TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0093a.1
         (268 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7925 homologue to UP|RPE_SPIOL (Q43157) Ribulose-phosphate 3-e...   526  e-150
TC13780 similar to UP|Q9SE42 (Q9SE42) D-ribulose-5-phosphate 3-e...    91  2e-19
TC15403 similar to UP|Q9SE42 (Q9SE42) D-ribulose-5-phosphate 3-e...    69  6e-13
CN825531                                                               33  0.066
AW428768                                                               30  0.33
TC15354 similar to PIR|B86314|B86314 F2H15.12 protein - Arabidop...    29  0.73
TC8478 similar to PIR|B86367|B86367 protein F26F24.16 [imported]...    28  1.2
BP048030                                                               28  2.1

>TC7925 homologue to UP|RPE_SPIOL (Q43157) Ribulose-phosphate 3-epimerase,
           chloroplast precursor  (Pentose-5-phosphate 3-epimerase)
           (PPE) (RPE) (R5P3E) , partial (94%)
          Length = 1387

 Score =  526 bits (1354), Expect = e-150
 Identities = 268/268 (100%), Positives = 268/268 (100%)
 Frame = +3

Query: 1   INGPSSLHSKTAIFNNHPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKL 60
           INGPSSLHSKTAIFNNHPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKL
Sbjct: 189 INGPSSLHSKTAIFNNHPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKL 368

Query: 61  GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVP 120
           GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVP
Sbjct: 369 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVP 548

Query: 121 DFIKAGADIVSIHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVL 180
           DFIKAGADIVSIHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVL
Sbjct: 549 DFIKAGADIVSIHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVL 728

Query: 181 IMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALV 240
           IMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALV
Sbjct: 729 IMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALV 908

Query: 241 AGSAVFGAKDYAEAIKGIKTSKRPEPVA 268
           AGSAVFGAKDYAEAIKGIKTSKRPEPVA
Sbjct: 909 AGSAVFGAKDYAEAIKGIKTSKRPEPVA 992


>TC13780 similar to UP|Q9SE42 (Q9SE42) D-ribulose-5-phosphate 3-epimerase  ,
           partial (50%)
          Length = 445

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 46/113 (40%), Positives = 68/113 (59%)
 Frame = +1

Query: 48  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLD 107
           ++PS+LS++FA L  + + +   G DW+H+D+MDG FVPN+TIG  ++++LR  T   LD
Sbjct: 106 IAPSMLSSDFANLASEAQRMLDYGADWLHMDIMDGHFVPNLTIGTPVIESLRKHTKAYLD 285

Query: 108 VHLMIVEPEQRVPDFIKAGADIVSIHCEQSSTIHLHRTVNQVKSLGAKAGVVL 160
            HLM+  P   V    KAGA   + H E S   +    + ++KS G K GV L
Sbjct: 286 CHLMVTNPLDYVEPLGKAGASGFTFHVEASKD-NWKEVIQRIKSQGMKPGVAL 441


>TC15403 similar to UP|Q9SE42 (Q9SE42) D-ribulose-5-phosphate 3-epimerase  ,
           partial (40%)
          Length = 562

 Score = 69.3 bits (168), Expect = 6e-13
 Identities = 38/86 (44%), Positives = 55/86 (63%)
 Frame = +2

Query: 176 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAG 235
           V++VL+M+V PGFGGQ F+   + K+  LR+    K  +  IEVDGG+ P+       AG
Sbjct: 23  VEMVLVMTVAPGFGGQKFMPEMMDKVRILRK----KYPSLDIEVDGGLGPSTIDMAASAG 190

Query: 236 ANALVAGSAVFGAKDYAEAIKGIKTS 261
           AN +VAGS+VFGA + A+ I  ++ S
Sbjct: 191 ANCIVAGSSVFGAPEPAQVISLLRNS 268


>CN825531 
          Length = 627

 Score = 32.7 bits (73), Expect = 0.066
 Identities = 24/82 (29%), Positives = 37/82 (44%)
 Frame = -2

Query: 136 QSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIE 195
           ++ST  L  TV+Q+      A  + +PG PL  I  +  + D   I  ++ GFG      
Sbjct: 200 KASTKSLQETVSQLG*ALCAASSLYDPGIPL*DIRTLAPLSDAATISDMDSGFG------ 39

Query: 196 SQVKKISDLRRLCAEKGVNPWI 217
                 S+L+ LC     NPW+
Sbjct: 38  ------SELKSLC-----NPWV 6


>AW428768 
          Length = 286

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 193 FIESQVKKISDLRRLCAEKGVNP 215
           +IESQ+ KI  LR+LCAEK   P
Sbjct: 123 YIESQLNKIYLLRKLCAEKATVP 191


>TC15354 similar to PIR|B86314|B86314 F2H15.12 protein - Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (43%)
          Length = 668

 Score = 29.3 bits (64), Expect = 0.73
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 131 SIHCEQSSTIH-LHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIM 182
           + H E S  +  L R  ++ K  GAK  VV   G+PL    +V D+ D V+ M
Sbjct: 18  NFHPENSHVLPALMRRFHEAKVKGAKEVVVWGTGSPLREFLHVDDLADAVVFM 176


>TC8478 similar to PIR|B86367|B86367 protein F26F24.16 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (67%)
          Length = 1124

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +3

Query: 126 GADIVSIHCEQSS-----TIHLHRTVNQV--KSLGAKAGVVLNPGTP 165
           G  +V  + E+++     T  L R+V Q   K +  KA V+LNPG P
Sbjct: 672 GGTLVGYYLEETANWGLDTKELRRSVEQARYKGINVKAMVILNPGNP 812


>BP048030 
          Length = 323

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 144 RTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIM 182
           R  ++ K  GAK  VV   G+PL    +V D+ D V+ M
Sbjct: 318 RRFHEAKVKGAKEVVVWGTGSPLREFLHVDDLADAVVFM 202


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,822,251
Number of Sequences: 28460
Number of extensions: 42632
Number of successful extensions: 217
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of query: 268
length of database: 4,897,600
effective HSP length: 89
effective length of query: 179
effective length of database: 2,364,660
effective search space: 423274140
effective search space used: 423274140
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)