Frame = +3

Query: 481 KADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
           +A  REA +M++++KRK+R F+K IRY +RK  AE RPR++G+F ++
Sbjct: 120 RAVDREAKVMRYREKRKNRRFEKTIRYASRKAYAESRPRIKGRFAKR 260


>AV422058 
          Length = 442

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 24/47 (51%), Positives = 38/47 (80%)
 Frame = -1

Query: 481 KADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
           K  +REA++ ++K+KR++R F KKIRY  RK  AE+RPR++G+FV++
Sbjct: 370 KVGQREASVQRYKEKRQNRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 230


>BP031533 
          Length = 529

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 21/45 (46%), Positives = 34/45 (74%)
 Frame = -1

Query: 482 ADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVR 526
           +  R++AL+++KQK+K R ++K IRY +RK  AE R R+RG+F +
Sbjct: 427 SQERDSALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 293


>BP053381 
          Length = 524

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 24/67 (35%), Positives = 38/67 (55%)
 Frame = -2

Query: 460 VSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPR 519
           V +PH  P   S+ + E  L K       L +++ K+  R F +KI+Y  RK LA+ +PR
Sbjct: 466 VRSPHERPFFSSNCTSEERLQK-------LSRYRNKKTKRNFGRKIKYACRKALADSQPR 308

Query: 520 VRGQFVR 526
           +RG+F +
Sbjct: 307 IRGRFAK 287


>TC13544 similar to UP|Q9LU42 (Q9LU42) Emb|CAB45082.1, partial (11%)
          Length = 579

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +1

Query: 460 VSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIR 506
           V  P    + G+ G+ +   S   RR A+L++F++KRK+RCFDKKIR
Sbjct: 445 VEVPLDQSNRGTDGNPK--RSNLSRRIASLVRFREKRKERCFDKKIR 579


>BP033992 
          Length = 506

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = -1

Query: 496 RKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDV----YLNGQPASADYDEEE--- 548
           R  R F+K I+Y  RK LA+ RPR+RG+F R     ++     +      AD+  EE   
Sbjct: 506 RNQRNFNKTIKYACRKTLADNRPRIRGRFARNDETCEITKAPCVTRDEDEADFWIEELRL 327

Query: 549 EEEEDNHV 556
            EE+D+ V
Sbjct: 326 HEEQDHDV 303


>TC18159 homologue to UP|COLA_ARATH (O82256) Zinc finger protein
           constans-like 10, partial (9%)
          Length = 468

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = +3

Query: 493 KQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVR 526
           +QK+K R ++K IRY +RK  AE R R+RG+F +
Sbjct: 138 QQKKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 239


>BP032958 
          Length = 526

 Score = 33.1 bits (74), Expect = 0.12
 Identities = 20/48 (41%), Positives = 28/48 (57%)
 Frame = -1

Query: 510 RKRLAERRPRVRGQFVRKLSGVDVYLNGQPASADYDEEEEEEEDNHVA 557
           RK LA+ RPRVRG+F R     D     Q +     EEE+EE+++ V+
Sbjct: 526 RKTLADSRPRVRGRFARN-DETDQKPTVQWSHIGAAEEEDEEDESWVS 386


>TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partial (6%)
          Length = 520

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 82  DIILAEVDLPIKKGMKLLKYLSRDKE--LRRIPVIMMSAKDEVPIVVKCLRLGAADYLVK 139
           D+IL +  +P   G +  K + + +E     IP++ ++A        +CL++G   YL K
Sbjct: 24  DLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVGMDAYLTK 203

Query: 140 PLRTNELLNLWTHMWRR 156
           P+   ++++    + +R
Sbjct: 204 PIDFKKMVSTIISLTKR 254


>BP073830 
          Length = 528

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 95  GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVK 139
           G  LLK +     LR IPV++ S ++ +  + KCL  G  ++ ++
Sbjct: 475 GYDLLKEIKESSSLRYIPVVIRSFENVLSRINKCLEEGVEEFFLE 341


>TC16879 similar to UP|Q9LRH6 (Q9LRH6) ZIM, partial (17%)
          Length = 622

 Score = 30.4 bits (67), Expect = 0.80
 Identities = 11/18 (61%), Positives = 17/18 (94%)
 Frame = +2

Query: 484 RREAALMKFKQKRKDRCF 501
           +R A+L++F+QKRK+RCF
Sbjct: 569 QRAASLIRFRQKRKERCF 622


>TC16030 similar to UP|Q9DWH4 (Q9DWH4) Pr4.1, partial (9%)
          Length = 631

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 7/49 (14%)
 Frame = -3

Query: 398 VVNHVMLPSSAQ----LYQKNMQDIHSHAN---SSMIAQYNHLAQCSPH 439
           +V+H+  PSS+     L+Q+ +QD+H H N     M A +  + Q  P+
Sbjct: 317 LVHHLHYPSSSLSHLFLHQQQLQDVHQHPNYLPIPMTAPWYQILQLHPY 171


>TC10506 similar to UP|Q9X5B4 (Q9X5B4) Lactoferrin-binding protein, partial
           (3%)
          Length = 521

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 534 YLNGQPASADYDEEEEEEEDN 554
           +L  QP S D +EEEE EE+N
Sbjct: 511 FLTNQPPSFDPEEEEEAEEEN 449


>BP055416 
          Length = 500

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 2/62 (3%)
 Frame = -2

Query: 82  DIILAEVDLPIKKGMKLLKYLSRDKELR--RIPVIMMSAKDEVPIVVKCLRLGAADYLVK 139
           D++L +  +P   G +  K + + +      IP++ ++A        KCL +G   YL K
Sbjct: 391 DLVLMDCQMPKMDGYEATKEIRKSEVGTGLHIPIVALTAHAMSCDEAKCLGVGMDAYLTK 212

Query: 140 PL 141
           P+
Sbjct: 211 PI 206


>BP038960 
          Length = 524

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +3

Query: 536 NGQPASADYD-----EEEEEEEDNHVAR 558
           + +  +ADYD     EEEEEEED H  R
Sbjct: 306 DSEEEAADYDDDEEEEEEEEEEDEHADR 389


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.129    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,686,587
Number of Sequences: 28460
Number of extensions: 117270
Number of successful extensions: 741
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of query: 565
length of database: 4,897,600
effective HSP length: 95
effective length of query: 470
effective length of database: 2,193,900
effective search space: 1031133000
effective search space used: 1031133000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)


Lotus: description of TM0093b.4