
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0093b.4
(565 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12008 similar to GB|BAB13743.1|10281006|AB046955 pseudo-respon... 77 1e-14
TC8495 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-resp... 71 4e-13
AV415674 69 2e-12
CB827384 60 1e-09
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p... 59 3e-09
TC14920 similar to UP|BAC92733 (BAC92733) Hd1-like protein, part... 55 3e-08
AV422058 55 3e-08
BP031533 49 2e-06
BP053381 47 8e-06
TC13544 similar to UP|Q9LU42 (Q9LU42) Emb|CAB45082.1, partial (11%) 41 5e-04
BP033992 40 0.001
TC18159 homologue to UP|COLA_ARATH (O82256) Zinc finger protein ... 38 0.004
BP032958 33 0.12
TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partia... 32 0.21
BP073830 31 0.61
TC16879 similar to UP|Q9LRH6 (Q9LRH6) ZIM, partial (17%) 30 0.80
TC16030 similar to UP|Q9DWH4 (Q9DWH4) Pr4.1, partial (9%) 29 2.3
TC10506 similar to UP|Q9X5B4 (Q9X5B4) Lactoferrin-binding protei... 28 3.0
BP055416 28 4.0
BP038960 28 4.0
>TC12008 similar to GB|BAB13743.1|10281006|AB046955 pseudo-response
regulator 5 {Arabidopsis thaliana;} , partial (7%)
Length = 496
Score = 76.6 bits (187), Expect = 1e-14
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Frame = +3
Query: 452 NICLQPGQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDR---CFDKKIRYV 508
N+ G S + GS + V+ +KA +R+AAL KF+QKRK+R CF KK+RY
Sbjct: 3 NVGSHNGLTGNSXSGDASGSGSANRVDQNKASQRQAALTKFRQKRKEREERCFHKKVRYQ 182
Query: 509 NRKRLAERRPRVRGQFVRKLS 529
+RKRLAE+RPR RGQFVR+ S
Sbjct: 183 SRKRLAEQRPRFRGQFVRQSS 245
>TC8495 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-response
regulator 3), partial (9%)
Length = 783
Score = 71.2 bits (173), Expect = 4e-13
Identities = 31/43 (72%), Positives = 40/43 (92%)
Frame = +1
Query: 485 REAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
REAAL KF+ KRK+RCF+KK+RY +RK+LAE+RPR+RGQFVR+
Sbjct: 76 REAALAKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRR 204
>AV415674
Length = 319
Score = 69.3 bits (168), Expect = 2e-12
Identities = 30/43 (69%), Positives = 39/43 (89%)
Frame = +2
Query: 485 REAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
REAAL KF+ KRK+RCF+ K+RY +RK+LAE+RPR+RGQFVR+
Sbjct: 131 REAALAKFRLKRKERCFENKVRYHSRKKLAEQRPRIRGQFVRR 259
>CB827384
Length = 548
Score = 59.7 bits (143), Expect = 1e-09
Identities = 34/129 (26%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Frame = +2
Query: 31 DRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQY---------- 80
D ++ +L DD + + LL S +VT V S + + L +G+
Sbjct: 113 DSDELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVK 292
Query: 81 IDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKP 140
+++I+ + +P G +LLK + R IPV++MS+++ + + +CL GA D+L+KP
Sbjct: 293 VNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDRCLEEGAEDFLLKP 472
Query: 141 LRTNELLNL 149
++ +++ L
Sbjct: 473 VKLSDVRRL 499
>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(57%)
Length = 1185
Score = 58.5 bits (140), Expect = 3e-09
Identities = 46/144 (31%), Positives = 73/144 (49%)
Frame = +1
Query: 392 YYYNSGVVNHVMLPSSAQLYQKNMQDIHSHANSSMIAQYNHLAQCSPHANGMTSFPYYPM 451
++Y++ N + P+S H HA SS + + P N M+ Y
Sbjct: 631 HHYDNDANNQIDFPTSKPFAHNYNAKSHYHAVSSPSMEVGVV----PDGNAMSEISY--- 789
Query: 452 NICLQPGQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIRYVNRK 511
C TP P++ + V S ADR EA ++++++KRK+R F+K IRY +RK
Sbjct: 790 --CCY----GTPA--PAVEA-----VQFSAADR-EARVLRYREKRKNRRFEKTIRYASRK 927
Query: 512 RLAERRPRVRGQFVRKLSGVDVYL 535
AE RPR++G+F ++ S V+V L
Sbjct: 928 AYAETRPRIKGRFAKR-SDVNVNL 996
>TC14920 similar to UP|BAC92733 (BAC92733) Hd1-like protein, partial (15%)
Length = 645
Score = 55.1 bits (131), Expect = 3e-08
Identities = 23/47 (48%), Positives = 37/47 (77%)
Frame = +3
Query: 481 KADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
+A REA +M++++KRK+R F+K IRY +RK AE RPR++G+F ++
Sbjct: 120 RAVDREAKVMRYREKRKNRRFEKTIRYASRKAYAESRPRIKGRFAKR 260
>AV422058
Length = 442
Score = 55.1 bits (131), Expect = 3e-08
Identities = 24/47 (51%), Positives = 38/47 (80%)
Frame = -1
Query: 481 KADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
K +REA++ ++K+KR++R F KKIRY RK AE+RPR++G+FV++
Sbjct: 370 KVGQREASVQRYKEKRQNRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 230
>BP031533
Length = 529
Score = 48.9 bits (115), Expect = 2e-06
Identities = 21/45 (46%), Positives = 34/45 (74%)
Frame = -1
Query: 482 ADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVR 526
+ R++AL+++KQK+K R ++K IRY +RK AE R R+RG+F +
Sbjct: 427 SQERDSALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 293
>BP053381
Length = 524
Score = 47.0 bits (110), Expect = 8e-06
Identities = 24/67 (35%), Positives = 38/67 (55%)
Frame = -2
Query: 460 VSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPR 519
V +PH P S+ + E L K L +++ K+ R F +KI+Y RK LA+ +PR
Sbjct: 466 VRSPHERPFFSSNCTSEERLQK-------LSRYRNKKTKRNFGRKIKYACRKALADSQPR 308
Query: 520 VRGQFVR 526
+RG+F +
Sbjct: 307 IRGRFAK 287
>TC13544 similar to UP|Q9LU42 (Q9LU42) Emb|CAB45082.1, partial (11%)
Length = 579
Score = 41.2 bits (95), Expect = 5e-04
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +1
Query: 460 VSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIR 506
V P + G+ G+ + S RR A+L++F++KRK+RCFDKKIR
Sbjct: 445 VEVPLDQSNRGTDGNPK--RSNLSRRIASLVRFREKRKERCFDKKIR 579
>BP033992
Length = 506
Score = 39.7 bits (91), Expect = 0.001
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = -1
Query: 496 RKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDV----YLNGQPASADYDEEE--- 548
R R F+K I+Y RK LA+ RPR+RG+F R ++ + AD+ EE
Sbjct: 506 RNQRNFNKTIKYACRKTLADNRPRIRGRFARNDETCEITKAPCVTRDEDEADFWIEELRL 327
Query: 549 EEEEDNHV 556
EE+D+ V
Sbjct: 326 HEEQDHDV 303
>TC18159 homologue to UP|COLA_ARATH (O82256) Zinc finger protein
constans-like 10, partial (9%)
Length = 468
Score = 38.1 bits (87), Expect = 0.004
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 493 KQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVR 526
+QK+K R ++K IRY +RK AE R R+RG+F +
Sbjct: 138 QQKKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 239
>BP032958
Length = 526
Score = 33.1 bits (74), Expect = 0.12
Identities = 20/48 (41%), Positives = 28/48 (57%)
Frame = -1
Query: 510 RKRLAERRPRVRGQFVRKLSGVDVYLNGQPASADYDEEEEEEEDNHVA 557
RK LA+ RPRVRG+F R D Q + EEE+EE+++ V+
Sbjct: 526 RKTLADSRPRVRGRFARN-DETDQKPTVQWSHIGAAEEEDEEDESWVS 386
>TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partial (6%)
Length = 520
Score = 32.3 bits (72), Expect = 0.21
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 82 DIILAEVDLPIKKGMKLLKYLSRDKE--LRRIPVIMMSAKDEVPIVVKCLRLGAADYLVK 139
D+IL + +P G + K + + +E IP++ ++A +CL++G YL K
Sbjct: 24 DLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVGMDAYLTK 203
Query: 140 PLRTNELLNLWTHMWRR 156
P+ ++++ + +R
Sbjct: 204 PIDFKKMVSTIISLTKR 254
>BP073830
Length = 528
Score = 30.8 bits (68), Expect = 0.61
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 95 GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVK 139
G LLK + LR IPV++ S ++ + + KCL G ++ ++
Sbjct: 475 GYDLLKEIKESSSLRYIPVVIRSFENVLSRINKCLEEGVEEFFLE 341
>TC16879 similar to UP|Q9LRH6 (Q9LRH6) ZIM, partial (17%)
Length = 622
Score = 30.4 bits (67), Expect = 0.80
Identities = 11/18 (61%), Positives = 17/18 (94%)
Frame = +2
Query: 484 RREAALMKFKQKRKDRCF 501
+R A+L++F+QKRK+RCF
Sbjct: 569 QRAASLIRFRQKRKERCF 622
>TC16030 similar to UP|Q9DWH4 (Q9DWH4) Pr4.1, partial (9%)
Length = 631
Score = 28.9 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 7/49 (14%)
Frame = -3
Query: 398 VVNHVMLPSSAQ----LYQKNMQDIHSHAN---SSMIAQYNHLAQCSPH 439
+V+H+ PSS+ L+Q+ +QD+H H N M A + + Q P+
Sbjct: 317 LVHHLHYPSSSLSHLFLHQQQLQDVHQHPNYLPIPMTAPWYQILQLHPY 171
>TC10506 similar to UP|Q9X5B4 (Q9X5B4) Lactoferrin-binding protein, partial
(3%)
Length = 521
Score = 28.5 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 534 YLNGQPASADYDEEEEEEEDN 554
+L QP S D +EEEE EE+N
Sbjct: 511 FLTNQPPSFDPEEEEEAEEEN 449
>BP055416
Length = 500
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 2/62 (3%)
Frame = -2
Query: 82 DIILAEVDLPIKKGMKLLKYLSRDKELR--RIPVIMMSAKDEVPIVVKCLRLGAADYLVK 139
D++L + +P G + K + + + IP++ ++A KCL +G YL K
Sbjct: 391 DLVLMDCQMPKMDGYEATKEIRKSEVGTGLHIPIVALTAHAMSCDEAKCLGVGMDAYLTK 212
Query: 140 PL 141
P+
Sbjct: 211 PI 206
>BP038960
Length = 524
Score = 28.1 bits (61), Expect = 4.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
Frame = +3
Query: 536 NGQPASADYD-----EEEEEEEDNHVAR 558
+ + +ADYD EEEEEEED H R
Sbjct: 306 DSEEEAADYDDDEEEEEEEEEEDEHADR 389
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,686,587
Number of Sequences: 28460
Number of extensions: 117270
Number of successful extensions: 741
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of query: 565
length of database: 4,897,600
effective HSP length: 95
effective length of query: 470
effective length of database: 2,193,900
effective search space: 1031133000
effective search space used: 1031133000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0093b.4